Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceratocystis_20albifundus_20[genbank_20GCA_5F000813685.1_202015-01- 02] 1,405 sequences; 26,875,327 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq431 309 6e-79 seq539 140 6e-28 >seq431 Length=155802 Score = 309 bits (342), Expect = 6e-79 Identities = 602/870 (69%), Gaps = 48/870 (6%) Strand=Plus/Plus Query 42300 ATCTGGTCCATGTACAAGAAGGCGCAGTTCTCCAACTGGACCGCCGAGGAGATTGACCTG 42359 |||||| |||||||||||||| || ||| |||||| || || |||||||| || Sbjct 43634 ATCTGGCAGATGTACAAGAAGGCCGAGGCTTCCTTCTGGACTGCTGAAGAGATTGATCTC 43693 Query 42360 GCCAAGGACACGGCCGGCTGGGAGTCACTGTCTGA----GAACGAAAAGTTTTTCCTCAA 42415 ||||||| || |||| | || |||||| | |||| ||| ||| || Sbjct 43694 TCCAAGGATCTCCACGACTGGAACA-ACCGTCTGAACAAGGACGAGCAGTACTTCATCTC 43752 Query 42416 AAACATACTGGCCTTCTTCGCCGCCTCTGACGGCATAGTCAATGAGAACCTGGCCACCAG 42475 |||| || |||||||| || |||||||| ||||| ||||| || ||||| | | Sbjct 43753 CCACATTCTCGCCTTCTTTGCTGCCTCTGATGGCATCGTCAACGAAAACCTCGTTGAGCG 43812 Query 42476 GTTCATGAAAGAGGTGCAGTACTTTGAGGCGCGCTGCTTCTACGGCTTCCAGATAGCCAT 42535 ||| ||||||||| ||||| || ||||||||||| |||||||| || Sbjct 43813 CTTCTCAGGCGAGGTGCAGATTCCCGAGGCCCGGTGCTTCTACGGTTTCCAGATCATGAT 43872 Query 42536 AGAGAACGTGCACTCTGAGGTGTACGCCAAACTGCTCA---ACACGTACATCCTGGATCC 42592 || ||| | || ||||| || | ||||| | |||| |||||| ||| || Sbjct 43873 GGAAAACATCCATTCTGAAACCTATTCG---CTGCTAATTGACACCTACATCAAGGAGCC 43929 Query 42593 CGTCG-AGCGTAACGGGCTGTTCAAGGCCATGGAGACGATGCCCTGCATCAAGAAGAAGG 42651 | ||| |||| | || ||||| ||||| || || || ||||||||| |||| Sbjct 43930 C-TCGCAGCGCACATACCTATTCAATGCCATTGACACTATTCCCTGCATCCGTCGCAAGG 43988 Query 42652 CGGACTGGGCGCTCAACTGGATCGAGAGTCCCGACG-CAACGTTCGGCGAGAGGCTGGTA 42710 | |||||||| || || |||||| | | | | | | ||||| | | || | || || Sbjct 43989 CCGACTGGGCTCTGAAGTGGATC-ACCGACAAGGAGTCTACGTTTGCCCAGCGCCTAGTT 44047 Query 42711 GCCTTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCCATCTTCTGGCT- 42769 |||||| | || |||||||||||||| |||||||| ||||||||||||||||||||||| Sbjct 44048 GCCTTTGCTGCTGTCGAGGGCATCTTTTTCTCGGGTGCCTTCGCCTCCATCTTCTGGCTG 44107 Query 42770 --CAAGCAGAAGGTGTCGATGCCCGGACTCACCTTCTCGAACGAACTCATCAGCAGGGAC 42827 ||||| ||| || ||||| || || |||||||| ||||| ||||| | ||| Sbjct 44108 CGCAAGC--GTGGTCTC-ATGCCTGGTCTGACCTTCTCAAACGAGCTCATTTCTCGTGAC 44164 Query 42828 GAGGGGCTGCATAGGGACTTTGCCTGCCTCCTGTTCTCGAGCCACCTCAGGCACAA--GC 42885 ||||| ||||| | |||||||| ||||| ||||||||| ||||| | |||| || Sbjct 44165 GAGGGCCTGCACACCGACTTTGCTTGCCTGCTGTTCTCG---CACCTAA---ACAACCGC 44218 Query 42886 CCTCG-AAGGAGCGGGTCCGGGCCATCATCACGGAGGCCGTGGAGATCGAGAAGGAGTTC 42944 || | ||||| | || | |||||||| || ||||| | |||||||||||||||| Sbjct 44219 CCCAGCAAGGACCTAGTGCAAAAGATCATCACTGATGCCGTTGTGATCGAGAAGGAGTTC 44278 Query 42945 CTCACGCAGTCGCTGCCCGTGTCCCTGGTCGGCATGAACCACGACCTCATGTGCAAGTAC 