Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ceratocystis_20albifundus_20[genbank_20GCA_5F000813685.1_202015-01-
02] 1,405 sequences; 26,875,327 total letters
Query= NC_011616.1
Length=148634
Score E
Sequences producing significant alignments: (Bits) Value
seq492 111 1e-19
seq431 111 1e-19
seq576 107 2e-18
seq1207 105 6e-18
seq539 93.3 4e-14
>seq492
Length=47418
Score = 111 bits (122), Expect = 1e-19
Identities = 140/190 (74%), Gaps = 2/190 (1%)
Strand=Plus/Minus
Query 126917 GTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCA 126976
|| ||||| || || || ||||| ||| || ||||| ||| || ||||| || |||
Sbjct 44737 GTGGACTCCTTCTGGATGTTGTAGTCGGACAGAGTGCGGCCATCCTCAAGCTGCTTGCCA 44678
Query 126977 GCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTG 127036
|| ||||||| |||||||| || || || ||||||||||||||| ||| || ||||
Sbjct 44677 GCAAAGATCAAGCGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCCTGGATCTTGGACTTG 44618
Query 127037 A-GTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGT 127095
| |||| |||| ||||||| | |||||| || | ||| | || || || ||||| ||
Sbjct 44617 ACGTTG-TCGATCGTGTCCGAAGACTCGACCTCCAGGGTAATGGTCTTACCCGTCAGGGT 44559
Query 127096 TTTTACAAAA 127105
|| || |||
Sbjct 44558 CTTGACGAAA 44549
>seq431
Length=155802
Score = 111 bits (122), Expect = 1e-19
Identities = 159/224 (71%), Gaps = 0/224 (0%)
Strand=Plus/Plus
Query 47355 GAAGCCGTCGCCATTGAGATGGAGTTTTTCGCCGAGGCTCTGCCCGAATCTTTAGTGGGA 47414
|| ||||| | || |||| |||||| | |||||||||| ||| | | | |||
Sbjct 44252 GATGCCGTTGTGATCGAGAAGGAGTTCCTGACCGAGGCTCTTCCCTGCGGTCTGCTAGGA 44311
Query 47415 ATGAACGCGGAGATGATGAGAAAGTACATCGAATTTGTCGCCGACCGCCTGCTCGTTCAG 47474
|||||||| || |||||| ||||||| || ||||| || ||||||||||| |||
Sbjct 44312 ATGAACGCCGATCTGATGAAGCAGTACATTGAGTTTGTTGCGGACCGCCTGCTTGTTGCT 44371
Query 47475 CTAAAGTATCCCAAGATTTACCACACCGAGAATCCATTCGAGTTTATGAACAACATTTCG 47534
||| | ||| | |||| || || || ||||| || ||| | ||||| |||
Sbjct 44372 CTAGGCAACGAAAAGGTGTACCGTGCCACAAACCCCTTCGACTTCATGGAGAACATCTCG 44431
Query 47535 CTCGAGGGCAAGACCAACTTTTTCGAGAAGCGCGTCGGCGAATA 47578
|||| |||||||| ||||| || |||||||| ||||| || ||
Sbjct 44432 CTCGGCGGCAAGACTAACTTCTTTGAGAAGCGTGTCGGTGATTA 44475
>seq576
Length=37320
Score = 107 bits (118), Expect = 2e-18
Identities = 160/227 (70%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946
||||| || | |||| |||||||| | ||||| || || || || ||||| ||
Sbjct 12707 CCACCACGCAGACGCAGAACCAAATGAAGAGTAGATTCCTTCTGGATGTTGTAGTCAGAG 12648
Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006
| ||||| || || ||||| |||||||| |||| | ||||||||||| |||||
Sbjct 12647 AGGGTGCGGCCGTCCTCAAGCTGCTTTCCAGCAAAGATGAGACGCTGCTGATCCGGAGGG 12588
Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACT 127066
|| |||||||| ||| ||| || ||||| | || | || |||| | ||||||
Sbjct 12587 ATACCCTCCTTATCCTGGATCTTGGACTTGACATTGTCAATAGTATCCGAAGACTCGACC 12528
Query 127067 TCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113
|||| || | || ||||| ||||| || || ||||| || |||||
Sbjct 12527 TCGAGTGTAATAGTCTTGCCCGTCAGGGTCTTGACAAAGATTTGCAT 12481
Score = 107 bits (118), Expect = 2e-18
Identities = 160/227 (70%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946
||||| || | |||| |||||||| | || || || || || || ||||| ||
Sbjct 12935 CCACCACGCAGACGCAGAACCAAATGAAGAGTGGATTCCTTCTGGATGTTGTAGTCAGAG 12876
Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006
| |||||| ||| || || || |||||||| |||| | |||||||| || |||||
Sbjct 12875 AGGGTGCGACCATCCTCGAGTTGCTTTCCAGCAAAGATGAGACGCTGCTGGTCAGGAGGG 12816
Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACT 127066
|| |||||||||||| ||| || ||||| | || | || |||| | ||||||
Sbjct 12815 ATACCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCAATAGTATCCGAAGACTCGACC 12756
