Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ceratocystis_20albifundus_20[genbank_20GCA_5F000813685.1_202015-01-
02] 1,405 sequences; 26,875,327 total letters
Query= NC_011345.1
Length=155122
Score E
Sequences producing significant alignments: (Bits) Value
seq576 104 2e-17
seq431 100 3e-16
seq1207 84.2 2e-11
>seq576
Length=37320
Score = 104 bits (114), Expect = 2e-17
Identities = 162/229 (71%), Gaps = 2/229 (1%)
Strand=Plus/Minus
Query 138387 GCCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCT 138446
||| || |||| ||||| ||| ||||| | | || ||||| || |||||||||||
Sbjct 12936 GCCACCACGCAGACGCAGAACCAAATGAAGAGTGGATTCCTTCTGGATGTTGTAGTCAGA 12877
Query 138447 CATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGG 138506
| || || ||||||||||| || || | | |||| |||||||| ||||| |||||
Sbjct 12876 GAGGGTGCGACCATCCTCGAGTTGCTTTCCAGCAAAGATGAGACGCTGCTGGTCAGGAGG 12817
Query 138507 TATACCTTCTTTGTCGGTGATTTTTTGTTTTA-ATTGTTCCACGGTGTCGGTCGACTCCA 138565
||||| || ||||| ||| || || | |||| || | || || | ||||| |
Sbjct 12816 GATACCCTCCTTGTCCTGGATCTTGGACTTGACATTG-TCAATAGTATCCGAAGACTCGA 12758
Query 138566 CCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614
|||||| || | || || || ||||| || || ||||| || |||||
Sbjct 12757 CCTCGAGTGTAATAGTCTTGCCCGTCAGGGTCTTGACAAAGATTTGCAT 12709
Score = 93.3 bits (102), Expect = 4e-14
Identities = 159/228 (70%), Gaps = 2/228 (1%)
Strand=Plus/Minus
Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447
|| || |||| ||||| ||| ||||| | | || ||||| || |||||||||||
Sbjct 12707 CCACCACGCAGACGCAGAACCAAATGAAGAGTAGATTCCTTCTGGATGTTGTAGTCAGAG 12648
Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507
| || || |||||| || || || || | | |||| |||||||| || ||||||||
Sbjct 12647 AGGGTGCGGCCGTCCTCAAGCTGCTTTCCAGCAAAGATGAGACGCTGCTGATCCGGAGGG 12588
Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTA-ATTGTTCCACGGTGTCGGTCGACTCCAC 138566
||||| || || || ||| || || | |||| || | || || | ||||| ||
Sbjct 12587 ATACCCTCCTTATCCTGGATCTTGGACTTGACATTG-TCAATAGTATCCGAAGACTCGAC 12529
Query 138567 CTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614
||||| || | || || || ||||| || || ||||| || |||||
Sbjct 12528 CTCGAGTGTAATAGTCTTGCCCGTCAGGGTCTTGACAAAGATTTGCAT 12481
Score = 84.2 bits (92), Expect = 2e-11
Identities = 151/218 (69%), Gaps = 2/218 (1%)
Strand=Plus/Minus
Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447
|| || |||| ||||| ||| || || | | || ||||| || |||||||||||| |
Sbjct 12479 CCACCACGCAGACGCAGAACCAAGTGAAGAGTAGATTCCTTCTGGATGTTGTAGTCGGAC 12420
Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507
| || || |||||| || || || |||| | | || |||||||| || ||||||||
Sbjct 12419 AGGGTGCGGCCGTCCTCAAGCTGCTTTCCGGCAAAAATGAGACGCTGCTGATCCGGAGGG 12360
Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTA-ATTGTTCCACGGTGTCGGTCGACTCCAC 138566
||||| || || || ||| || || | |||| || | ||| || | ||||| ||
Sbjct 12359 ATACCCTCCTTATCCTGGATCTTGGACTTGACATTG-TCGATGGTATCAGAGGACTCGAC 12301
Query 138567 CTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAA 138604
