Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceratocystis_20albifundus_20[genbank_20GCA_5F000813685.1_202015-01- 02] 1,405 sequences; 26,875,327 total letters Query= NC_008603.1 Length=321240 Score E Sequences producing significant alignments: (Bits) Value seq431 127 4e-24 seq659 107 4e-18 >seq431 Length=155802 Score = 127 bits (140), Expect = 4e-24 Identities = 290/434 (67%), Gaps = 8/434 (2%) Strand=Plus/Minus Query 251563 TCGAAGAAATTAGACTTGCCCTCCAGAGAGATTAGCTCCATGAAGTCGAAGGGGTTTGTG 251622 || ||||| |||| |||||| | || ||||| ||||||||||||||||||||||||| Sbjct 44457 TCAAAGAAGTTAGTCTTGCCGCCGAGCGAGATGTTCTCCATGAAGTCGAAGGGGTTTGTG 44398 Query 251623 GCATTGTACTGCTTGGGATGGCCAAGTGCTACGAAGATGCGGTCTGCCACAAACTCCAGA 251682 ||| |||| ||| | ||| || || || | | |||||| || |||||||| | Sbjct 44397 GCACGGTACACCTTTTCGTTGCCTAGAGCAACAAGCAGGCGGTCCGCAACAAACTCAATG 44338 Query 251683 TACTGTCCCATCAGTTCAGAGTTCATGCCAATCATACGACAAGGAATTGCCTCACAGATG 251742 ||||| |||||| || | |||||| || | || || || |||| ||||| | | Sbjct 44337 TACTGCTTCATCAGATCGGCGTTCATTCCTAGCAGACCGCAGGGAAGAGCCTCGGTCAGG 44278 Query 251743 AATTCCTTTTCGTTGGCAACTGCCTCCTCCACAATTGCCTTCACCTG----TGCCAGAGA 251798 || ||||| ||| | |||| || || | || | ||| | | | | | Sbjct 44277 AACTCCTTCTCGATCACAACGGCATCAGTGATGATCTTTTGCACTAGGTCCTTGCTGGGG 44218 Query 251799 CAGCTTGTTCTCCAGCTTTGAGTACAGGAGCTCGCCAAACTGTTGGTGCAGACCCTCGTC 251858 | | ||||| || | ||| |||| || |||| | |||||| |||||||| Sbjct 44217 C-GGTTGTT---TAGGTGCGAGAACAGCAGGCAAGCAAAGTCGGTGTGCAGGCCCTCGTC 44162 Query 251859 GCGACTGATGAACTCGTTGGACAGACCCAGGCCAGGCATCACCCCACGGTTCCTGAGCCA 251918 ||| |||| |||||| || | ||| |||||||| | ||||| || | ||||| Sbjct 44161 ACGAGAAATGAGCTCGTTTGAGAAGGTCAGACCAGGCATGAGACCACGCTTGCGCAGCCA 44102 Query 251919 GAAGATTGCGCAAAAGGATCCAGAGAACAGCAGACCCTCGACACACACCCATGCAACAAG 251978 |||||| | | |||| || ||||| | | ||||||||| | | ||||| || Sbjct 44101 GAAGATGGAGGCGAAGGCACCCGAGAAAAAGATGCCCTCGACAGCAGCAAAGGCAACTAG 44042 Query 251979 GCGCTCAGCAAACG 251992 ||||| ||||||| Sbjct 44041 GCGCTGGGCAAACG 44028 >seq659 Length=28844 Score = 107 bits (118), Expect = 4e-18 Identities = 172/242 (71%), Gaps = 4/242 (2%) Strand=Plus/Plus Query 279326 AGAGAAGGA-GACTGAGCCAGGTGAGGATCTGTGTGACTGTGATTTCTCGCTCGCATATG 279384 |||| |||| ||| ||| |||||||||||||| |||| |||||| ||||| || | Sbjct 14040 AGAGGAGGATGAC-GAGGAGGGTGAGGATCTGTGCAACTGCACTTTCTCCCTCGCCTACG 14098 Query 279385 GTGGGAAGATTCTGCTAAACTCTACCCGCCTCAACATCAAGCGTGGCAACCGGTATGGTC 279444 ||| ||||| ||||| ||| || | ||| | |||||||| | || || |||| Sbjct 14099 GTGCCAAGATCCTGCTTAACCAGACTCACCTGCGTCTGAAGCGTGGTCAGCGCTACGGTC 14158 Query 279445 TCATCGGTCCCAATGGAGCGGGTAAGAGCACTCTAATGCGCGCCATTGCAAACGGTCAGC 279504 | |||||||||||| | || || |||||| ||||| ||||| |||| ||| Sbjct 14159 TGTGCGGTCCCAATGGTTCCGGAAAATCCACTCTGATGCGTGCCATCAACAACGAACAGG 14218 Query 279505 TGGAAGGATTTCCTAACGCA-TCTGAGGTAAGGACAGTGTATGTAGAGCACGACATCGAC 279563 | || || || || || ||| || ||||| | ||| || | || ||||||||| | ||| Sbjct 14219 TCGAGGGCTTCCCCAA-GCAGTCCGAGGTTAAGACTGTTTTCGTCGAGCACGACCTGGAC 14277 Query 279564 TC 279565 || Sbjct 14278 TC 14279 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1027818297331605