Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceratocystis_20albifundus_20[genbank_20GCA_5F000813685.1_202015-01- 02] 1,405 sequences; 26,875,327 total letters Query= NC_011616.1 Length=148634 Score E Sequences producing significant alignments: (Bits) Value seq492 111 1e-19 seq431 111 1e-19 seq576 107 2e-18 seq1207 105 6e-18 seq539 93.3 4e-14 >seq492 Length=47418 Score = 111 bits (122), Expect = 1e-19 Identities = 140/190 (74%), Gaps = 2/190 (1%) Strand=Plus/Minus Query 126917 GTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCA 126976 || ||||| || || || ||||| ||| || ||||| ||| || ||||| || ||| Sbjct 44737 GTGGACTCCTTCTGGATGTTGTAGTCGGACAGAGTGCGGCCATCCTCAAGCTGCTTGCCA 44678 Query 126977 GCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTG 127036 || ||||||| |||||||| || || || ||||||||||||||| ||| || |||| Sbjct 44677 GCAAAGATCAAGCGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCCTGGATCTTGGACTTG 44618 Query 127037 A-GTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGT 127095 | |||| |||| ||||||| | |||||| || | ||| | || || || ||||| || Sbjct 44617 ACGTTG-TCGATCGTGTCCGAAGACTCGACCTCCAGGGTAATGGTCTTACCCGTCAGGGT 44559 Query 127096 TTTTACAAAA 127105 || || ||| Sbjct 44558 CTTGACGAAA 44549 >seq431 Length=155802 Score = 111 bits (122), Expect = 1e-19 Identities = 159/224 (71%), Gaps = 0/224 (0%) Strand=Plus/Plus Query 47355 GAAGCCGTCGCCATTGAGATGGAGTTTTTCGCCGAGGCTCTGCCCGAATCTTTAGTGGGA 47414 || ||||| | || |||| |||||| | |||||||||| ||| | | | ||| Sbjct 44252 GATGCCGTTGTGATCGAGAAGGAGTTCCTGACCGAGGCTCTTCCCTGCGGTCTGCTAGGA 44311 Query 47415 ATGAACGCGGAGATGATGAGAAAGTACATCGAATTTGTCGCCGACCGCCTGCTCGTTCAG 47474 |||||||| || |||||| ||||||| || ||||| || ||||||||||| ||| Sbjct 44312 ATGAACGCCGATCTGATGAAGCAGTACATTGAGTTTGTTGCGGACCGCCTGCTTGTTGCT 44371 Query 47475 CTAAAGTATCCCAAGATTTACCACACCGAGAATCCATTCGAGTTTATGAACAACATTTCG 47534 ||| | ||| | |||| || || || ||||| || ||| | ||||| ||| Sbjct 44372 CTAGGCAACGAAAAGGTGTACCGTGCCACAAACCCCTTCGACTTCATGGAGAACATCTCG 44431 Query 47535 CTCGAGGGCAAGACCAACTTTTTCGAGAAGCGCGTCGGCGAATA 47578 |||| |||||||| ||||| || |||||||| ||||| || || Sbjct 44432 CTCGGCGGCAAGACTAACTTCTTTGAGAAGCGTGTCGGTGATTA 44475 >seq576 Length=37320 Score = 107 bits (118), Expect = 2e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 ||||| || | |||| |||||||| | ||||| || || || || ||||| || Sbjct 12707 CCACCACGCAGACGCAGAACCAAATGAAGAGTAGATTCCTTCTGGATGTTGTAGTCAGAG 12648 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | ||||| || || ||||| |||||||| |||| | ||||||||||| ||||| Sbjct 12647 AGGGTGCGGCCGTCCTCAAGCTGCTTTCCAGCAAAGATGAGACGCTGCTGATCCGGAGGG 12588 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACT 127066 || |||||||| ||| ||| || ||||| | || | || |||| | |||||| Sbjct 12587 ATACCCTCCTTATCCTGGATCTTGGACTTGACATTGTCAATAGTATCCGAAGACTCGACC 12528 Query 127067 TCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 |||| || | || ||||| ||||| || || ||||| || ||||| Sbjct 12527 TCGAGTGTAATAGTCTTGCCCGTCAGGGTCTTGACAAAGATTTGCAT 12481 Score = 107 bits (118), Expect = 2e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 ||||| || | |||| |||||||| | || || || || || || ||||| || Sbjct 12935 CCACCACGCAGACGCAGAACCAAATGAAGAGTGGATTCCTTCTGGATGTTGTAGTCAGAG 12876 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | |||||| ||| || || || |||||||| |||| | |||||||| || ||||| Sbjct 12875 AGGGTGCGACCATCCTCGAGTTGCTTTCCAGCAAAGATGAGACGCTGCTGGTCAGGAGGG 12816 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACT 127066 || |||||||||||| ||| || ||||| | || | || |||| | |||||| Sbjct 12815 ATACCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCAATAGTATCCGAAGACTCGACC 12756 Query 127067 TCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 |||| || | || ||||| ||||| || || ||||| || ||||| Sbjct 12755 TCGAGTGTAATAGTCTTGCCCGTCAGGGTCTTGACAAAGATTTGCAT 12709 Score = 104 bits (114), Expect = 2e-17 Identities = 153/217 (71%), Gaps = 0/217 (0%) Strand=Plus/Minus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 ||||| || | |||| ||||| || | ||||| || || || || ||||| ||| | Sbjct 12479 CCACCACGCAGACGCAGAACCAAGTGAAGAGTAGATTCCTTCTGGATGTTGTAGTCGGAC 12420 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | ||||| || || ||||| ||||| || | || | ||||||||||| ||||| Sbjct 12419 AGGGTGCGGCCGTCCTCAAGCTGCTTTCCGGCAAAAATGAGACGCTGCTGATCCGGAGGG 12360 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACT 127066 || |||||||| ||| ||| || ||||| | |||| ||| || | ||||||| Sbjct 12359 ATACCCTCCTTATCCTGGATCTTGGACTTGACATTGTCGATGGTATCAGAGGACTCGACT 12300 Query 127067 TCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAA 127103 |||| ||| | || |||||||| || || || |||| Sbjct 12299 TCGAGGGTGATGGTCTTGCCGGTAAGGGTCTTGACAA 12263 Score = 98.7 bits (108), Expect = 9e-16 Identities = 147/206 (71%), Gaps = 2/206 (1%) Strand=Plus/Minus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 ||||| || | || | ||| | ||| | |||||||| || || || ||||| ||| | Sbjct 12195 CCACCACGCAGGCGGAGCACTAGATGGAGAGTAGACTCCTTCTGGATGTTGTAGTCGGAC 12136 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | ||||| ||| || ||||| ||||| ||| | || | |||||||| || ||||| Sbjct 12135 AGGGTGCGGCCATCCTCAAGCTGCTTTCCGGCGAAAATGAGACGCTGCTGGTCCGGAGGA 12076 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGA-GTTGTTCGACGGTGTCCGTACTCTCGAC 127065 || |||||||||||| ||| || ||| | |||| || | || |||| | ||| || Sbjct 12075 ATACCCTCCTTGTCCTGGATCTTAGACTTAACGTTG-TCAATAGTATCCGAAGACTCCAC 12017 Query 127066 TTCGACGGTCACCGTTTTGCCGGTCA 127091 |||| ||| | || |||||||||| Sbjct 12016 CTCGAGGGTGATGGTCTTGCCGGTCA 11991 >seq1207 Length=77990 Score = 105 bits (116), Expect = 6e-18 Identities = 136/188 (72%), Gaps = 0/188 (0%) Strand=Plus/Minus Query 126926 TTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATC 126985 || ||||| ||||| || || ||||| ||| || ||||| || |||||| ||||| Sbjct 69257 TTCTGAATGTTGTAGTCAGACAGGGTGCGGCCATCCTCCAGCTGCTTGCCAGCGAAGATC 69198 Query 126986 AATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCG 127045 | |||||||| || || || ||||||||||||||| || || ||||| | ||| Sbjct 69197 AGGCGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCCTGAATCTTAGACTTGACATTGTCG 69138 Query 127046 ACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAA 127105 | ||||||| ||| || |||| ||| | ||| || || || || || || || ||| Sbjct 69137 ATAGTGTCCGAGGACTCAACCTCGAGGGTAATCGTCTTACCCGTAAGGGTCTTGACGAAA 69078 Query 127106 ATCTGCAT 127113 |||||||| Sbjct 69077 ATCTGCAT 69070 >seq539 Length=40911 Score = 93.3 bits (102), Expect = 4e-14 Identities = 117/161 (73%), Gaps = 0/161 (0%) Strand=Plus/Plus Query 146063 GGTTGACCACCTGAAACTCGCCGGCGAGAACGCGCCTCAGATACACGTTGCTGGTGAACG 146122 ||||||||||||| |||||||| || |||||||| | | | || | |||| ||| | | Sbjct 16501 GGTTGACCACCTGGAACTCGCCAGCAAGAACGCGGCGCTGGTAGATGTTGGATGTGTAGG 16560 Query 146123 GCTCGAACGACTCGTTGTTACCGAGTATCTGCGCCGTCGTAGCGGTAGGCATGTACGCCA 146182 | ||||| |||| ||||| || || ||||||| || | || ||||||||| || | Sbjct 16561 GTTCGAAGCACTCATTGTTGCCCAGAATCTGCGATGTGCTGGCTGTAGGCATGGGTGCAA 16620 Query 146183 CCAGCAAAGAGTTTCTCACGCCGTGTCTTTGAATCTTTTCC 146223 |||| | ||| || | || || || || |||||| ||| Sbjct 16621 CCAGAAGAGAATTGCGTACACCATGCTGTTTAATCTTCTCC 16661 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 475492449017200