Query 127067 TCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113
|||| || | || ||||| ||||| || || ||||| || |||||
Sbjct 12755 TCGAGTGTAATAGTCTTGCCCGTCAGGGTCTTGACAAAGATTTGCAT 12709
Score = 104 bits (114), Expect = 2e-17
Identities = 153/217 (71%), Gaps = 0/217 (0%)
Strand=Plus/Minus
Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946
||||| || | |||| ||||| || | ||||| || || || || ||||| ||| |
Sbjct 12479 CCACCACGCAGACGCAGAACCAAGTGAAGAGTAGATTCCTTCTGGATGTTGTAGTCGGAC 12420
Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006
| ||||| || || ||||| ||||| || | || | ||||||||||| |||||
Sbjct 12419 AGGGTGCGGCCGTCCTCAAGCTGCTTTCCGGCAAAAATGAGACGCTGCTGATCCGGAGGG 12360
Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACT 127066
|| |||||||| ||| ||| || ||||| | |||| ||| || | |||||||
Sbjct 12359 ATACCCTCCTTATCCTGGATCTTGGACTTGACATTGTCGATGGTATCAGAGGACTCGACT 12300
Query 127067 TCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAA 127103
|||| ||| | || |||||||| || || || ||||
Sbjct 12299 TCGAGGGTGATGGTCTTGCCGGTAAGGGTCTTGACAA 12263
Score = 98.7 bits (108), Expect = 9e-16
Identities = 147/206 (71%), Gaps = 2/206 (1%)
Strand=Plus/Minus
Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946
||||| || | || | ||| | ||| | |||||||| || || || ||||| ||| |
Sbjct 12195 CCACCACGCAGGCGGAGCACTAGATGGAGAGTAGACTCCTTCTGGATGTTGTAGTCGGAC 12136
Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006
| ||||| ||| || ||||| ||||| ||| | || | |||||||| || |||||
Sbjct 12135 AGGGTGCGGCCATCCTCAAGCTGCTTTCCGGCGAAAATGAGACGCTGCTGGTCCGGAGGA 12076
Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGA-GTTGTTCGACGGTGTCCGTACTCTCGAC 127065
|| |||||||||||| ||| || ||| | |||| || | || |||| | ||| ||
Sbjct 12075 ATACCCTCCTTGTCCTGGATCTTAGACTTAACGTTG-TCAATAGTATCCGAAGACTCCAC 12017
Query 127066 TTCGACGGTCACCGTTTTGCCGGTCA 127091
|||| ||| | || ||||||||||
Sbjct 12016 CTCGAGGGTGATGGTCTTGCCGGTCA 11991
>seq1207
Length=77990
Score = 105 bits (116), Expect = 6e-18
Identities = 136/188 (72%), Gaps = 0/188 (0%)
Strand=Plus/Minus
Query 126926 TTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATC 126985
|| ||||| ||||| || || ||||| ||| || ||||| || |||||| |||||
Sbjct 69257 TTCTGAATGTTGTAGTCAGACAGGGTGCGGCCATCCTCCAGCTGCTTGCCAGCGAAGATC 69198
Query 126986 AATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCG 127045
| |||||||| || || || ||||||||||||||| || || ||||| | |||
Sbjct 69197 AGGCGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCCTGAATCTTAGACTTGACATTGTCG 69138
Query 127046 ACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAA 127105
| ||||||| ||| || |||| ||| | ||| || || || || || || || |||
Sbjct 69137 ATAGTGTCCGAGGACTCAACCTCGAGGGTAATCGTCTTACCCGTAAGGGTCTTGACGAAA 69078
Query 127106 ATCTGCAT 127113
||||||||
Sbjct 69077 ATCTGCAT 69070
>seq539
Length=40911
Score = 93.3 bits (102), Expect = 4e-14
Identities = 117/161 (73%), Gaps = 0/161 (0%)
Strand=Plus/Plus
Query 146063 GGTTGACCACCTGAAACTCGCCGGCGAGAACGCGCCTCAGATACACGTTGCTGGTGAACG 146122
||||||||||||| |||||||| || |||||||| | | | || | |||| ||| | |
Sbjct 16501 GGTTGACCACCTGGAACTCGCCAGCAAGAACGCGGCGCTGGTAGATGTTGGATGTGTAGG 16560
Query 146123 GCTCGAACGACTCGTTGTTACCGAGTATCTGCGCCGTCGTAGCGGTAGGCATGTACGCCA 146182
| ||||| |||| ||||| || || ||||||| || | || ||||||||| || |
Sbjct 16561 GTTCGAAGCACTCATTGTTGCCCAGAATCTGCGATGTGCTGGCTGTAGGCATGGGTGCAA 16620
Query 146183 CCAGCAAAGAGTTTCTCACGCCGTGTCTTTGAATCTTTTCC 146223
|||| | ||| || | || || || || |||||| |||
Sbjct 16621 CCAGAAGAGAATTGCGTACACCATGCTGTTTAATCTTCTCC 16661
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 475492449017200
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |