Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ceratocystis_20albifundus_20[genbank_20GCA_5F000813685.1_202015-01-
02] 1,405 sequences; 26,875,327 total letters
Query= NC_011183.1
Length=154641
Score E
Sequences producing significant alignments: (Bits) Value
seq539 185 9e-42
>seq539
Length=40911
Score = 185 bits (204), Expect = 9e-42
Identities = 490/739 (66%), Gaps = 16/739 (2%)
Strand=Plus/Minus
Query 93898 CCGACCCTGTTCAACGCGGGGACCCCGGTGCCACAGATGTCTTCGTGTTTCCTGAT-GAC 93956
|| || || || || || || ||||| | | ||| |||||||||| ||||| | |||
Sbjct 17812 CCTACGCTCTTTAATGCTGGTACCCCCCAGGCTCAGTTGTCTTCGTGCTTCCTAGTCGAC 17753
Query 93957 GAACAAGGCCGACTCCATCTCCGGAATTTTCGACAGCCTCAAGGACTGTGCGACCATCTC 94016
| || | ||| |||| || |||| ||| | ||||||| ||||| | || ||
Sbjct 17752 -ATGAAAGATGACAGCATCGAGGGCATTTACGATACCCTCAAGACTTGTGCCATGATTTC 17694
Query 94017 AAAATACGCGGGGGGAATCGGGATCAGTGTCCACGACGTA--CGTGCCAGGGGTTCCTAC 94074
|| || || || ||||| ||| ||||||| |||| ||||||| || || |||
Sbjct 17693 CAAGATGGCTGGCGGTATCGGTCTCAATGTCCAC--CGTATTCGTGCCACTGGCTCTTAC 17636
Query 94075 ATCCGCGGTACCAATGGCACCTCCAACGGCCTCGTCCCTATGCTCCGGGTCTTCAACAAC 94134
|| ||||| || || || || ||||| |||| || ||||| || || |||||||||
Sbjct 17635 ATTGCTGGTACTAACGGTACTTCGAACGGTATCGTTCCCATGCTACGTGTTTTCAACAAC 17576
Query 94135 GCGGCGCGCTACGTGGACCAGGGTGGTGGGAGGAGGAAGGGTTCTTTCGCGGTCTATCTC 94194
| || || || || ||||||||||| | | | || | || || | || |||
Sbjct 17575 ACTGCCCGTTATGTTGACCAGGGTGGAAACAAGCGACCTGGAGCCTTTGCCATTTACCTC 17516
Query 94195 GAGCCCTGGCACGCGGACGTGCAGGCTTTCATCGACCTGCGAAAGAACCACGGCAACGAT 94254
||||| ||||| || || || | ||| ||||| |||| ||||||||||| || ||
Sbjct 17515 GAGCCATGGCATGCTGATGTCTTCGAGTTCCTCGACTTGCGCAAGAACCACGGAAAGGAA 17456
Query 94255 CTGGAGAGGGCCAGAGACCTCTTCTACGCTCTCTGGGTGCCAGACCTTTTTATGAAACGC 94314
| | || | ||||| |||| || || ||| | ||| | || ||||| ||
Sbjct 17455 GAAGTCCGTGCTCGTGACCTATTCTTGGCCCTGTGGATCTGCGACTTGTTCATGAAGCGT 17396
Query 94315 GTCGAGAAAAACTCCGCCTGGAGTCTTTTTTGTCCCAATGAATGTCCCGGACTGTCCGAC 94374
|| |||||||| | ||||| ||| | || ||||||||||| ||||| || | ||
Sbjct 17395 GTTGAGAAAAATGAGGACTGGACTCTCATGTGCCCCAATGAATGCCCCGGCTTGGCGGA- 17337
Query 94375 GTTTGTGGATCGCG----TTTTGAAGACTTGTATGCTCGTTACGAATCGCAGGG-CAAGG 94429
||| || ||| ||||| | |||||| ||||| | |||| | ||
Sbjct 17336 --TTG-CTATGGCGAAGAGTTTGAGGCTCTGTATGAAAAGTACGAGAAGGAGGGTCGCGG 17280
Query 94430 CCAGGAAGGTTATGGATGCTAGGAAGCTGTGGGATCAGATCGTGGACGTACAGGTGGAGA 94489
| | | |||| | | || |||||||||| || || |||| | ||| ||||
Sbjct 17279 TC-GCACGGTTGTCAAGGCCCAGAAGCTGTGGTATGCCATTCTGGAGGCCCAGACTGAGA 17221
Query 94490 CGGGTACGCCCTACATCTTGTTCAAGGACTCTGTCAACGCCAAGTCCAACCAGCAGCACC 94549
| || | || | ||| | | ||| ||| | |||| |||| ||| ||| | | |
Sbjct 17220 CTGGCAACCCTTTCATGCTTTACAAAGACCATTGCAACCGCAAGAGCAATCAGAAAAATC 17161
Query 94550 TCGGGGTGATCAAGAGCTCGAATCTGTGCACCGAGATTGTCGAGTATACTTCTCCGGACG 94609
| || ||| ||||| || |||||||| |||||| |||||||| | | || ||||
Sbjct 17160 TAGGTACCATCCGCAGCTCAAACCTGTGCACTGAGATTATCGAGTATTGTGCCCCTGACG 17101
Query 94610 AGATTGCTGTGTGTAACCT 94628
|| |||||||||| |||||
Sbjct 17100 AGGTTGCTGTGTGCAACCT 17082
Score = 116 bits (128), Expect = 4e-21
Identities = 197/280 (70%), Gaps = 4/280 (1%)
Strand=Plus/Minus
Query 95095 CTGCTTGTGGCCCCCATGCCCACGGCCTCCACGGCGCAGATCCTTGGCAACAACGAGTCG 95154
|| || || || |||||||| || ||| ||| ||||||| || |||||||| ||||
Sbjct 16627 CTTCTGGTTGCACCCATGCCTACAGCCAGCACATCGCAGATTCTGGGCAACAATGAGTGC 16568
Query 95155 TTCGAACCCTTCACCTCCAACGTGTACAACAGGCGGGTGCTCGCCGGGGAATTCCCCGTC 95214
|||||||||| ||| |||||| | ||| | | || || || || || || |||| ||
Sbjct 16567 TTCGAACCCTACACATCCAACATCTACCAGCGCCGCGTTCTTGCTGGCGAGTTCCAGGTG 16508
Query 95215 ATCAACAAGCACCTCCTACGGGACCT-GACGTCTCTGGGTGTGTGGGGTGACAAGGTCAA 95273
||||| |||||||| ||||| | || ||| ||| | ||| |||||| | ||
Sbjct 16507 GTCAACCCCTGGCTCCTACGTGACCTTGTCGA-TCTTGGTTTATGGTCTGACAATATGAA 16449
Query 95274 GAACCA-ACTGCTACGCGCCAACGGCTCCGTCCAGAACATCCCGCAAATACCGGAGGACA 95332
||||| | | | || | ||| || || | ||||||||||| || || | || |
Sbjct 16448 GAACCGCATTATTGCG-GACAATGGATCTATTCAGAACATCCCTAGCATTCCTGCTGATA 16390
Query 95333 TCAAGGCGCTCTACAAGACCGTGTGGGAGATCCCGCAGCG 95372
| || || || ||||||||||| ||||| || | |||||
Sbjct 16389 TTAAAGCTCTGTACAAGACCGTTTGGGAAATTTCCCAGCG 16350
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 494714511423800
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |