Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceratocystis_20albifundus_20[genbank_20GCA_5F000813685.1_202015-01- 02] 1,405 sequences; 26,875,327 total letters Query= NC_008518.1 Length=174059 Score E Sequences producing significant alignments: (Bits) Value seq431 192 7e-44 >seq431 Length=155802 Score = 192 bits (212), Expect = 7e-44 Identities = 484/732 (66%), Gaps = 23/732 (3%) Strand=Plus/Minus Query 92927 TCAGCTACAAATTCTATGTACTGAGACATCAAATCACAATTCATTCCTAGAAGACGTACA 92986 || || ||||| || |||||||| ||||| ||| ||||||||||| |||| Sbjct 44355 TCCGCAACAAACTCAATGTACTGCTTCATCAGATCGGCGTTCATTCCTAGCAGACCGCAG 44296 Query 92987 GGTAGAGCGTCGGTCAAGAAATCTTTCTCGATTACAACGGCTTCTTTCAAGATTTCTATT 93046 || ||||| ||||||| ||| || |||||||| |||||||| || | | ||| || || Sbjct 44295 GGAAGAGCCTCGGTCAGGAACTCCTTCTCGATCACAACGGCATCAGTGATGAT--CTTTT 44238 Query 93047 ACTCTAC-TATTTGGTGG--------TTTTTGTACGACATAATTGTACATTAAGCACGCA 93097 | ||| | ||| ||| ||| || ||| | ||| | ||| ||| Sbjct 44237 GCACTAGGTCCTTGCTGGGGCGGTTGTTTAGGTGCGAGA-------ACAGCAGGCAAGCA 44185 Query 93098 AAGTCGGTATGTAAACCTTCGTCTCGTGATATCAACTCATTGCTGAATGTTAAACCTGGT 93157 |||||||| || | || ||||| || || || | ||| || ||| || | ||| || Sbjct 44184 AAGTCGGTGTGCAGGCCCTCGTCACGAGAAATGAGCTCGTTTGAGAAGGTCAGACCAGGC 44125 Query 93158 AACAGTCCTCGTTTCTTGAGCCAAAATATTGAAGCAAAACTACCAGaaaaaaaTATACCT 93217 | || || || || ||||| || || || || || ||| || ||||| || || Sbjct 44124 ATGAGACCACGCTTGCGCAGCCAGAAGATGGAGGCGAAGGCACCCGAGAAAAAGATGCCC 44065 Query 93218 TCCACGGCTGCAAATGCCACAATACGTTCGGCAAAATTTGCGGAATTACTGCTGATCCAT 93277 || || || ||||| || || | || | |||||| | | || | ||||||| Sbjct 44064 TCGACAGCAGCAAAGGCAACTAGGCGCTGGGCAAACGTAGACTCCTTGTCGGTGATCCAC 44005 Query 93278 TTTAAAGCCCAATCGGCTTTTTTCTTAATACAAGGTAGTGTTTCGATAGCGTTAAATAGG 93337 || | |||||| ||||| || || || || | || || || || || |||||| Sbjct 44004 TTCAGAGCCCAGTCGGCCTTGCGACGGATGCAGGGAATAGTGTCAATGGCATTGAATAGG 43945 Query 93338 TAATCTCGCT-CGTCCGAATCTCGTATGTATGTATCGATTAACAGAGAATACATTTCAGA 93396 || |||| || | || | ||||| || || |||| ||| ||||| ||||||| Sbjct 43944 TATGTGCGCTGCGAGGGCTCCTTG-ATGTAGGTGTCAATTAGCAGCGAATAGGTTTCAGA 43886 Query 93397 ATGGACATTCTCCATTGCAATTTGGAATCCGTAGAAACATCTAGCTTCCGTGATCTGCAC 93456 ||||| || ||||| || ||||| |||||||| || | || || | |||||||| Sbjct 43885 ATGGATGTTTTCCATCATGATCTGGAAACCGTAGAAGCACCGGGCCTCGGGAATCTGCAC 43826 Query 93457 TTCTTGAGAAAATCTCTCTACGAGATTTTCATTGACTATACCATCGGATGCTGCaaaaaa 93516 || || || | ||| ||||| ||||| ||||| || ||||| || || ||||| || Sbjct 43825 CTCGCCTGAGAAGCGCTCAACGAGGTTTTCGTTGACGATGCCATCAGAGGCAGCAAAGAA 43766 Query 93517 aGCCAATATATGCTTTATAAAATGTTTCTCATCATCTTT---AAGCTTATCCCAATCGGA 93573 || | || || || || | | ||| || | || | | || | ||| ||| Sbjct 43765 GGCGAGAATGTGGGAGATGAAGTACTGCTCGTCCTTGTTCAGACGGTTGTTCCAGTCGTG 43706 Query 93574 TAGATCTTTTGAAAGATCGACTTCTTCGACAGTCCAAAACGATGCTTCTGCTTTTTTGTA 93633 ||||| || || ||||| | ||||| ||||||| || || || || || || ||||| Sbjct 43705 GAGATCCTTGGAGAGATCAATCTCTTCAGCAGTCCAGAAGGAAGCCTCGGCCTTCTTGTA 43646 Query 93634 CATATCCCATAT 93645 ||| | ||| || Sbjct 43645 CATCTGCCAGAT 43634 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 556851020132200