Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceratocystis_20albifundus_20[genbank_20GCA_5F000813685.1_202015-01- 02] 1,405 sequences; 26,875,327 total letters Query= NC_009899.1 Length=344691 Score E Sequences producing significant alignments: (Bits) Value seq431 125 2e-23 seq659 86.0 1e-11 >seq431 Length=155802 Score = 125 bits (138), Expect = 2e-23 Identities = 313/467 (67%), Gaps = 10/467 (2%) Strand=Plus/Plus Query 243289 TTTGCTGAGCGTCTCGTCGCCTGGGTGTGC-GTTGAAGGTATTCTGTTTTCCGGGAGT-T 243346 ||||| |||| || || |||| | ||| || || || || || ||| |||| | | Sbjct 44030 TTTGCCCAGCGCCTAGTTGCCTTTGC-TGCTGTCGAGGGCAT-CTTTTTCTCGGGTGCCT 44087 Query 243347 TCTGCGCCATCTTTTGGCTGCGGAACAAAGGTGTGATGCCTGGCCTCGGTCTGTCTAACG 243406 || | ||||||| |||||||| || ||| | |||||||| || | || |||| Sbjct 44088 TCGCCTCCATCTTCTGGCTGCGCAAGCGTGGTCTCATGCCTGGTCTGACCTTCTCAAACG 44147 Query 243407 AGTTCATCAGTCGCGACGAGGGCCTTCACCAACAGTTCGGTGAGCTTATGTATTCAAAGC 243466 || |||| ||| ||||||||||| ||| | || | | || ||| || || Sbjct 44148 AGCTCATTTCTCGTGACGAGGGCCTGCACACCGACTTTGCTTGCCTGCTGTTCTC---GC 44204 Query 243467 TCCAGAACAAGCTACCATTCGAA-ACG--GTCAAACAAATCATCACAGAAGCAGTTGAAA 243523 || ||||| | || | | || || || | |||||||| || || |||| | Sbjct 44205 ACCTAAACAACCGCCCCAGCAAGGACCTAGTGCAAAAGATCATCACTGATGCCGTTGTGA 44264 Query 243524 ACGAAAAGGAATTCATTTGCGACGCTATTCCATGCCGGCTTATTGGCATGAACTCTGAAC 243583 ||| ||||| ||| | ||| ||| |||| ||| | || | || |||||| | || | Sbjct 44265 TCGAGAAGGAGTTCCTGACCGAGGCTCTTCCCTGCGGTCTGCTAGGAATGAACGCCGATC 44324 Query 243584 TCATGGGACAGTACATCGAATTCGTAGCCGACCGCATTTTCATCGCGCTTGGTTATGAGA 243643 | ||| |||||||| || || || || |||||| | | | || || || | || | Sbjct 44325 TGATGAAGCAGTACATTGAGTTTGTTGCGGACCGCCTGCTTGTTGCTCTAGGCAACGAAA 44384 Query 243644 AAGTGTACAACTCCAAGAACCCCTTTGCCTTTATGGAGCTCATTTCGCTTCAAGGGAAAA 243703 | |||||| ||| |||||||| | ||| |||||| ||| ||||| || || | Sbjct 44385 AGGTGTACCGTGCCACAAACCCCTTCGACTTCATGGAGAACATCTCGCTCGGCGGCAAGA 44444 Query 243704 CTAACTTCTTCGAAAAGCGTGTCAGTGATTATCAACGCCCTGGTGTG 243750 |||||||||| || ||||||||| ||||||| || |||||||| Sbjct 44445 CTAACTTCTTTGAGAAGCGTGTCGGTGATTACCAGAAGGCTGGTGTG 44491 >seq659 Length=28844 Score = 86.0 bits (94), Expect = 1e-11 Identities = 154/222 (69%), Gaps = 6/222 (3%) Strand=Plus/Minus Query 334136 GTCGAGATCGTGTTCCACGTAAGCAGTTTTCAAAACATCCG-CAGA--GGGGAACCCTTC 334192 ||| || ||||| || ||| || |||| || ||| || | | | |||||| || || Sbjct 14277 GTCCAGGTCGTGCTCGACGAAAACAGTCTT---AACCTCGGACTGCTTGGGGAAGCCCTC 14221 Query 334193 AAGCTGACCGTTCACAATAGCGCGCATCAGAGTTGATTTACCCGCCCCGTTTGGCCCACA 334252 | ||| |||| || || ||||||||||| ||||| || | || || || || || Sbjct 14220 GACCTGTTCGTTGTTGATGGCACGCATCAGAGTGGATTTTCCGGAACCATTGGGACCGCA 14161 Query 334253 CAGACCGTAGCGGTTTCCACGCTTCAGATTGAACCGCGTATTGTTCAGAAGAATTTTTCC 334312 |||||||||||| | |||||||||||| | | || | ||| || || || || | Sbjct 14160 CAGACCGTAGCGCTGACCACGCTTCAGACGCAGGTGAGTCTGGTTAAGCAGGATCTTGGC 14101 Query 334313 ACCATATGCCAGAGAAAATTCACAATCACACAGATCCTCACC 334354 ||| || || || || || || | |||||||||||||| Sbjct 14100 ACCGTAGGCGAGGGAGAAAGTGCAGTTGCACAGATCCTCACC 14059 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1102860146436750