Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceratocystis_20albifundus_20[genbank_20GCA_5F000813685.1_202015-01- 02] 1,405 sequences; 26,875,327 total letters Query= NC_008586.1 Length=131204 Score E Sequences producing significant alignments: (Bits) Value seq576 127 2e-24 seq1207 111 1e-19 seq492 84.2 2e-11 >seq576 Length=37320 Score = 127 bits (140), Expect = 2e-24 Identities = 159/218 (73%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 22229 TTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACCGATACCGTGG 22288 |||| || || | ||||| || || |||| || ||||| || || | |||||| | | Sbjct 12263 TTGTCAAGACCCTTACCGGCAAGACCATCACCCTCGAAGTCGAGTCCTCTGATACCATCG 12322 Query 22289 ACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAACAACGTCTTA 22348 || || |||| || || || || ||||||||||| || || ||||| || ||||| | Sbjct 12323 ACAATGTCAAGTCCAAGATCCAGGATAAGGAGGGTATCCCTCCGGATCAGCAGCGTCTCA 12382 Query 22349 TATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAACATTCAAAAAG 22408 | |||||||| || ||| | ||||| ||||||| | ||||| |||||||| || || | Sbjct 12383 TTTTTGCCGGAAAGCAGCTTGAGGACGGCCGCACCCTGTCCGACTACAACATCCAGAAGG 12442 Query 22409 AATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGT 22446 |||| || | || || ||| |||| |||| || ||| Sbjct 12443 AATCTACTCTTCACTTGGTTCTGCGTCTGCGTGGTGGT 12480 Score = 118 bits (130), Expect = 9e-22 Identities = 163/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 |||||||| ||||| || || | || || || || | || || || || || | | Sbjct 12481 ATGCAAATCTTTGTCAAGACCCTGACGGGCAAGACTATTACACTCGAGGTCGAGTCTTCG 12540 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 ||||| | ||| || |||| || || || || ||||||||||| || || ||||| Sbjct 12541 GATACTATTGACAATGTCAAGTCCAAGATCCAGGATAAGGAGGGTATCCCTCCGGATCAG 12600 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || ||||| || ||||| || || ||| | ||||| ||||||| |||| || |||||| Sbjct 12601 CAGCGTCTCATCTTTGCTGGAAAGCAGCTTGAGGACGGCCGCACCCTCTCTGACTACAAC 12660 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGT 22446 || || || ||||| || | ||||| ||| |||| |||| || ||| Sbjct 12661 ATCCAGAAGGAATCTACTCTTCATTTGGTTCTGCGTCTGCGTGGTGGT 12708 Score = 116 bits (128), Expect = 3e-21 Identities = 162/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 |||||||| ||||| || || | || || || || | || || || || || | | Sbjct 12709 ATGCAAATCTTTGTCAAGACCCTGACGGGCAAGACTATTACACTCGAGGTCGAGTCTTCG 12768 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 ||||| | ||| || |||| || || || |||||||||||||| || || || || Sbjct 12769 GATACTATTGACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGTATCCCTCCTGACCAG 12828 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || ||||| || ||||| || || || | |||||| |||||| |||| || |||||| Sbjct 12829 CAGCGTCTCATCTTTGCTGGAAAGCAACTCGAGGATGGTCGCACCCTCTCTGACTACAAC 12888 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGG 22445 || || || |||||||| | ||||| ||| |||| |||| || || Sbjct 12889 ATCCAGAAGGAATCCACTCTTCATTTGGTTCTGCGTCTGCGTGGTGG 12935 Score = 102 bits (112), Expect = 7e-17 Identities = 145/204 (71%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 22243 ACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACCGATACCGTGGACGATATCAAACAA 22302 ||||| || || |||| || || ||||| | | ||||| | ||| | | || Sbjct 11993 ACCGGCAAGACCATCACCCTCGAGGTGGAGTCTTCGGATACTATTGACAACGTTAAGTCT 12052 Query 22303 AAAATTCAAGACAAGGAGGGTATTCCACCCGATCAACAACGTCTTATATTTGCCGGCAAA 22362 || || || ||||||||||||||||| || || || || ||||| || || ||||| || Sbjct 12053 AAGATCCAGGACAAGGAGGGTATTCCTCCGGACCAGCAGCGTCTCATTTTCGCCGGAAAG 12112 Query 22363 CAGTTAGAGGATCACCGCACCGTCTCCGATTACAACATTCAAAAAGAATCCACCATACAT 22422 ||| | |||||| ||||||| | ||||| |||||||| || || || || || | ||| Sbjct 12113 CAGCTTGAGGATGGCCGCACCCTGTCCGACTACAACATCCAGAAGGAGTCTACTCTCCAT 12172 Query 22423 TTAGTTTTGCGATTGCGCGGAGGT 22446 |||| | || |||| || ||| Sbjct 12173 CTAGTGCTCCGCCTGCGTGGTGGT 12196 >seq1207 Length=77990 Score = 111 bits (122), Expect = 1e-19 Identities = 141/194 (73%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 22213 GTAAAGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAA 22272 || |||||||| ||||| || || || | || ||||| ||| | || || || || || Sbjct 69064 GTCAAGATGCAGATTTTCGTCAAGACCCTTACGGGTAAGACGATTACCCTCGAGGTTGAG 69123 Query 22273 ACCACCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCC 22332 || | || || | ||| || |||| || ||||| ||||||||||| ||||| || Sbjct 69124 TCCTCGGACACTATCGACAATGTCAAGTCTAAGATTCAGGACAAGGAGGGCATTCCCCCG 69183 Query 22333 GATCAACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGAT 22392 || || || || || || || || ||||| ||| | |||||| ||||||| | || || Sbjct 69184 GACCAGCAGCGCCTGATCTTCGCTGGCAAGCAGCTGGAGGATGGCCGCACCCTGTCTGAC 69243 Query 22393 TACAACATTCAAAA 22406 ||||||||||| || Sbjct 69244 TACAACATTCAGAA 69257 >seq492 Length=47418 Score = 84.2 bits (92), Expect = 2e-11 Identities = 105/144 (73%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 22303 AAAATTCAAGACAAGGAGGGTATTCCACCCGATCAACAACGTCTTATATTTGCCGGCAAA 22362 || || || ||||||||||| ||||| || || || || || | || ||||| ||||| Sbjct 44625 AAGATCCAGGACAAGGAGGGCATTCCCCCGGACCAGCAGCGCTTGATCTTTGCTGGCAAG 44684 Query 22363 CAGTTAGAGGATCACCGCACCGTCTCCGATTACAACATTCAAAAAGAATCCACCATACAT 22422 ||| | |||||| |||||| | ||||| |||||||| || || || ||||| | || Sbjct 44685 CAGCTTGAGGATGGCCGCACTCTGTCCGACTACAACATCCAGAAGGAGTCCACTCTCCAC 44744 Query 22423 TTAGTTTTGCGATTGCGCGGAGGT 22446 | || |||| |||| || ||| Sbjct 44745 CTTGTCCTGCGCCTGCGTGGTGGT 44768 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419720812813825