Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ceratocystis_20albifundus_20[genbank_20GCA_5F000813685.1_202015-01-
02] 1,405 sequences; 26,875,327 total letters
Query= NC_008291.1
Length=198050
Score E
Sequences producing significant alignments: (Bits) Value
seq539 147 3e-30
seq431 125 9e-24
>seq539
Length=40911
Score = 147 bits (162), Expect = 3e-30
Identities = 503/773 (65%), Gaps = 22/773 (3%)
Strand=Plus/Plus
Query 63158 TCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGC 63217
||||||||| | | | ||||| |||||| || || | ||| ||||| | |||||||
Sbjct 17481 TCGAGGAACTCGAAGACATCAGCATGCCATGGCTCGAGGTAAATGGCAAAGGCTCCAGGT 17540
Query 63218 CGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGA 63277
|| |||||||| ||||| || | || | || ||||| || |||| | | ||| |||
Sbjct 17541 CGCTTGTTTCCACCCTGGTCAACATAACGGGCAGTGTTGTTGAAAACACGTAGCATGGGA 17600
Query 63278 ATAATACCATTGGATGTACCATTGGTCCCTGAGATATAGCTTCCACTGGCACGAATA--T 63335
| ||||| || || ||||| || || || | || || ||| |||||||||||
Sbjct 17601 ACGATACCGTTCGAAGTACCGTTAGTACCAGCAATGTAAGAGCCAGTGGCACGAATACGG 17660
Query 63336 TACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACG 63395
| |||| ||||| || || || ||||| || || || | || || || | |
Sbjct 17661 TGGACATTG--AGACCGATACCGCCAGCCATCTTGGAAATCATGGCACAAGTCTTGAGGG 17718
Query 63396 TATCATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTAGACATTT 63455
|||| || |||||||| || || ||||| |||||| | ||| || || ||||| |
Sbjct 17719 TATCGTAAATGCCCTCGATGCTGTCATCTTTCATGTCGACTAGGAAGCACGAAGACAACT 17778
Query 63456 GGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGAGTAAACCATTTTTCAG 63515
| | || || |||||||| | ||||| || |||||||| || | || |
Sbjct 17779 GAGCCTGGGGGGTACCAGCATTAAAGAGCGTAGGTGATGCGTGAGTGAAGAACTTGCTGG 17838
Query 63516 AAAGTAGATTGTACGTCTCA---ATAGCTGAGTCTAT---ATCCCATTGATGAATTCCTA 63569
| | | ||||| || ||| | | | | || | | |||| ||| || |
Sbjct 17839 ACATAAAGTTGTAGGTTTCAAGCACACGTTCGACTTTGTCACCCCA------AATACCCA 17892
Query 63570 CTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAACA 63629
| || |||||||||| ||||||||| || | |||||| ||||| | | ||||| |
Sbjct 17893 CAGCAACACGCATTATCATGTGCTGGGGACGTTCAACAATCTTACCATCGAGTTTCAGTA 17952
Query 63630 AGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAA 63689
||| || || | ||| ||||| ||||| || | ||| ||||| || ||||| |
Sbjct 17953 GGTAAGAACGCTCAAGAGTCTTAAAGCCAAAGTACTGGTAGTTGAAGTCACGATCGTACA 18012
Query 63690 TAATAACCGAGTTGAGTTTATCCTTATATTTGTTAACTACATCCAT-GGTAATACTTGAA 63748
|| | |||| || | |||||| | ||| | || ||| || | ||
Sbjct 18013 CGATGGCAGAGTCCAGCTCATCCTTGTGACGCATAA-TGCACTCATATGTCTCTTTGGAG 18071
Query 63749 ATAATAGGAAAATGTTTCCCATTTTTAGGATTGACATAGTTGAATAAATCCTCCATCACT 63808
|| |||||| | ||| | || || || ||||| | | | | || | || |||
Sbjct 18072 ATCATAGGAGAGGCTTTACGGTTCGCGGGGTTAACATAATGGTAAAGGTCATACACCAC- 18130
Query 63809 TCACTA-AATAGtttttttGTTTCTTTGTGTAGATTTGATACGGCTATTCTAGCGGCTAG 63867
|| | || | || || |||| ||||| ||||| || || || || | ||||| ||
Sbjct 18131 CGACGACCATTGCTTCTTGGTTTGCTTGTGGAGATTAGAGACAGCAATACGGGCGGCCAG 18190
Query 63868 AATGGCATAATCCGGATGTTGTGTAGTACAAGT-GGCTGCTATTTCGGCTGCC 63919
||||||||||| ||||| |||| | || || ||| || ||||||| |||
Sbjct 18191 GATGGCATAATCGGGATG-TGTGACGGTCATGTAGGCGGCAGTTTCGGCGGCC 18242
Score = 98.7 bits (108), Expect = 1e-15
Identities = 205/305 (67%), Gaps = 3/305 (1%)
Strand=Plus/Plus
Query 61850 GTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATTCCCGTTTTTAGA 61909
|||||||| || || || | || | | |||||| || |||||||| ||||| || |||
Sbjct 16164 GTGAATTGGATAGGTGCAGCAGCAGCCTGCGTACGCAGGTAGTACATGCCCGTCTTGAGA 16223
Query 61910 CCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTATA 61969
|| || |||| ||| ||| ||||| || || | ||| | |||||| ||
Sbjct 16224 CCTAGTTTCCAGCCGGCAAAGTGCATGCTGGTGATCTTGCCCATGGTGGGATCTTTCATG 16283
Query 61970 TGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATA 62029
|| || || | ||| || ||| || ||||| || || | ||| |||||||||| | |
Sbjct 16284 TGAATGTTTAGAGACTGCGATTGGTCAATGAAAGCACCACGGTCAGCAGCCATTTGCACA 16343
Query 62030 ATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAATATCTTCTGGAAGG 62089
| || || | ||||||||||| || || || | |||||||| | |||| |
Sbjct 16344 ACTGTACGCTGGGAAATTTCCCAAACGGTCTTGTACAGAGCTTTAATATCAGCAGGAATG 16403
Query 62090 TTTG---TATTCTGAATGGATCCACCATCTGCCATAATCCTATTCTTGATCTCATCATTC 62146
| | | |||||||| |||||| || || ||||| | ||||| || | ||| |
Sbjct 16404 CTAGGGATGTTCTGAATAGATCCATTGTCCGCAATAATGCGGTTCTTCATATTGTCAGAC 16463
Query 62147 CATAA 62151
|||||
Sbjct 16464 CATAA 16468
>seq431
Length=155802
Score = 125 bits (138), Expect = 9e-24
Identities = 374/571 (65%), Gaps = 16/571 (3%)
Strand=Plus/Minus
Query 32652 AACATCAAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAA 32711
|||| || || || || ||| ||| || |||||||| | | ||| | ||||| ||
Sbjct 44199 AACAGCAGGCAAGCAAAGTCGGTGTGCAGGCCCTCGTCACGAGAAATGAGCTCGTTTGAG 44140
Query 32712 AACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCA 32771
|| || || || ||||| || |||||||| ||||| || ||||| || || | ||
Sbjct 44139 AAGGTCAGACCAGGCATGAGACCACGCTTGCGCAGCCAGAAGATGGAGGCGAAGGCACCC 44080
Query 32772 GAAAAGAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACC--GGCGC 32829
|| || || || || || || || |||||||||| || | || || ||| | | |
Sbjct 44079 GAGAAAAAGATGCCCTCGACAGCAGCAAAGGCAACTAGGCGCTGGGCA-AACGTAGACTC 44021
Query 32830 --TGTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTC 32887
|||| |||||||| ||||||| |||||||| | || || || || ||
Sbjct 44020 CTTGTCGGTGATCCACTTCAGAGCCCAGTCGGCCTTGCGACGGATGCAGGGAATAGTGTC 43961
Query 32888 TATAGCATTAAAGAGATAGtttttttCATTACTA----TCTTTAACATATGTATCAATCA 32943
|| ||||| || || || | | | | | | || || | || || ||||| |
Sbjct 43960 AATGGCATTGAATAGGTA----TGTGCGCTGCGAGGGCTCCTTGATGTAGGTGTCAATTA 43905
Query 32944 AAAGACTATACATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAGCATC 33003
|| ||| |||| ||||| |||||||| || || || || ||||||||||| |
Sbjct 43904 GCAGCGAATAGGTTTCAGAATGGATGTTTTCCATCATGATCTGGAAACCGTAGAAGCACC 43845
Query 33004 TAGCCTCGGTAATCTGTACTTCTGTACAAAATCGTTCTGCTAAATTTTCATTCACTATTC 33063
||||||| |||||| || || | || || || | | ||||| || || || |
Sbjct 43844 GGGCCTCGGGAATCTGCACCTCGCCTGAGAAGCGCTCAACGAGGTTTTCGTTGACGATGC 43785
Query 33064 CGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTC--TGGTGT 33121
| ||| ||| ||||| || || | | || || || || | ||||| || |
Sbjct 43784 CATCAGAGGCAGCAAAGAAGGCGAGAATGTGGGAGATGAAGTACTGCTCGTCCTTGTTCA 43725
Query 33122 TA-GTTTATTCCAATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATG 33180
| | || ||||| || | || ||| || || | ||| | ||||| | ||||| || |
Sbjct 43724 GACGGTTGTTCCAGTCGTGGAGATCCTTGGAGAGATCAATCTCTTCAGCAGTCCAGAAGG 43665
Query 33181 ATGCCTCTGCCTTTTTATACATATTCCAGAT 33211
| ||||| ||||| || ||||| | ||||||
Sbjct 43664 AAGCCTCGGCCTTCTTGTACATCTGCCAGAT 43634
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 633620871838000
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |