Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceratocystis_20albifundus_20[genbank_20GCA_5F000813685.1_202015-01- 02] 1,405 sequences; 26,875,327 total letters Query= NC_011183.1 Length=154641 Score E Sequences producing significant alignments: (Bits) Value seq539 185 9e-42 >seq539 Length=40911 Score = 185 bits (204), Expect = 9e-42 Identities = 490/739 (66%), Gaps = 16/739 (2%) Strand=Plus/Minus Query 93898 CCGACCCTGTTCAACGCGGGGACCCCGGTGCCACAGATGTCTTCGTGTTTCCTGAT-GAC 93956 || || || || || || || ||||| | | ||| |||||||||| ||||| | ||| Sbjct 17812 CCTACGCTCTTTAATGCTGGTACCCCCCAGGCTCAGTTGTCTTCGTGCTTCCTAGTCGAC 17753 Query 93957 GAACAAGGCCGACTCCATCTCCGGAATTTTCGACAGCCTCAAGGACTGTGCGACCATCTC 94016 | || | ||| |||| || |||| ||| | ||||||| ||||| | || || Sbjct 17752 -ATGAAAGATGACAGCATCGAGGGCATTTACGATACCCTCAAGACTTGTGCCATGATTTC 17694 Query 94017 AAAATACGCGGGGGGAATCGGGATCAGTGTCCACGACGTA--CGTGCCAGGGGTTCCTAC 94074 || || || || ||||| ||| ||||||| |||| ||||||| || || ||| Sbjct 17693 CAAGATGGCTGGCGGTATCGGTCTCAATGTCCAC--CGTATTCGTGCCACTGGCTCTTAC 17636 Query 94075 ATCCGCGGTACCAATGGCACCTCCAACGGCCTCGTCCCTATGCTCCGGGTCTTCAACAAC 94134 || ||||| || || || || ||||| |||| || ||||| || || ||||||||| Sbjct 17635 ATTGCTGGTACTAACGGTACTTCGAACGGTATCGTTCCCATGCTACGTGTTTTCAACAAC 17576 Query 94135 GCGGCGCGCTACGTGGACCAGGGTGGTGGGAGGAGGAAGGGTTCTTTCGCGGTCTATCTC 94194 | || || || || ||||||||||| | | | || | || || | || ||| Sbjct 17575 ACTGCCCGTTATGTTGACCAGGGTGGAAACAAGCGACCTGGAGCCTTTGCCATTTACCTC 17516 Query 94195 GAGCCCTGGCACGCGGACGTGCAGGCTTTCATCGACCTGCGAAAGAACCACGGCAACGAT 94254 ||||| ||||| || || || | ||| ||||| |||| ||||||||||| || || Sbjct 17515 GAGCCATGGCATGCTGATGTCTTCGAGTTCCTCGACTTGCGCAAGAACCACGGAAAGGAA 17456 Query 94255 CTGGAGAGGGCCAGAGACCTCTTCTACGCTCTCTGGGTGCCAGACCTTTTTATGAAACGC 94314 | | || | ||||| |||| || || ||| | ||| | || ||||| || Sbjct 17455 GAAGTCCGTGCTCGTGACCTATTCTTGGCCCTGTGGATCTGCGACTTGTTCATGAAGCGT 17396 Query 94315 GTCGAGAAAAACTCCGCCTGGAGTCTTTTTTGTCCCAATGAATGTCCCGGACTGTCCGAC 94374 || |||||||| | ||||| ||| | || ||||||||||| ||||| || | || Sbjct 17395 GTTGAGAAAAATGAGGACTGGACTCTCATGTGCCCCAATGAATGCCCCGGCTTGGCGGA- 17337 Query 94375 GTTTGTGGATCGCG----TTTTGAAGACTTGTATGCTCGTTACGAATCGCAGGG-CAAGG 94429 ||| || ||| ||||| | |||||| ||||| | |||| | || Sbjct 17336 --TTG-CTATGGCGAAGAGTTTGAGGCTCTGTATGAAAAGTACGAGAAGGAGGGTCGCGG 17280 Query 94430 CCAGGAAGGTTATGGATGCTAGGAAGCTGTGGGATCAGATCGTGGACGTACAGGTGGAGA 94489 | | | |||| | | || |||||||||| || || |||| | ||| |||| Sbjct 17279 TC-GCACGGTTGTCAAGGCCCAGAAGCTGTGGTATGCCATTCTGGAGGCCCAGACTGAGA 17221 Query 94490 CGGGTACGCCCTACATCTTGTTCAAGGACTCTGTCAACGCCAAGTCCAACCAGCAGCACC 94549 | || | || | ||| | | ||| ||| | |||| |||| ||| ||| | | | Sbjct 17220 CTGGCAACCCTTTCATGCTTTACAAAGACCATTGCAACCGCAAGAGCAATCAGAAAAATC 17161 Query 94550 TCGGGGTGATCAAGAGCTCGAATCTGTGCACCGAGATTGTCGAGTATACTTCTCCGGACG 94609 | || ||| ||||| || |||||||| |||||| |||||||| | | || |||| Sbjct 17160 TAGGTACCATCCGCAGCTCAAACCTGTGCACTGAGATTATCGAGTATTGTGCCCCTGACG 17101 Query 94610 AGATTGCTGTGTGTAACCT 94628 || |||||||||| ||||| Sbjct 17100 AGGTTGCTGTGTGCAACCT 17082 Score = 116 bits (128), Expect = 4e-21 Identities = 197/280 (70%), Gaps = 4/280 (1%) Strand=Plus/Minus Query 95095 CTGCTTGTGGCCCCCATGCCCACGGCCTCCACGGCGCAGATCCTTGGCAACAACGAGTCG 95154 || || || || |||||||| || ||| ||| ||||||| || |||||||| |||| Sbjct 16627 CTTCTGGTTGCACCCATGCCTACAGCCAGCACATCGCAGATTCTGGGCAACAATGAGTGC 16568 Query 95155 TTCGAACCCTTCACCTCCAACGTGTACAACAGGCGGGTGCTCGCCGGGGAATTCCCCGTC 95214 |||||||||| ||| |||||| | ||| | | || || || || || || |||| || Sbjct 16567 TTCGAACCCTACACATCCAACATCTACCAGCGCCGCGTTCTTGCTGGCGAGTTCCAGGTG 16508 Query 95215 ATCAACAAGCACCTCCTACGGGACCT-GACGTCTCTGGGTGTGTGGGGTGACAAGGTCAA 95273 ||||| |||||||| ||||| | || ||| ||| | ||| |||||| | || Sbjct 16507 GTCAACCCCTGGCTCCTACGTGACCTTGTCGA-TCTTGGTTTATGGTCTGACAATATGAA 16449 Query 95274 GAACCA-ACTGCTACGCGCCAACGGCTCCGTCCAGAACATCCCGCAAATACCGGAGGACA 95332 ||||| | | | || | ||| || || | ||||||||||| || || | || | Sbjct 16448 GAACCGCATTATTGCG-GACAATGGATCTATTCAGAACATCCCTAGCATTCCTGCTGATA 16390 Query 95333 TCAAGGCGCTCTACAAGACCGTGTGGGAGATCCCGCAGCG 95372 | || || || ||||||||||| ||||| || | ||||| Sbjct 16389 TTAAAGCTCTGTACAAGACCGTTTGGGAAATTTCCCAGCG 16350 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 494714511423800