Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceratocystis_20albifundus_20[genbank_20GCA_5F000813685.1_202015-01- 02] 1,405 sequences; 26,875,327 total letters Query= NC_013288.1 Length=191761 Score E Sequences producing significant alignments: (Bits) Value seq539 138 1e-27 seq431 123 3e-23 >seq539 Length=40911 Score = 138 bits (152), Expect = 1e-27 Identities = 915/1455 (63%), Gaps = 27/1455 (2%) Strand=Plus/Plus Query 115876 AACTCACCCGCGAGGGTGCGTCTCAGATAGATGTTGGTCGTGTATGGCTCAAAGCACTCA 115935 ||||| || || || ||| | | | |||||||||| ||||| || || ||||||||| Sbjct 16515 AACTCGCCAGCAAGAACGCGGCGCTGGTAGATGTTGGATGTGTAGGGTTCGAAGCACTCA 16574 Query 115936 TTGTTACCCAAGATTTGGGCTGTGGAGGCTGTGGGCATGGGTGCCATGAGAAGGCTGTTG 115995 ||||| |||| || || | |||| |||||| ||||||||||| | ||||| ||| Sbjct 16575 TTGTTGCCCAGAATCTGCGATGTGCTGGCTGTAGGCATGGGTGCAACCAGAAGAGAATTG 16634 Query 115996 CGGAGACCCACCCCCCTAATGCGTTCCTTGAGGGCGTCCCAGTCGTA--GTTGAGCTTTG 116053 || | ||| | |||| ||||| || | |||||| | | | | || | Sbjct 16635 CGTACACCATGCTGTTTAATCTTCTCCTTCAGAGAAGTCCAGTCCCACAGGTCA-CTAGG 16693 Query 116054 TCTCCCCCTCCCACATATCAAACTGGAGGATACCTTGGGACGCTGGCGATCCCTCAAATG 116113 || | ||||||||||||||||| | |||||||||||| | || || |||||| | | Sbjct 16694 AGTCACA-TCCCACATATCAAACTGCAAGATACCTTGGGAGACAGGGGAACCCTCATAGG 16752 Query 116114 TCTCATATGGGCCCTCAACCTCCGCCAATTCGGAGCTCGCCTCGAGGGCTGCGTGATACA 116173 | || | ||||| || || | ||| || || || ||||| || | Sbjct 16753 TTGAGTAAGTACCCTCCGTCTGGGCGATTTCCATTGAAGCAGTTAGTGCGGCGTGGTAGA 16812 Query 116174 TTGTCTCAAAAATGCGAGCATTCAT-TGCCTTGGCCTCGTCGGAATCAAACGCGAGACGG 116232 | || |||||||| | || | || | || | ||| ||| || || | | ||| Sbjct 16813 TGGTTTCAAAAATCTGTTTGTTAAGCTGGCGTG-CTTCGGGGGATTCGAAAGGCATGCGG 16871 Query 116233 CACAAAATAAATACATCCGCGAGACCTTGGACACCGAGGCCAATTGGGCGATGTCTCATA 116292 || || |||| || | || || ||||| | ||||| || || || | ||| Sbjct 16872 AGAGCAAGGAAAGCATCAGCCAAGCCCTGTACACCAACACCAATGGGACGGTGGCGCATG 16931 Query 116293 TTAGACTTTCGAGCGGTCTCCACGGGATAAAAATTCCTATCGATAACCCTATTTAGATTT 116352 || || |||| || || || || |||| ||| || | | ||||| || Sbjct 16932 TTGCTGTTGTGAGCTTCCTGGACAGGGTAGTGATTCACATCAATGATGCGGTTTAGGTTG 16991 Query 116353 TTGGTGACAACCTTTGTGATTTCATGAAGCTTTTCGTAATCAAAACTGCGAGTCTCTTCA 116412 ||||| | |||| ||| || ||||||| | ||| | | | | | Sbjct 16992 CGAACAACAACTTGAGTGACTTCGTGTAGCTTTTTAAAGTCATACTCACCCTTGTTGTAG 17051 Query 116413 TTGACATACTTAGGAAGGGCGATTGACGCCAGATTACACACAGAGGTCTCATCCTTATCA 116472 | || | ||||||||| | || || || || ||||||| ||| || || Sbjct 17052 TCCACGAAGGAAGGAAGGGCCAGAGATGCTAGGTTGCACACAGCAACCTCGTCAGGGGCA 17111 Query 116473 