43004 || || || | || ||| ||| | || |||||| ||| || ||| ||||| Sbjct 44279 CTGACCGAGGCTCTTCCCTGCGGTCTGCTAGGAATGAACGCCGATCTGATGAAGCAGTAC 44338 Query 43005 ATCCAGTACGTCGCCGACCATCTCCTGTGCCAGATGGGTCTCAGCCGCCTCTACAACACG 43064 || ||| || || |||| || || || | | ||| || || | | || | Sbjct 44339 ATTGAGTTTGTTGCGGACCGCCTGCT-TG-----TTGCTCT-AG--GCAACGAAAAGGTG 44389 Query 43065 --CCGTG-------CCCCTTCGACTTTATGGAGAACATCTCGTTGGAGGGCAAGACCAAC 43115 ||||| |||||||||||| ||||||||||||||| | | |||||||| ||| Sbjct 44390 TACCGTGCCACAAACCCCTTCGACTTCATGGAGAACATCTCGCTCGGCGGCAAGACTAAC 44449 Query 43116 TTTTTCGAGAAGCGCGTCGCCGACTACCAG 43145 || || |||||||| |||| || |||||| Sbjct 44450 TTCTTTGAGAAGCGTGTCGGTGATTACCAG 44479 >seq539 Length=40911 Score = 140 bits (154), Expect = 6e-28 Identities = 830/1319 (63%), Gaps = 41/1319 (3%) Strand=Plus/Plus Query 244090 GTTCACCACCTGAAACTCTCCCGACAGCACGCGGCGCTGGTAGAGGTTGCTGCTGAGCGG 244149 ||| |||||||| ||||| || | || |||||||||||||||| |||| || || Sbjct 16502 GTTGACCACCTGGAACTCGCCAGCAAGAACGCGGCGCTGGTAGATGTTGGATGTGTAGGG 16561 Query 244150 CTCGATGCTCTCCGTGTTGCCCAGTATCTGCGCCGTGCTCGCAGTCGGCATGGGCGACAC 244209 |||| || ||| |||||||||| ||||||| ||||| || || |||||||| | || Sbjct 16562 TTCGAAGCACTCATTGTTGCCCAGAATCTGCGATGTGCTGGCTGTAGGCATGGGTGCAAC 16621 Query 244210 CAGCAGACTGTTCCTCACGCCGTGCCTCTGGATG--CGGAGTCTGAGCTCGTTCCAGTCC 244267 ||| ||| || | || || ||| | || | || ||| |||||||| Sbjct 16622 CAGAAGAGAATTGCGTACACCATGCTGTTTAATCTTCTCCTTCAGAGAAG--TCCAGTCC 16679 Query 244268 CACATGCC-CGAGAGGTCCTCGCGTTTGAGGCCCCACATGTCAAACTGCAGCAGCCCCTT 244326 |||| | | | || ||| | | ||||||| |||||||||| | || | Sbjct 16680 CACAGGTCACTAGGAGTCA---CAT-------CCCACATATCAAACTGCAAGATACCTTG 16729 Query 244327 GCTGACGGGGCTGCCCTCGTAGGTCGGGTAGGGACCGTCGCGCTGGGCCAGCTTACAGCT 244386 | ||| ||| ||||| ||||| | ||| | ||| || |||||| | || || | Sbjct 16730 GGAGACAGGGGAACCCTCATAGGTTGAGTAAGTACCCTCCGTCTGGGCGAT-TTCCAT-T 16787 Query 244387 CTCGTCG--AGGGCGGCGTAGTAGATGGTCTCGAAGATCATCTTGTTCATGTCGCGGGCC 244444 | | || ||||||| ||||||||| || || ||| ||||| | | ||| || Sbjct 16788 GAAGCAGTTAGTGCGGCGTGGTAGATGGTTTCAAAAATCTGTTTGTTAAGCTGGCGTGCT 16847 Query 244445 TTGCCGCAGGTGAAGGGGATGCCCATCATCATGAAGACGTCGGCCAGTCCCTGCACGCCG 244504 | | | | ||| || |||| | | ||| | || |||| ||||| || || Sbjct 16848 TCGGGGGATTCGAAAGGCATGCGGAGAGCAAGGAAAGCATCAGCCAAGCCCTGTACACCA 16907 Query 244505 ATGCCGATGGGTCTGTGTCGCTTGTTGGAGCGCATGGCTTCGGGCACGGGGTAAAAGTTG 244564 | || ||||| | ||| ||| ||||| | ||||| | || ||||| || Sbjct 16908 ACACCAATGGGACGGTGGCGCATGTTGCTGTTGTGAGCTTCCTGGACAGGGTAGTGATTC 16967 Query 244565 CCGTCGATCACCTTGTTGAGGTTGCGGGTGATCATGCGGACGACGTCGGCCAGCAGCTGA 244624 | || || | ||| |||||||| | | | ||| ||| ||| | | Sbjct 16968 ACATCAATGATGCGGTTTAGGTTGCGAACAACAACTTGAGTGACTTCGTGTAGCTTTTTA 17027 Query 244625 AAGTCGTACTCGTAGGGATCCTCGGCGATGGTGATCCTCACAAACTCGTTGAGGGCGACG 244684 ||||| ||||| | ||| | | || ||| || || ||||| | Sbjct 17028 AAGTCATACTC------ACCCTTG----TTGTAGTCC--ACGAAGGAAGGAAGGGCCAGA 17075 Query 244685 CTGGCCAGGTTGCAGACGGCCACCTCCTCCGAGTTGGTGTACTGGACAATCTCGGTGCAG 244744 || |||||||| || || ||||| || | | |||| || |||||| ||||| Sbjct 17076 GATGCTAGGTTGCACACAGCAACCTCGTCAGGGGCACAATACTCGATAATCTCAGTGCAC 17135 Query 244745 AGGTTACTGCACTTGATGGTGCCCAGGTGCTGGTGATTGGACTTGGCGTTGCAGGCGTCC 244804 ||||| || |||||| || || | | |||||| |||| |||||| ||| Sbjct 17136 AGGTTTGAGCTGCGGATGGTACCTAGATTTTTCTGATTGCTCTTGCGGTTGCAATGGTCT 17195 Query 244805 TTGTAGAGCATGAAGGGCCCCCCGGTCTCGAGCTGGGCGACGAGGACGCTGTTCCAGAGG 244864 ||||| |||||||| || || ||||| |||||| | || | | | ||| || Sbjct 17196 TTGTAAAGCATGAAAGGGTTGCCAGTCTCAGTCTGGGCCTCCAGAATGGCATACCACAGC 17255 Query 244865 TCCCTAGCCTTGACCGTCCTGCGAGCCTTGCCCTCTGCCTCGTAGCGGGTGTACAGGGCC 244924 | | |||||||| | ||||| | ||||| |||||| ||||| ||| Sbjct 17256 TTCTGGGCCTTGACAACCGTGCGACCGCGACCCTCCTTCTCGTACTTTTCATACAGAGCC 17315 Query 244925 TCGAACTCGGGGCCCCAGACCTCGTCTAGGCCGGGGCACGACGCCGGGCACATGAGACTC 244984 || ||||| ||| || || | | ||||||||| |||||||||||| || Sbjct 17316 TCAAACTCTTCGCCATAGCAATCCGCCAAGCCGGGGCATTCATTGGGGCACATGAGAGTC 17375 Query 244985 CACTCGCCGCCGTCCTTGACCCTCTGCATGAAGAGGTCGGGGATCCAGAGGGCCTGGAAG 245044 || || | | || || | || |||||| | |||| |||||| |||||| ||| Sbjct 17376 CAGTCCTCATTTTTCTCAACACGCTTCATGAACAAGTCGCAGATCCACAGGGCCAAGAAT 17435 Query 245045 AGGTCCCTGGTCCTCTGCTCGTCCGAGCCAGTGTTCTTCCTCAGCTCCAAAAAGTCAAAG 245104 ||||| | | | || ||| || |||||| | || || | || || ||| Sbjct 17436 AGGTCACGAGCACGGACTTCTTCCTTTCCGTGGTTCTTGCGCAAGTCGAGGAACTCGAAG 17495 Query 245105 ACGTCGACGTGCCAGGGCTCCATGTAGACAGCGAGGGCGCCGGGCCGCTTGTTGCCTCCC 245164 || || | ||||| ||||| | ||| | || | ||| || || |||||||| || ||| Sbjct 17496 ACATCAGCATGCCATGGCTCGAGGTAAATGGCAAAGGCTCCAGGTCGCTTGTTTCCACCC 17555 Query 245165 TGGTCCACCATCCTCTCGAGCG-CGTTGAAGATGCGCAGGGTAGGCACTATGCCGTTAGA 245223 |||| || ||| || | |||||| | || || | || || || ||||| || Sbjct 17556 TGGT-CAACATAACGGGCAGTGTTGTTGAAAACACGTAGCATGGGAACGATACCGTTCGA 17614 Query 245224 GTGGCCGTTGGTGCCCTTGATGTAGGCGCCCTTGCCCCTGAGGTTGCTGATGGACAT--- 245280 ||||| || || ||||| | ||| || | | | | | | ||||||| Sbjct 17615 AGTACCGTTAGTACCAGCAATGTAAGAGCCAGTGGCAC---GAATAC-GGTGGACATTGA 17670 Query 245281 -GCCTAGTCCGCCGGCGTGCTTGGAGATGAGGGCGCAGCTCTTGATGGTGTCTGCTATGC 245339 || | ||||| || |||||| || | ||| || |||||| ||| || |||| Sbjct 17671 GACCGATACCGCCAGCCATCTTGGAAATCATGGCACAAGTCTTGAGGGTATCGTAAATGC 17730 Query 245340 CCTCCATGCTGTCCGACTTCATGTTGAGCAGAAAGCAGGAGGACAGCTGGGGCTTGGGG 245398 |||| |||||||| ||||||| || || ||||| || |||| ||| | || |||| Sbjct 17731 CCTCGATGCTGTCATCTTTCATGTCGACTAGGAAGCACGAAGACAACTGAGCCTGGGGG 17789 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 944322615042800