|||| || | || || || || || || || ||||
Sbjct 12300 TTCGAGGGTGATGGTCTTGCCGGTAAGGGTCTTGACAA 12263
>seq431
Length=155802
Score = 100 bits (110), Expect = 3e-16
Identities = 328/504 (65%), Gaps = 23/504 (5%)
Strand=Plus/Plus
Query 52344 AAGGCTCAGTGGGCAATGAAGTGGATCGAGAGCGACACCG---CCACGCTGGCCGAGCGC 52400
||||| | ||||| ||||||||||| | ||||| | | ||| | ||| |||||
Sbjct 43985 AAGGCCGACTGGGCTCTGAAGTGGATC---ACCGACAAGGAGTCTACGTTTGCCCAGCGC 44041
Query 52401 ATGGTGGCCTTCGCCATAGTCGAGGGCGTGtttttttCCGGCAGCTTTGCCGCCATCTTT 52460
| || ||||| || ||||||||| | ||||| || || ||| ||| |||||||
Sbjct 44042 CTAGTTGCCTTTGCTGCTGTCGAGGGCATCTTTTTCTCGGGTGCCTTCGCCTCCATCTTC 44101
Query 52461 TACATTAAAACGAAAGGCATAATGCCCGGCCTGACGTTCAGCAACGAGTTGATATCGCGC 52520
| | | | || | ||||| || ||||| ||| |||||| | || || ||
Sbjct 44102 TGGCTGCGCAAGCGTGGTCTCATGCCTGGTCTGACCTTCTCAAACGAGCTCATTTCTCGT 44161
Query 52521 GACGAAGGACTGCACACGGACTTTGCGTGCCT-CTACTACAAGACGCGCGTGACCGAAAA 52579
||||| || |||||||| |||||||| ||||| || | | ||| ||| |||
Sbjct 44162 GACGAGGGCCTGCACACCGACTTTGCTTGCCTGCTGTT------CTCGC---ACCTAAAC 44212
Query 52580 ATTGGATTCGGACACGATCCTGAGC-----ATGTTCAAGGAGGCGGTGGCTATCGAAAAG 52634
| | | | | || | | || || ||| || || || | ||||| |||
Sbjct 44213 AACCGCCCCAGCAAGGACCTAGTGCAAAAGATCATCACTGATGCCGTTGTGATCGAGAAG 44272
Query 52635 GAGTTTTTTACGGCCGCGCTGCCGGTCGAGCTGCTGGGCATGAACGCGCAGTCCATGTGC 52694
||||| | || | || || || || ||||| || |||||||| | |||
Sbjct 44273 GAGTTCCTGACCGAGGCTCTTCCCTGCGGTCTGCTAGGAATGAACGCCGATCTGATGAAG 44332
Query 52695 GAGTACATCGAGTTTGTGGCGGATCGTCTG-TTGGTGCAGCTCGGGCAGCCAAAGTACTT 52753
||||||| |||||||| ||||| || ||| ||| ||| || || | |||| |
Sbjct 44333 CAGTACATTGAGTTTGTTGCGGACCGCCTGCTTGTTGC-TCTAGGCAACGAAAAGGTGTA 44391
Query 52754 CAACGCTCGCAATCCGTTTGAGTTTATGAACAACATTTCGCTTGAGGGCAAGACCAACTT 52813
| || || || || || || ||| | ||||| ||||| | |||||||| |||||
Sbjct 44392 CCGTGCCACAAACCCCTTCGACTTCATGGAGAACATCTCGCTCGGCGGCAAGACTAACTT 44451
Query 52814 TTTCGAGAAGCGAGTCGGCGAGTA 52837
|| |||||||| ||||| || ||
Sbjct 44452 CTTTGAGAAGCGTGTCGGTGATTA 44475
>seq1207
Length=77990
Score = 84.2 bits (92), Expect = 2e-11
Identities = 136/192 (71%), Gaps = 4/192 (2%)
Strand=Plus/Minus
Query 138425 CCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGA 138484
|||| |||||||||||||| || || || ||||| || || || || | |||
Sbjct 69259 CCTTCTGAATGTTGTAGTCAGACAGGGTGCGGCCATCCTCCAGCTGCTTGCCAGCGAAGA 69200
Query 138485 TTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTG--TTTTAATTG 138542
| || ||||| |||||||| || || || || ||||| ||| | || | || ||||
Sbjct 69199 TCAGGCGCTGCTGGTCCGGGGGAATGCCCTCCTTGTC-CTGAATCTTAGACTTGACATTG 69141
Query 138543 TTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTAC 138602
|| | ||||| | ||||| ||||||| || | ||| ||||| || || || || ||
Sbjct 69140 -TCGATAGTGTCCGAGGACTCAACCTCGAGGGTAATCGTCTTACCCGTAAGGGTCTTGAC 69082
Query 138603 AAAAATCTGCAT 138614
|||||||||||
Sbjct 69081 GAAAATCTGCAT 69070
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 496253684391600
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |