Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceratocystis_20albifundus_20[genbank_20GCA_5F000813685.1_202015-01- 02] 1,405 sequences; 26,875,327 total letters Query= NC_008291.1 Length=198050 Score E Sequences producing significant alignments: (Bits) Value seq539 147 3e-30 seq431 125 9e-24 >seq539 Length=40911 Score = 147 bits (162), Expect = 3e-30 Identities = 503/773 (65%), Gaps = 22/773 (3%) Strand=Plus/Plus Query 63158 TCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGC 63217 ||||||||| | | | ||||| |||||| || || | ||| ||||| | ||||||| Sbjct 17481 TCGAGGAACTCGAAGACATCAGCATGCCATGGCTCGAGGTAAATGGCAAAGGCTCCAGGT 17540 Query 63218 CGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGA 63277 || |||||||| ||||| || | || | || ||||| || |||| | | ||| ||| Sbjct 17541 CGCTTGTTTCCACCCTGGTCAACATAACGGGCAGTGTTGTTGAAAACACGTAGCATGGGA 17600 Query 63278 ATAATACCATTGGATGTACCATTGGTCCCTGAGATATAGCTTCCACTGGCACGAATA--T 63335 | ||||| || || ||||| || || || | || || ||| ||||||||||| Sbjct 17601 ACGATACCGTTCGAAGTACCGTTAGTACCAGCAATGTAAGAGCCAGTGGCACGAATACGG 17660 Query 63336 TACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACG 63395 | |||| ||||| || || || ||||| || || || | || || || | | Sbjct 17661 TGGACATTG--AGACCGATACCGCCAGCCATCTTGGAAATCATGGCACAAGTCTTGAGGG 17718 Query 63396 TATCATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTAGACATTT 63455 |||| || |||||||| || || ||||| |||||| | ||| || || ||||| | Sbjct 17719 TATCGTAAATGCCCTCGATGCTGTCATCTTTCATGTCGACTAGGAAGCACGAAGACAACT 17778 Query 63456 GGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGAGTAAACCATTTTTCAG 63515 | | || || |||||||| | ||||| || |||||||| || | || | Sbjct 17779 GAGCCTGGGGGGTACCAGCATTAAAGAGCGTAGGTGATGCGTGAGTGAAGAACTTGCTGG 17838 Query 63516 AAAGTAGATTGTACGTCTCA---ATAGCTGAGTCTAT---ATCCCATTGATGAATTCCTA 63569 | | | ||||| || ||| | | | | || | | |||| ||| || | Sbjct 17839 ACATAAAGTTGTAGGTTTCAAGCACACGTTCGACTTTGTCACCCCA------AATACCCA 17892 Query 63570 CTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAACA 63629 | || |||||||||| ||||||||| || | |||||| ||||| | | ||||| | Sbjct 17893 CAGCAACACGCATTATCATGTGCTGGGGACGTTCAACAATCTTACCATCGAGTTTCAGTA 17952 Query 63630 AGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAA 63689 ||| || || | ||| ||||| ||||| || | ||| ||||| || ||||| | Sbjct 17953 GGTAAGAACGCTCAAGAGTCTTAAAGCCAAAGTACTGGTAGTTGAAGTCACGATCGTACA 18012 Query 63690 TAATAACCGAGTTGAGTTTATCCTTATATTTGTTAACTACATCCAT-GGTAATACTTGAA 63748 || | |||| || | |||||| | ||| | || ||| || | || Sbjct 18013 CGATGGCAGAGTCCAGCTCATCCTTGTGACGCATAA-TGCACTCATATGTCTCTTTGGAG 18071 Query 63749 ATAATAGGAAAATGTTTCCCATTTTTAGGATTGACATAGTTGAATAAATCCTCCATCACT 63808 || |||||| | ||| | || || || ||||| | | | | || | || ||| Sbjct 18072 ATCATAGGAGAGGCTTTACGGTTCGCGGGGTTAACATAATGGTAAAGGTCATACACCAC- 18130 Query 63809 TCACTA-AATAGtttttttGTTTCTTTGTGTAGATTTGATACGGCTATTCTAGCGGCTAG 63867 || | || | || || |||| ||||| ||||| || || || || | ||||| || Sbjct 18131 CGACGACCATTGCTTCTTGGTTTGCTTGTGGAGATTAGAGACAGCAATACGGGCGGCCAG 18190 Query 63868 AATGGCATAATCCGGATGTTGTGTAGTACAAGT-GGCTGCTATTTCGGCTGCC 63919 ||||||||||| ||||| |||| | || || ||| || ||||||| ||| Sbjct 18191 GATGGCATAATCGGGATG-TGTGACGGTCATGTAGGCGGCAGTTTCGGCGGCC 18242 Score = 98.7 bits (108), Expect = 1e-15 Identities = 205/305 (67%), Gaps = 3/305 (1%) Strand=Plus/Plus Query 61850 GTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATTCCCGTTTTTAGA 61909 |||||||| || || || | || | | |||||| || |||||||| ||||| || ||| Sbjct 16164 GTGAATTGGATAGGTGCAGCAGCAGCCTGCGTACGCAGGTAGTACATGCCCGTCTTGAGA 16223 Query 61910 CCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTATA 61969 || || |||| ||| ||| ||||| || || | ||| | |||||| || Sbjct 16224 CCTAGTTTCCAGCCGGCAAAGTGCATGCTGGTGATCTTGCCCATGGTGGGATCTTTCATG 16283 Query 61970 TGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATA 62029 || || || | ||| || ||| || ||||| || || | ||| |||||||||| | | Sbjct 16284 TGAATGTTTAGAGACTGCGATTGGTCAATGAAAGCACCACGGTCAGCAGCCATTTGCACA 16343 Query 62030 ATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAATATCTTCTGGAAGG 62089 | || || | ||||||||||| || || || | |||||||| | |||| | Sbjct 16344 ACTGTACGCTGGGAAATTTCCCAAACGGTCTTGTACAGAGCTTTAATATCAGCAGGAATG 16403 Query 62090 TTTG---TATTCTGAATGGATCCACCATCTGCCATAATCCTATTCTTGATCTCATCATTC 62146 | | | |||||||| |||||| || || ||||| | ||||| || | ||| | Sbjct 16404 CTAGGGATGTTCTGAATAGATCCATTGTCCGCAATAATGCGGTTCTTCATATTGTCAGAC 16463 Query 62147 CATAA 62151 ||||| Sbjct 16464 CATAA 16468 >seq431 Length=155802 Score = 125 bits (138), Expect = 9e-24 Identities = 374/571 (65%), Gaps = 16/571 (3%) Strand=Plus/Minus Query 32652 AACATCAAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAA 32711 |||| || || || || ||| ||| || |||||||| | | ||| | ||||| || Sbjct 44199 AACAGCAGGCAAGCAAAGTCGGTGTGCAGGCCCTCGTCACGAGAAATGAGCTCGTTTGAG 44140 Query 32712 AACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCA 32771 || || || || ||||| || |||||||| ||||| || ||||| || || | || Sbjct 44139 AAGGTCAGACCAGGCATGAGACCACGCTTGCGCAGCCAGAAGATGGAGGCGAAGGCACCC 44080 Query 32772 GAAAAGAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACC--GGCGC 32829 || || || || || || || || |||||||||| || | || || ||| | | | Sbjct 44079 GAGAAAAAGATGCCCTCGACAGCAGCAAAGGCAACTAGGCGCTGGGCA-AACGTAGACTC 44021 Query 32830 --TGTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTC 32887 |||| |||||||| ||||||| |||||||| | || || || || || Sbjct 44020 CTTGTCGGTGATCCACTTCAGAGCCCAGTCGGCCTTGCGACGGATGCAGGGAATAGTGTC 43961 Query 32888 TATAGCATTAAAGAGATAGtttttttCATTACTA----TCTTTAACATATGTATCAATCA 32943 || ||||| || || || | | | | | | || || | || || ||||| | Sbjct 43960 AATGGCATTGAATAGGTA----TGTGCGCTGCGAGGGCTCCTTGATGTAGGTGTCAATTA 43905 Query 32944 AAAGACTATACATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAGCATC 33003 || ||| |||| ||||| |||||||| || || || || ||||||||||| | Sbjct 43904 GCAGCGAATAGGTTTCAGAATGGATGTTTTCCATCATGATCTGGAAACCGTAGAAGCACC 43845 Query 33004 TAGCCTCGGTAATCTGTACTTCTGTACAAAATCGTTCTGCTAAATTTTCATTCACTATTC 33063 ||||||| |||||| || || | || || || | | ||||| || || || | Sbjct 43844 GGGCCTCGGGAATCTGCACCTCGCCTGAGAAGCGCTCAACGAGGTTTTCGTTGACGATGC 43785 Query 33064 CGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTC--TGGTGT 33121 | ||| ||| ||||| || || | | || || || || | ||||| || | Sbjct 43784 CATCAGAGGCAGCAAAGAAGGCGAGAATGTGGGAGATGAAGTACTGCTCGTCCTTGTTCA 43725 Query 33122 TA-GTTTATTCCAATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATG 33180 | | || ||||| || | || ||| || || | ||| | ||||| | ||||| || | Sbjct 43724 GACGGTTGTTCCAGTCGTGGAGATCCTTGGAGAGATCAATCTCTTCAGCAGTCCAGAAGG 43665 Query 33181 ATGCCTCTGCCTTTTTATACATATTCCAGAT 33211 | ||||| ||||| || ||||| | |||||| Sbjct 43664 AAGCCTCGGCCTTCTTGTACATCTGCCAGAT 43634 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 633620871838000