Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceratocystis_20albifundus_20[genbank_20GCA_5F000813685.1_202015-01- 02] 1,405 sequences; 26,875,327 total letters Query= NC_007346.1 Length=407339 Score E Sequences producing significant alignments: (Bits) Value seq539 387 4e-102 >seq539 Length=40911 Score = 387 bits (428), Expect = 4e-102 Identities = 1143/1743 (66%), Gaps = 28/1743 (2%) Strand=Plus/Minus Query 363431 TCAATGGTGATATTGTTGAACGCCCGCAGCATATGTTAATGCGTGTTGCTATTGGTATCC 363490 || ||||| | ||||||||||| || ||||| ||| |||||||||||||| | ||||| Sbjct 17943 TCGATGGTAAGATTGTTGAACGTCCCCAGCACATGATAATGCGTGTTGCTGTGGGTAT-- 17886 Query 363491 ATTGCCCGGAT---GTTGATGCCGCGATTGAAACATATAAGCTTCTAAGT---GCTCGTG 363544 ||| || || || | | ||||||| || || ||| || || || || Sbjct 17885 -TTGGGGTGACAAAGTCGAACGTGTGCTTGAAACCTACAA-CTT-TATGTCCAGCAAGT- 17830 Query 363545 TATTCACGCACGCCACGCCAACAATGTACAATGCTGGAACTCGTAATCCACAGATGTCTT 363604 | ||||| ||||| | || || | | |||||||| || | | | ||| |||||| Sbjct 17829 TCTTCACTCACGCATCACCTACGCTCTTTAATGCTGGTACCCCCCAGGCTCAGTTGTCTT 17770 Query 363605 CTTGCTTTCTTCTAAAAATGAAGGACGATTCCATCGAGGGTATCTTTGACACACTTAAGA 363664 | ||||| || | | ||||| || || ||||||||| || | || || || |||| Sbjct 17769 CGTGCTTCCTAGTCGACATGAAAGATGACAGCATCGAGGGCATTTACGATACCCTCAAGA 17710 Query 363665 ATTGTGCTCTTATTTCCAAGAATGCAGGCGGAATTGGTGTATCGATCCACAATGTTCGTG 363724 |||||| | |||||||||| || ||||| || ||| | ||||| | |||||| Sbjct 17709 CTTGTGCCATGATTTCCAAGATGGCTGGCGGTATCGGTCTCAATGTCCACCGTATTCGTG 17650 Query 363725 C-ACAGAACAGTTACATTCGCGGCACAGGGGGATACT-CGAATGGGCTGGTTCCCATGCT 363782 | || | | ||||||| || || || |||| |||| || | ||||||||||| Sbjct 17649 CCACTGG-CTCTTACATTGCTGGTACTAACGG-TACTTCGAACGGTATCGTTCCCATGCT 17592 Query 363783 TCGTGTGTTTGACAATACTGCGAGGTACGTCGACCAGGGTGGAGGAAAGCGCAAAGGGGC 363842 ||||| || |||| ||||| | || || |||||||||||| ||||| || || Sbjct 17591 ACGTGTTTTCAACAACACTGCCCGTTATGTTGACCAGGGTGGAAACAAGCGACCTGGAGC 17532 Query 363843 GTTTGCTATGTATCTCGAGCCTCATCATGCCGATATTTTTGAGTTTCTTGAGCTCCGGAA 363902 ||||| || || |||||||| ||||| ||| | || ||||| || || | || || Sbjct 17531 CTTTGCCATTTACCTCGAGCCATGGCATGCTGATGTCTTCGAGTTCCTCGACTTGCGCAA 17472 Query 363903 AAACACGGGAAAAGAGGAATTGCGTGCACGTGATCTGTTCTATGCACTTTGGGTTTCTGA 363962 ||| ||||| || ||| | ||||| ||||| || |||| || || ||| | | || Sbjct 17471 GAACCACGGAAAGGAAGAAGTCCGTGCTCGTGACCTATTCTTGGCCCTGTGGATCTGCGA 17412 Query 363963 CCATTTTATGAAGCGCGTGGAGGCAGGTAAGAATTGGTCACTCTTTTGCCCACACGAATG 364022 | || |||||||| || ||| | | || | ||| | ||| | ||||| | ||||| Sbjct 17411 CTTGTTCATGAAGCGTGTTGAGAAAAATGAGGACTGGACTCTCATGTGCCCCAATGAATG 17352 Query 364023 TCCAGGTCTTTCCGATGTATGGGGTGACGACTATGTTGCTCTATACGAAAAGTATGAATC 364082 || || | | ||| | || || || | || ||||| || |||||||| || Sbjct 17351 CCCCGGCTTGGCGGATTGCTATGGCGAAGAGTTTGAGGCTCTGTATGAAAAGTACGAGAA 17292 Query 364083 GGAGGGAAAGGCTCGTAAGACAATTCCCGCACAGAAGCTATGGTTTGCCATCATGGATTC 364142 |||||| | ||| | | | || |||||||| |||| |||||| |||| | Sbjct 17291 GGAGGGTCGCGGTCGCACGGTTGTCAAGGCCCAGAAGCTGTGGTATGCCATTCTGGAGGC 17232 Query 364143 GCAGATTGAGACAGGAACACCCTAT-ATGTTGTACAAAGATTCGTGCAACCGCAAGTCCA 364201 |||| |||||| || | ||||| | ||| | |||||||| |||||||||||| || Sbjct 17231 CCAGACTGAGACTGGCA-ACCCTTTCATGCTTTACAAAGACCATTGCAACCGCAAGAGCA 17173 Query 364202 ACCAGCAGCACCTTGGTACAATTCAGCAGAGC-AACCTATGTACCGAGATTATTGAATAC 364260 | ||| | | || ||||| | || |||| | ||||| || || |||||||| || || Sbjct 17172 ATCAGAAAAATCTAGGTACCA-TCCGCAGCTCAAACCTGTGCACTGAGATTATCGAGTAT 17114 Query 364261 ACCGCTCCCGACGAGACTGCCGTATGTAACCTTGCGTCGATCGCGCTTCCGGCGTTTGT- 364319 || || |||||| ||| || || ||||| || || | || ||||| | || || Sbjct 17113 TGTGCCCCTGACGAGGTTGCTGTGTGCAACCTAGCATCTCTGGCCCTTCCTTCCTTCGTG 17054 Query 364320 -----AAAAGATGGTACTTTTGACCACCAGCATCTTTATGACGTAACCTATCATGCTACT 364374 || | ||| | |||| | | || | || || || | || | | Sbjct 17053 GACTACAACAAGGGTGAGTATGACTTTAAAAAGCTACACGAAGTCACTCAAGTTGTTGTT 16994 Query 364375 TGCAATCTCGACAAGGTTATCGACAAGAATTATTATCCAATTCCTGAAGCCGAGCGTTCT 364434 |||| || || | || || |||| | || || | | ||||| | Sbjct 16993 CGCAACCTAAACCGCATCATTGATGTGAATCACTACCCTGTCCAGGAAGCTCACAACAGC 16934 Query 364435 AATATGCGTCATCGCCCGATTGGTCTTGGTGTACAGGGCCTCGCTGACGTTTTTATGATG 364494 || ||||| || || || |||||| |||||||||||||| | ||||| | ||| | Sbjct 16933 AACATGCGCCACCGTCCCATTGGTGTTGGTGTACAGGGCTTGGCTGATGCTTTCCTTGCT 16874 Query 364495 CTCAAGATGGCATTTGATTCGCCTGACGCTCGTGTTCTAAATAAGGAGATCTTTGAAACA 364554 ||| ||| | || || || || || || || || || || |||| |||||||| Sbjct 16873 CTCCGCATGCCTTTCGAATCCCCCGAAGCACGCCAGCTTAACAAACAGATTTTTGAAACC 16814 Query 364555 ATGTATTTTGCCGCAATGACTGCTTCGTGTGATTTGGCAAAAACCAAGGGAAAGTACTCT 364614 || || |||||| | |||||||| || | || | || |||| | ||||| Sbjct 16813 ATCTACCACGCCGCACTAACTGCTTCAATGGAAATCGCCCAGACGGAGGGTACTTACTCA 16754 Query 364615 ACTTATGAGGGGTCCCCTCTTTCGCAGGGAAAATTCCAGTTTGATCTATGGAATGTCACG 364674 || |||||||| |||||| | || || || | || ||||||||| | ||| |||| || Sbjct 16753 ACCTATGAGGGTTCCCCTGTCTCCCAAGGTATCTTGCAGTTTGATATGTGGGATGTGACT 16694 Query 364675 CCATCTGTCCGATGGAACTGGGATACGCTACGTTCCAACGTTAAGAAGCATGGTACTCGC 364734 || || || ||| ||||| | | || || |||| |||||||| ||| Sbjct 16693 CCTAGTGACCTGTGGGACTGGACTTCTCTGAAGGAGAAGATTAAACAGCATGGTGTACGC 16634 Query 364735 AACTCCCTCGTTACAGCGCCCATGCCCACGGCTTCTACTGCACAGATCCTCGGAAACAAC 364794 || || || | || |||||||| || || || | ||||| || || ||||| Sbjct 16633 AATTCTCTTCTGGTTGCACCCATGCCTACAGCCAGCACATCGCAGATTCTGGGCAACAAT 16574 Query 364795 GAGTGCTTCGAACCGTTTACAAGCAATCTTTATTCACGCCGGGTTCTTTCCGGAGAATTT 364854 |||||||||||||| | ||| ||| | || ||||| |||||| | || || || Sbjct 16573 GAGTGCTTCGAACCCTACACATCCAACATCTACCAGCGCCGCGTTCTTGCTGGCGAGTTC 16514 Query 364855 CCGGTAGTTAATAAGTACCTAGTCAAGGATCTTTCCGACCGCGGGCTGTGGGGTGACAGC 364914 | ||| || || | || | || ||| ||| | || | ||| ||||| Sbjct 16513 CAGGTGGTCAACCCCTGGCTCCTACGTGACCTTGTCGATCTTGGTTTATGGTCTGACAAT 16454 Query 364915 ATGAAGAACTATATCATCGCCGCTAATGGTTCTGTGCAGAACATTCCAGGATTTCCAGAA 364974 ||||||||| || || || | ||||| ||| | |||||||| || | |||| | Sbjct 16453 ATGAAGAACCGCATTATTGCGGACAATGGATCTATTCAGAACATCCCTAGCATTCCTGCT 16394 Query 364975 GATCTGAAGCCTATTTACAAAACCGTATGGGAAATTTCCATGCGAACTCTCATTGATATG 365034 ||| | || || | ||||| ||||| |||||||||||| ||| || | | | ||| Sbjct 16393 GATATTAAAGCTCTGTACAAGACCGTTTGGGAAATTTCCCAGCGTACAGTTGTGCAAATG 16334 Query 365035 GCGGCCGATCGCGGTGCTTTTATCTGTCAGAGC-CAGTCGTTTAACGTATTCATGACTCA 365093 || || || || |||||||| || || | | | ||||| | ||| | ||||| | Sbjct 16333 GCTGCTGACCGTGGTGCTTTCAT-TGACCAATCGCAGTCTCTAAACATTCACATGAAAGA 16275 Query 365094 GCCAACCTCCGCCAAGCTTACATCCATGCATTTCTACGGGTGGAAATCCGGTCTTAAGAC 365153 || ||| | |||| | || |||||| || ||| |||||| ||||| ||||| Sbjct 16274 TCCCACCATGGGCAAGATCACCAGCATGCACTTTGCCGGCTGGAAACTAGGTCTCAAGAC 16215 Query 365154 AGG 365156 || Sbjct 16214 GGG 16212 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1303330137598710