Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceratocystis_20albifundus_20[genbank_20GCA_5F000813685.1_202015-01- 02] 1,405 sequences; 26,875,327 total letters Query= NC_011345.1 Length=155122 Score E Sequences producing significant alignments: (Bits) Value seq576 104 2e-17 seq431 100 3e-16 seq1207 84.2 2e-11 >seq576 Length=37320 Score = 104 bits (114), Expect = 2e-17 Identities = 162/229 (71%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 138387 GCCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCT 138446 ||| || |||| ||||| ||| ||||| | | || ||||| || ||||||||||| Sbjct 12936 GCCACCACGCAGACGCAGAACCAAATGAAGAGTGGATTCCTTCTGGATGTTGTAGTCAGA 12877 Query 138447 CATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGG 138506 | || || ||||||||||| || || | | |||| |||||||| ||||| ||||| Sbjct 12876 GAGGGTGCGACCATCCTCGAGTTGCTTTCCAGCAAAGATGAGACGCTGCTGGTCAGGAGG 12817 Query 138507 TATACCTTCTTTGTCGGTGATTTTTTGTTTTA-ATTGTTCCACGGTGTCGGTCGACTCCA 138565 ||||| || ||||| ||| || || | |||| || | || || | ||||| | Sbjct 12816 GATACCCTCCTTGTCCTGGATCTTGGACTTGACATTG-TCAATAGTATCCGAAGACTCGA 12758 Query 138566 CCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 |||||| || | || || || ||||| || || ||||| || ||||| Sbjct 12757 CCTCGAGTGTAATAGTCTTGCCCGTCAGGGTCTTGACAAAGATTTGCAT 12709 Score = 93.3 bits (102), Expect = 4e-14 Identities = 159/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || || |||| ||||| ||| ||||| | | || ||||| || ||||||||||| Sbjct 12707 CCACCACGCAGACGCAGAACCAAATGAAGAGTAGATTCCTTCTGGATGTTGTAGTCAGAG 12648 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | || || |||||| || || || || | | |||| |||||||| || |||||||| Sbjct 12647 AGGGTGCGGCCGTCCTCAAGCTGCTTTCCAGCAAAGATGAGACGCTGCTGATCCGGAGGG 12588 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTA-ATTGTTCCACGGTGTCGGTCGACTCCAC 138566 ||||| || || || ||| || || | |||| || | || || | ||||| || Sbjct 12587 ATACCCTCCTTATCCTGGATCTTGGACTTGACATTG-TCAATAGTATCCGAAGACTCGAC 12529 Query 138567 CTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 ||||| || | || || || ||||| || || ||||| || ||||| Sbjct 12528 CTCGAGTGTAATAGTCTTGCCCGTCAGGGTCTTGACAAAGATTTGCAT 12481 Score = 84.2 bits (92), Expect = 2e-11 Identities = 151/218 (69%), Gaps = 2/218 (1%) Strand=Plus/Minus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || || |||| ||||| ||| || || | | || ||||| || |||||||||||| | Sbjct 12479 CCACCACGCAGACGCAGAACCAAGTGAAGAGTAGATTCCTTCTGGATGTTGTAGTCGGAC 12420 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | || || |||||| || || || |||| | | || |||||||| || |||||||| Sbjct 12419 AGGGTGCGGCCGTCCTCAAGCTGCTTTCCGGCAAAAATGAGACGCTGCTGATCCGGAGGG 12360 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTA-ATTGTTCCACGGTGTCGGTCGACTCCAC 138566 ||||| || || || ||| || || | |||| || | ||| || | ||||| || Sbjct 12359 ATACCCTCCTTATCCTGGATCTTGGACTTGACATTG-TCGATGGTATCAGAGGACTCGAC 12301 Query 138567 CTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAA 138604 |||| || | || || || || || || || |||| Sbjct 12300 TTCGAGGGTGATGGTCTTGCCGGTAAGGGTCTTGACAA 12263 >seq431 Length=155802 Score = 100 bits (110), Expect = 3e-16 Identities = 328/504 (65%), Gaps = 23/504 (5%) Strand=Plus/Plus Query 52344 AAGGCTCAGTGGGCAATGAAGTGGATCGAGAGCGACACCG---CCACGCTGGCCGAGCGC 52400 ||||| | ||||| ||||||||||| | ||||| | | ||| | ||| ||||| Sbjct 43985 AAGGCCGACTGGGCTCTGAAGTGGATC---ACCGACAAGGAGTCTACGTTTGCCCAGCGC 44041 Query 52401 ATGGTGGCCTTCGCCATAGTCGAGGGCGTGtttttttCCGGCAGCTTTGCCGCCATCTTT 52460 | || ||||| || ||||||||| | ||||| || || ||| ||| ||||||| Sbjct 44042 CTAGTTGCCTTTGCTGCTGTCGAGGGCATCTTTTTCTCGGGTGCCTTCGCCTCCATCTTC 44101 Query 52461 TACATTAAAACGAAAGGCATAATGCCCGGCCTGACGTTCAGCAACGAGTTGATATCGCGC 52520 | | | | || | ||||| || ||||| ||| |||||| | || || || Sbjct 44102 TGGCTGCGCAAGCGTGGTCTCATGCCTGGTCTGACCTTCTCAAACGAGCTCATTTCTCGT 44161 Query 52521 GACGAAGGACTGCACACGGACTTTGCGTGCCT-CTACTACAAGACGCGCGTGACCGAAAA 52579 ||||| || |||||||| |||||||| ||||| || | | ||| ||| ||| Sbjct 44162 GACGAGGGCCTGCACACCGACTTTGCTTGCCTGCTGTT------CTCGC---ACCTAAAC 44212 Query 52580 ATTGGATTCGGACACGATCCTGAGC-----ATGTTCAAGGAGGCGGTGGCTATCGAAAAG 52634 | | | | | || | | || || ||| || || || | ||||| ||| Sbjct 44213 AACCGCCCCAGCAAGGACCTAGTGCAAAAGATCATCACTGATGCCGTTGTGATCGAGAAG 44272 Query 52635 GAGTTTTTTACGGCCGCGCTGCCGGTCGAGCTGCTGGGCATGAACGCGCAGTCCATGTGC 52694 ||||| | || | || || || || ||||| || |||||||| | ||| Sbjct 44273 GAGTTCCTGACCGAGGCTCTTCCCTGCGGTCTGCTAGGAATGAACGCCGATCTGATGAAG 44332 Query 52695 GAGTACATCGAGTTTGTGGCGGATCGTCTG-TTGGTGCAGCTCGGGCAGCCAAAGTACTT 52753 ||||||| |||||||| ||||| || ||| ||| ||| || || | |||| | Sbjct 44333 CAGTACATTGAGTTTGTTGCGGACCGCCTGCTTGTTGC-TCTAGGCAACGAAAAGGTGTA 44391 Query 52754 CAACGCTCGCAATCCGTTTGAGTTTATGAACAACATTTCGCTTGAGGGCAAGACCAACTT 52813 | || || || || || || ||| | ||||| ||||| | |||||||| ||||| Sbjct 44392 CCGTGCCACAAACCCCTTCGACTTCATGGAGAACATCTCGCTCGGCGGCAAGACTAACTT 44451 Query 52814 TTTCGAGAAGCGAGTCGGCGAGTA 52837 || |||||||| ||||| || || Sbjct 44452 CTTTGAGAAGCGTGTCGGTGATTA 44475 >seq1207 Length=77990 Score = 84.2 bits (92), Expect = 2e-11 Identities = 136/192 (71%), Gaps = 4/192 (2%) Strand=Plus/Minus Query 138425 CCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGA 138484 |||| |||||||||||||| || || || ||||| || || || || | ||| Sbjct 69259 CCTTCTGAATGTTGTAGTCAGACAGGGTGCGGCCATCCTCCAGCTGCTTGCCAGCGAAGA 69200 Query 138485 TTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTG--TTTTAATTG 138542 | || ||||| |||||||| || || || || ||||| ||| | || | || |||| Sbjct 69199 TCAGGCGCTGCTGGTCCGGGGGAATGCCCTCCTTGTC-CTGAATCTTAGACTTGACATTG 69141 Query 138543 TTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTAC 138602 || | ||||| | ||||| ||||||| || | ||| ||||| || || || || || Sbjct 69140 -TCGATAGTGTCCGAGGACTCAACCTCGAGGGTAATCGTCTTACCCGTAAGGGTCTTGAC 69082 Query 138603 AAAAATCTGCAT 138614 ||||||||||| Sbjct 69081 GAAAATCTGCAT 69070 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496253684391600