GTGTACTCTATAATTTCCGTACACAAATTTGAACTCTTAATGGTGCCCAAGTTCTTTTGA 116532 ||||| ||||| || || |||| ||||| || ||||| || | || || ||| Sbjct 17112 CAATACTCGATAATCTCAGTGCACAGGTTTGAGCTGCGGATGGTACCTAGATTTTTCTGA 17171 Query 116533 TTTGACTTTGTGTTACACGCATCCTTGTAGAGCATATATGGCGTCCCCGTCTCCGTTTGG 116592 || ||| ||| || || ||||| ||||| | || | || ||||| || ||| Sbjct 17172 TTGCTCTTGCGGTTGCAATGGTCTTTGTAAAGCATGAAAGGGTTGCCAGTCTCAGTCTGG 17231 Query 116593 GACTTGAGAATAGCCTTCCATA-CATCGGCGGCTGGCACAGTGGCGTTGGCTCGCCCCTC 116651 | || ||||| || | ||| | | || | | || | ||| | | | || ||||| Sbjct 17232 GCCTCCAGAATGGCATACCACAGCTTCTGGGCCTTG-ACAACCGTGCGACCGCGACCCTC 17290 Query 116652 CTCCTCGTACTTTGTGTAGAGGGCCTCAAACTCTTCACCCACAGCC-TCTGAGAGCCCTG 116710 || |||||||||| || || |||||||||||||| || | ||| || | | || | Sbjct 17291 CTTCTCGTACTTTTCATACAGAGCCTCAAACTCTTCGCC-ATAGCAATCCGCCAAGCCGG 17349 Query 116711 GTGCCTT-ATCTGGACAGAAGAGAGACCATTGACCACCCTCCTCAACCCGCTTCATGAAG 116769 | || || || || || | ||||| ||| | || | |||||| ||||||||||| Sbjct 17350 G-GCATTCATTGGGGCACATGAGAGTCCAGTCCTCATTTTTCTCAACACGCTTCATGAAC 17408 Query 116770 AGGTCTGGGATCCAGAGCGCCGAGAAGAGATCCCGACAGCGAGCTTCTTCATCCCCCTGA 116829 | ||| |||||| || ||| |||| || || ||| || ||||||| | || || Sbjct 17409 AAGTCGCAGATCCACAGGGCCAAGAATAGGTCACGAGCACGGACTTCTTCCTTTCCGTGG 17468 Query 116830 TTGAGACGCAACTCCAAAAAGTCCATGATATCCGCGTGCCACGGTTCCAGGTACACCGCG 116889 || ||||| || | || || | || ||| || ||||| || || ||||| | || Sbjct 17469 TTCTTGCGCAAGTCGAGGAACTCGAAGACATCAGCATGCCATGGCTCGAGGTAAATGGCA 17528 Query 116890 ATTGACCC------CTTGCGACGACCAGCCTGGTTTACATACCTCGCCGTTGCGTTAAAT 116943 | | || |||| ||| |||||| ||||| | || || ||| || Sbjct 17529 AAGGCTCCAGGTCGCTTG---TTTCCACCCTGGTCAACATAACGGGCAGTGTTGTTGAAA 17585 Query 116944 ACGCGAAGCATTGGAATGATACCATCAGATTGGCCATTTGTCCCCCGAATACGAGACTTG 117003 || || ||||| |||| |||||| | || || || || || ||| ||| Sbjct 17586 ACACGTAGCATGGGAACGATACCGTTCGAAGTACCGTTAGTACCAGCAATGTAAGAGCCA 17645 Query 117004 TTGGCTCTGACATCGTGGATGTGCATACCAATACCCCCTGCCCACTTTGAGATTTGTGCG 117063 |||| | | | ||||| | | ||| ||||| || ||| ||| || || || Sbjct 17646 GTGGCACGAATACGGTGGACATTGAGACCGATACCGCCAGCCATCTTGGAAATCATGGCA 17705 Query 117064 CACTCCGTGAGACTGCCGTAGATCCCATCGATCGAGTCACCCTTATTTGCGATGAGGAAG 117123 || | |||| | |||| || || ||||| |||| | || | ||| |||||| Sbjct 17706 CAAGTCTTGAGGGTATCGTAAATGCCCTCGATGCTGTCATCTTTCATGTCGACTAGGAAG 17765 Query 117124 CAGCTCGACATTTGTGGCCTTGGTGTACCAGCGTTGAAGAGGGTTGGTGTCGCGTGGATG 117183 || |||| || | | || |||||||| || ||||| || |||| ||||| || Sbjct 17766 CACGAAGACAACTGAGCCTGGGGGGTACCAGCATTAAAGAGCGTAGGTGATGCGTGAGTG 17825 Query 117184 AACATACCTTG--GGACATCTTATCGTAGGTCTCCAAGACA-GAGGGAATGTCTTCCCCG 117240 | | | |||| |||||| | |||||| || | ||| | || | | || || Sbjct 17826 A--AGAACTTGCTGGACATAAAGTTGTAGGTTTCAAGCACACGTTCGACT-TTGTCACCC 17882 Query 117241 TGAATACCGATTGAGACCCGCATAAACATGTATTGGGGTGTTTCCATCAGGATACCATCG 117300 |||||| | | || ||||| | ||||| ||||| ||| | | |||||||| Sbjct 17883 CAAATACCCACAGCAACACGCATTATCATGTGCTGGGGACGTTCAACAATCTTACCATCG 17942 Query 117301 AGCCTCTGGAGGTAA 117315 || || | |||||| Sbjct 17943 AGTTTCAGTAGGTAA 17957 >seq431 Length=155802 Score = 123 bits (136), Expect = 3e-23 Identities = 345/523 (66%), Gaps = 11/523 (2%) Strand=Plus/Minus Query 127519 AGCAAACTCTTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACC 127578 |||||| || ||| || ||||||||||| || ||||| || || |||||| |||||| Sbjct 44188 AGCAAAGTCGGTGTGCAGGCCCTCGTCACGAGAAATGAGCTCGTTTGAGAAGGTCAGACC 44129 Query 127579 TGGCATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGAT 127638 ||||||||||| ||||| || |||||| || | || | || ||||| ||||| Sbjct 44128 AGGCATGAGACCACGCTTGCGCAGCCAGAAGATGGAGGCGAAGGCACCCGAGAAAAAGAT 44069 Query 127639 CCCCTCCACACACGCGAACGCAAATAGACGCTCGGCAAAGGAGCGGGACT--TTGT-ATC 127695 ||||| ||| || || |||| ||| |||| |||||| | |||| |||| Sbjct 44068 GCCCTCGACAGCAGCAAAGGCAACTAGGCGCTGGGCAAACG---TAGACTCCTTGTCGGT 44012 Query 127696 AAACCACTTCATCGCCCACTGTGCCTTTTTCTCGATACATGGGACGGTCTGGATCGCTTC 127755 | |||||||| ||||| | ||||| ||| || || | || | || || | Sbjct 44011 GATCCACTTCAGAGCCCAGTCGGCCTTGCGACGGATGCAGGGAATAGTGTCAATGGCATT 43952 Query 127756 AAAGAGTTCCTTCTTTTCTGATGGATCTTTGATGTACTTATCTATGAGTTTTGAATATGT 127815 || || | | | || || || |||||||| | || || || ||||| || Sbjct 43951 GAATAGGTATGTGCGCTGCGAGGGCTCCTTGATGTAGGTGTCAATTAGCAGCGAATAGGT 43892 Query 127816 TTCGCCGTGGACCATTT-CATTATGGCACTGATACGCGTAGAAAGAGCGCGCTTCGCTTA 127874 ||| |||| ||| ||| || | ||| | ||||||| | || || ||| | Sbjct 43891 TTCAGAATGGATGTTTTCCATCAT-GATCTGGAAACCGTAGAAGCACCGGGCCTCGGGAA 43833 Query 127875 TCTGTACCTCATCGGCAAAATTGTTATTGATATTCTCAAAAACAATTCCATCGGACCCAG 127934 |||| ||||| | | || | | || || || || || ||||| || ||| Sbjct 43832 TCTGCACCTCGCCTGAGAAGCGCTCAACGAGGTTTTCGTTGACGATGCCATCAGAGGCAG 43773 Query 127935 CAAAAAACGCCAGGATATACTTTATGAATTTCTGTTCATTCTCGTTCA---GGGTCTTCC 127991 |||| || || || || | ||||| | ||| || | || ||||| || | |||| Sbjct 43772 CAAAGAAGGCGAGAATGTGGGAGATGAAGTACTGCTCGTCCTTGTTCAGACGGTTGTTCC 43713 Query 127992 AGTCGTCGAGATCCTTTGAGAGATCTACCTCCTCCGCAGTCCA 128034 |||||| ||||||||| |||||||| | ||| || |||||||| Sbjct 43712 AGTCGTGGAGATCCTTGGAGAGATCAATCTCTTCAGCAGTCCA 43670 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 613496425279800