Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceratocystis_20albifundus_20[genbank_20GCA_5F000813685.1_202015-01- 02] 1,405 sequences; 26,875,327 total letters Query= NC_008724.1 Length=288047 Score E Sequences producing significant alignments: (Bits) Value seq492 154 3e-32 seq431 134 3e-26 seq1207 132 9e-26 seq576 131 3e-25 seq659 91.5 3e-13 >seq492 Length=47418 Score = 154 bits (170), Expect = 3e-32 Identities = 165/218 (76%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || || || ||||||| || | ||| || |||||||| || |||||||| || ||||| Sbjct 44767 CCACCACGCAGGCGCAGGACAAGGTGGAGAGTGGACTCCTTCTGGATGTTGTAGTCGGAC 44708 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | ||||| || | |||||| || || || || | | || ||||| || ||| Sbjct 44707 AGAGTGCGGCCATCCTCAAGCTGCTTGCCAGCAAAGATCAAGCGCTGCTGGTCCGGGGGA 44648 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 ||||| |||||||| || ||||| | ||||||| ||||| ||||| | || || || Sbjct 44647 ATGCCCTCCTTGTCCTGGATCTTGGACTTGACGTTGTCGATCGTGTCCGAAGACTCGACC 44588 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAA 68452 |||| ||| ||||| || ||||| |||||||||||||| Sbjct 44587 TCCAGGGTAATGGTCTTACCCGTCAGGGTCTTGACGAA 44550 >seq431 Length=155802 Score = 134 bits (148), Expect = 3e-26 Identities = 308/459 (67%), Gaps = 10/459 (2%) Strand=Plus/Minus Query 9939 ACGCCCGCCTTCTGGTACTCCGATACCCGGCGCTCGAAGAAGTTGGACTTGCCCTCGAGG 9998 || || ||||||||||| || || || ||| |||||||| | |||||| |||| Sbjct 44490 ACACCAGCCTTCTGGTAATCACCGACACGCTTCTCAAAGAAGTTAGTCTTGCCGCCGAGC 44431 Query 9999 GAAATGAGCTCCATGAAGTCAAAGGGGTTCTCGGCGCCAAACTGCTTGGGGTAACCGAGT 10058 || ||| |||||||||||| |||||||| ||| | || ||| || || || Sbjct 44430 GAGATGTTCTCCATGAAGTCGAAGGGGTTTGTGGCACGGTACACCTTTTCGTTGCCTAGA 44371 Query 10059 GCTGTGAAAATGCGGTCAGCCACGAACTCGATGTACTGGCTCATCAGGTCCGAGTTCATG 10118 || | | |||||| || || ||||| |||||||| ||||||| || | |||||| Sbjct 44370 GCAACAAGCAGGCGGTCCGCAACAAACTCAATGTACTGCTTCATCAGATCGGCGTTCATT 44311 Query 10119 CCAATCATGCGGCAGGGGATGGCGTCGCAAATGAAGTCCTTTTCGTTGGCGACCGCTTCC 10178 || | || | |||||| | || ||| | ||| ||||| ||| | | || || || Sbjct 44310 CCTAGCAGACCGCAGGGAAGAGCCTCGGTCAGGAACTCCTTCTCGATCACAACGGCATCA 44251 Query 10179 TCGACGATGCTCTTTACCACGTC----AAGGGACAGCTTGTTCTCGAGCTTCGAATACAG 10234 || ||| | | || | ||| ||| | | ||||| || | ||| |||| Sbjct 44250 GTGATGATCTTTTGCACTAGGTCCTTGCTGGGGC-GGTTGTT---TAGGTGCGAGAACAG 44195 Query 10235 GAGCTCTCCAAACTGCTGGTGGAGGCCCTCGTCGCGGCTGATGAACTCGTTGGACAAACC 10294 || |||| | ||| ||||||||||| || |||| |||||| || || Sbjct 44194 CAGGCAAGCAAAGTCGGTGTGCAGGCCCTCGTCACGAGAAATGAGCTCGTTTGAGAAGGT 44135 Query 10295 CAGACCGGGCATGAGCCCCCGGTTGCGCAGCCAGAAAATGGCGCAGAACGACCCGGAGAA 10354 |||||| |||||||| || || |||||||||||||| |||| | ||| | || ||||| Sbjct 44134 CAGACCAGGCATGAGACCACGCTTGCGCAGCCAGAAGATGGAGGCGAAGGCACCCGAGAA 44075 Query 10355 CAGAAGACCCTCCAC-GCACACCCAGGCGACGAGGCGCT 10392 | | ||||| || ||| | |||| || ||||||| Sbjct 44074 AAAGATGCCCTCGACAGCA-GCAAAGGCAACTAGGCGCT 44037 >seq1207 Length=77990 Score = 132 bits (146), Expect = 9e-26 Identities = 142/188 (76%), Gaps = 0/188 (0%) Strand=Plus/Minus Query 68274 TTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATG 68333 || || ||||| || || || || || | ||||| || | |||||| || ||||| || Sbjct 69257 TTCTGAATGTTGTAGTCAGACAGGGTGCGGCCATCCTCCAGCTGCTTGCCAGCGAAGATC 69198 Query 68334 AGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCG 68393 || | || ||||| || |||||||| |||||||| |||||||| | |||||| ||| Sbjct 69197 AGGCGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCCTGAATCTTAGACTTGACATTGTCG 69138 Query 68394 ATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAAT 68453 || ||||| | || || || || | ||| || || || ||||| |||||||||||||| Sbjct 69137 ATAGTGTCCGAGGACTCAACCTCGAGGGTAATCGTCTTACCCGTAAGGGTCTTGACGAAA 69078 Query 68454 ATCTGCAT 68461 |||||||| Sbjct 69077 ATCTGCAT 69070 >seq576 Length=37320 Score = 131 bits (144), Expect = 3e-25 Identities = 158/215 (73%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || || || || |||| |||||||| || || || || || |||||||| || ||||| Sbjct 12479 CCACCACGCAGACGCAGAACCAAGTGAAGAGTAGATTCCTTCTGGATGTTGTAGTCGGAC 12420 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | || || || | |||||| ||||| || ||||| | || || || || || Sbjct 12419 AGGGTGCGGCCGTCCTCAAGCTGCTTTCCGGCAAAAATGAGACGCTGCTGATCCGGAGGG 12360 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 || || ||||| || || ||||| | |||||| |||||||| || | || || ||| Sbjct 12359 ATACCCTCCTTATCCTGGATCTTGGACTTGACATTGTCGATGGTATCAGAGGACTCGACT 12300 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGAC 68449 || | ||||||||| || || || ||||||||||| Sbjct 12299 TCGAGGGTGATGGTCTTGCCGGTAAGGGTCTTGAC 12265 Score = 123 bits (136), Expect = 5e-23 Identities = 169/236 (72%), Gaps = 0/236 (0%) Strand=Plus/Minus Query 68226 TTTTAATTTCCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTA 68285 ||||| | || || || || |||| ||||| || || ||||| || || |||||||| Sbjct 12944 TTTTACTGGCCACCACGCAGACGCAGAACCAAATGAAGAGTGGATTCCTTCTGGATGTTG 12885 Query 68286 TAATCGGAGAGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGG 68345 || || ||||| || | ||||| || | ||||| || || || ||||| | || ||| Sbjct 12884 TAGTCAGAGAGGGTGCGACCATCCTCGAGTTGCTTTCCAGCAAAGATGAGACGCTGCTGG 12825 Query 68346 TCGGGTGGAATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCT 68405 || || || || || |||||||| || ||||| | |||||| || || || || | Sbjct 12824 TCAGGAGGGATACCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCAATAGTATCCGAA 12765 Query 68406 GATTCTACTTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 || || || || | || || || || ||||| ||||||||||| || || ||||| Sbjct 12764 GACTCGACCTCGAGTGTAATAGTCTTGCCCGTCAGGGTCTTGACAAAGATTTGCAT 12709 Score = 107 bits (118), Expect = 4e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || || || || |||| ||||| || || || || || || |||||||| || || ||| Sbjct 12707 CCACCACGCAGACGCAGAACCAAATGAAGAGTAGATTCCTTCTGGATGTTGTAGTCAGAG 12648 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | || || || | |||||| || || || ||||| | || || || || || Sbjct 12647 AGGGTGCGGCCGTCCTCAAGCTGCTTTCCAGCAAAGATGAGACGCTGCTGATCCGGAGGG 12588 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 || || ||||| || || ||||| | |||||| || || || || | || || || Sbjct 12587 ATACCCTCCTTATCCTGGATCTTGGACTTGACATTGTCAATAGTATCCGAAGACTCGACC 12528 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 || | || || || || ||||| ||||||||||| || || ||||| Sbjct 12527 TCGAGTGTAATAGTCTTGCCCGTCAGGGTCTTGACAAAGATTTGCAT 12481 >seq659 Length=28844 Score = 91.5 bits (100), Expect = 3e-13 Identities = 476/751 (63%), Gaps = 43/751 (6%) Strand=Plus/Minus Query 225267 CCTTGGAAGTAATACCCTCCAGGAACCCGGGCTCGGGGAACTCCCACTTGGTCACCGCGT 225326 |||||| | | |||||| ||||| |||||||||||||| | | || | | | Sbjct 14779 CCTTGGTCTTCACACCCTCAAGGAAACCGGGCTCGGGGAAGGTGAATTCCATCTCAGAGG 14720 Query 225327 CCTTCAGGTCGTAGTAAGATGCAGCCTCGGGTCGCTTTGCCACGAAAGCAGACAGGTTTC 225386 | || |||||||| || ||| ||| | ||| || || | | |||||| | Sbjct 14719 CACCGAGCTCGTAGTATGACTTGGCCGAGGGGCACTTCTTGACAAACTCGGCCAGGTTAC 14660 Query 225387 CGAGGTGCTTCGTGAGCTTGAGGTTCTTCTCGTAATGAACAAT-TGCCGAGCACACTGCG 225445 | ||| | | ||||||| | || |||| || ||||| ||| | ||| || | Sbjct 14659 CACGGTAACGCTTAAGCTTGAAGCGCT---CGTAGTGGACAATGTGCTG-GCAGACGTTG 14604 Query 225446 TCAAGGAAGCCAGAGTCGTGGGACACAATGATGGACGACACGTTCGTCAGGCCCTTGAGG 225505 |||||||||||||||||||| || || |||||||| | | ||| ||| Sbjct 14603 TCAAGGAAGCCAGAGTCGTGAGAGACGATGATGGAAGT-------GCAAGGA----GAGT 14555 Query 225506 TGC----GTGATG----AGCCATGCCACGTTGCTGACGTCCATGTGGTTTGTAGGTTCGT 225557 ||| || || ||||| ||||| | || |||| ||||| ||||| |||| Sbjct 14554 TGCACAGGTAATCCTCCAGCCACTTGACGTTCTTCACATCCAAATGGTTGGTAGGCTCGT 14495 Query 225558 CCAGAAGCAGGATGTCAGCATCAATGAGGATGGCGCGCGTGAGAGACAGCTTCATTTTCC 225617 | |||||||| || |||| | || | ||| || || | ||||||||| |||| Sbjct 14494 CAAGAAGCAGAATATCAGGGGCCTCGAAAACGGCACGGCACAGGGCCAGCTTCATCTTCC 14435 Query 225618 AGCCCCCGGACAGGGAGCCGATTGAAACAG-AGTGCTTAGCTTCGTCAAAGCCGTACTCC 225676 | || || || || | | ||| | ||| | | || ||| || || |||| |||| Sbjct 14434 AACCACCAGAAAGAGCGGAGATCTCACCAGTAATCATTTGCTCAGTGAA-GCCGAACTCG 14376 Query 225677 AGGAGCGTCTGGATAATGCGCTCGGGAGAGCTGCGAGCGGCAACGTTGGGGTCGGACGAG 225736 ||| || ||| | | ||| | | | || | ||||||| ||| | | || Sbjct 14375 TTCAGCTGCTTGATGACGTCCTCCTTGGTGGT---AGTG---ACGTTGGCGTCAGCC-AG 14323 Query 225737 A--------GGT--AATCATATACGGTCATGTCCGAGACAGACGCGTCAATGTCGTGGTC 225786 ||| | ||| |||||| || | | ||| | ||| | |||||| || Sbjct 14322 CTTCTTCATGGTCCATTCAATGGTGGTCATCTCAGTGTCAGCAGAGTCCAGGTCGTGCTC 14263 Query 225787 CACGTACACCGTCCGGAGCTGAGAAGCATCGGGGAAGCCCTCCAGCTGGCCATTTGCAAT 225846 ||| | || ||| | || || | |||||||||||| | ||| | || || Sbjct 14262 GACGAAAACAGTCTTAACCTCGGACTGCTTGGGGAAGCCCTCGACCTGTTCGTTGTTGAT 14203 Query 225847 CGCACGGAGCAGGGTACTCTTGCCCGCGCCGTTGGGACCGATGAGGCCGTAATGATTCCC 225906 ||||| | ||| || || || | || ||||||||| || ||||| | | || Sbjct 14202 GGCACGCATCAGAGTGGATTTTCCGGAACCATTGGGACCGCACAGACCGTAGCGCTGACC 14143 Query 225907 GCGCTTGATGTTGAGGCGCGTGGAGTTCAGGAGGATCTTGCCACCATAGGCAAGGGAGAA 225966 ||||| | ||| | || ||| || ||||||||| |||| ||||| |||||||| Sbjct 14142 ACGCTTCAGACGCAGGTGAGTCTGGTTAAGCAGGATCTTGGCACCGTAGGCGAGGGAGAA 14083 Query 225967 CTCGCAATCGCACAGGTCCTCACCCTCCTCG 225997 ||| | |||||| ||||||||||||||| Sbjct 14082 AGTGCAGTTGCACAGATCCTCACCCTCCTCG 14052 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 921606214006600