Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ceratocystis_20albifundus_20[genbank_20GCA_5F000813685.1_202015-01-
02] 1,405 sequences; 26,875,327 total letters
Query= NC_008603.1
Length=321240
Score E
Sequences producing significant alignments: (Bits) Value
seq431 127 4e-24
seq659 107 4e-18
>seq431
Length=155802
Score = 127 bits (140), Expect = 4e-24
Identities = 290/434 (67%), Gaps = 8/434 (2%)
Strand=Plus/Minus
Query 251563 TCGAAGAAATTAGACTTGCCCTCCAGAGAGATTAGCTCCATGAAGTCGAAGGGGTTTGTG 251622
|| ||||| |||| |||||| | || ||||| |||||||||||||||||||||||||
Sbjct 44457 TCAAAGAAGTTAGTCTTGCCGCCGAGCGAGATGTTCTCCATGAAGTCGAAGGGGTTTGTG 44398
Query 251623 GCATTGTACTGCTTGGGATGGCCAAGTGCTACGAAGATGCGGTCTGCCACAAACTCCAGA 251682
||| |||| ||| | ||| || || || | | |||||| || |||||||| |
Sbjct 44397 GCACGGTACACCTTTTCGTTGCCTAGAGCAACAAGCAGGCGGTCCGCAACAAACTCAATG 44338
Query 251683 TACTGTCCCATCAGTTCAGAGTTCATGCCAATCATACGACAAGGAATTGCCTCACAGATG 251742
||||| |||||| || | |||||| || | || || || |||| ||||| | |
Sbjct 44337 TACTGCTTCATCAGATCGGCGTTCATTCCTAGCAGACCGCAGGGAAGAGCCTCGGTCAGG 44278
Query 251743 AATTCCTTTTCGTTGGCAACTGCCTCCTCCACAATTGCCTTCACCTG----TGCCAGAGA 251798
|| ||||| ||| | |||| || || | || | ||| | | | | |
Sbjct 44277 AACTCCTTCTCGATCACAACGGCATCAGTGATGATCTTTTGCACTAGGTCCTTGCTGGGG 44218
Query 251799 CAGCTTGTTCTCCAGCTTTGAGTACAGGAGCTCGCCAAACTGTTGGTGCAGACCCTCGTC 251858
| | ||||| || | ||| |||| || |||| | |||||| ||||||||
Sbjct 44217 C-GGTTGTT---TAGGTGCGAGAACAGCAGGCAAGCAAAGTCGGTGTGCAGGCCCTCGTC 44162
Query 251859 GCGACTGATGAACTCGTTGGACAGACCCAGGCCAGGCATCACCCCACGGTTCCTGAGCCA 251918
||| |||| |||||| || | ||| |||||||| | ||||| || | |||||
Sbjct 44161 ACGAGAAATGAGCTCGTTTGAGAAGGTCAGACCAGGCATGAGACCACGCTTGCGCAGCCA 44102
Query 251919 GAAGATTGCGCAAAAGGATCCAGAGAACAGCAGACCCTCGACACACACCCATGCAACAAG 251978
|||||| | | |||| || ||||| | | ||||||||| | | ||||| ||
Sbjct 44101 GAAGATGGAGGCGAAGGCACCCGAGAAAAAGATGCCCTCGACAGCAGCAAAGGCAACTAG 44042
Query 251979 GCGCTCAGCAAACG 251992
||||| |||||||
Sbjct 44041 GCGCTGGGCAAACG 44028
>seq659
Length=28844
Score = 107 bits (118), Expect = 4e-18
Identities = 172/242 (71%), Gaps = 4/242 (2%)
Strand=Plus/Plus
Query 279326 AGAGAAGGA-GACTGAGCCAGGTGAGGATCTGTGTGACTGTGATTTCTCGCTCGCATATG 279384
|||| |||| ||| ||| |||||||||||||| |||| |||||| ||||| || |
Sbjct 14040 AGAGGAGGATGAC-GAGGAGGGTGAGGATCTGTGCAACTGCACTTTCTCCCTCGCCTACG 14098
Query 279385 GTGGGAAGATTCTGCTAAACTCTACCCGCCTCAACATCAAGCGTGGCAACCGGTATGGTC 279444
||| ||||| ||||| ||| || | ||| | |||||||| | || || ||||
Sbjct 14099 GTGCCAAGATCCTGCTTAACCAGACTCACCTGCGTCTGAAGCGTGGTCAGCGCTACGGTC 14158
Query 279445 TCATCGGTCCCAATGGAGCGGGTAAGAGCACTCTAATGCGCGCCATTGCAAACGGTCAGC 279504
| |||||||||||| | || || |||||| ||||| ||||| |||| |||
Sbjct 14159 TGTGCGGTCCCAATGGTTCCGGAAAATCCACTCTGATGCGTGCCATCAACAACGAACAGG 14218
Query 279505 TGGAAGGATTTCCTAACGCA-TCTGAGGTAAGGACAGTGTATGTAGAGCACGACATCGAC 279563
| || || || || || ||| || ||||| | ||| || | || ||||||||| | |||
Sbjct 14219 TCGAGGGCTTCCCCAA-GCAGTCCGAGGTTAAGACTGTTTTCGTCGAGCACGACCTGGAC 14277
Query 279564 TC 279565
||
Sbjct 14278 TC 14279
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1027818297331605
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |