Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceratocystis_20albifundus_20[genbank_20GCA_5F000813685.1_202015-01- 02] 1,405 sequences; 26,875,327 total letters Query= NC_013668.3 Length=248526 Score E Sequences producing significant alignments: (Bits) Value seq539 132 8e-26 >seq539 Length=40911 Score = 132 bits (146), Expect = 8e-26 Identities = 379/575 (66%), Gaps = 6/575 (1%) Strand=Plus/Plus Query 203843 TCCACCGTGAACTGAATGGCGTTCA-CGGCAGGCCTGCTT-CTCAGATAGTACATGCCGG 203900 || || ||||| || || | || || | |||| ||||| | | ||| ||||||||||| | Sbjct 16158 TCTACAGTGAATTGGATAG-GTGCAGCAGCAG-CCTGCGTACGCAGGTAGTACATGCCCG 16215 Query 203901 TCTTTAGGCCCTTCTGCCACCCGTACATGTGCATGGAAGACAGTTTGCTCACGTTGGGGT 203960 |||| || || | ||| ||| | ||||||| | | |||| || | |||| | Sbjct 16216 TCTTGAGACCTAGTTTCCAGCCGGCAAAGTGCATGCTGGTGATCTTGCCCATGGTGGGAT 16275 Query 203961 CGGCCATGTGAATGTTCAGAGACTGGCTTTGGTCGATGAAAGGCGCCCGATCTGCGGCCA 204020 | |||||||||||| |||||||| |||||| ||||||| | || || || |||| Sbjct 16276 CTTTCATGTGAATGTTTAGAGACTGCGATTGGTCAATGAAAGCACCACGGTCAGCAGCCA 16335 Query 204021 TATTGATAATGGTCTTCTGCGAAATCTCCCACACCGTCTTGAACACGTCTCTGGTGTGTT 204080 | | | || || ||| ||||| ||||| || |||||| ||| || | | | Sbjct 16336 TTTGCACAACTGTACGCTGGGAAATTTCCCAAACGGTCTTGTACAGAGCTTTAATATCAG 16395 Query 204081 GAGGCACATCTTCCCACGTCCTG-ATCGAGCCGTTGTCGGCCATCAGTCTCATCCTCGTC 204139 ||| | || | || ||| || || || ||||| || || | | || || | Sbjct 16396 CAGG-AATGCTAGGGATGTTCTGAATAGATCCATTGTCCGCAATAATGCGGTTCTTCATA 16454 Query 204140 TCCTCCCCCCACATGCCCAACCTGATCAGCTCCCGCACCAGGTGGGGGTTGATGATCTGA 204199 | || ||| | || | || || || || | || |||||||| | ||| Sbjct 16455 TTGTCAGACCATAAACCAAGATCGACAAGGTCACGTAGGAGCCAGGGGTTGACCACCTGG 16514 Query 204200 AAGTCTCCGGACAGCACCCCTCGGGTGAACAGGTTGTTGGTGAATGGTTCGAACGCCTCG 204259 || || || | || || | || | | | |||| ||| | |||||||| ||| Sbjct 16515 AACTCGCCAGCAAGAACGCGGCGCTGGTAGATGTTGGATGTGTAGGGTTCGAAGCACTCA 16574 Query 204260 TTGTTGCCGAAAATCTGAGCGGTGCTGGCCGTGGGCATGGGAGCCAGGAGCAGGGAGTTG 204319 |||||||| | |||||| | |||||||| || |||||||| || | || || || ||| Sbjct 16575 TTGTTGCCCAGAATCTGCGATGTGCTGGCTGTAGGCATGGGTGCAACCAGAAGAGAATTG 16634 Query 204320 CGCACACCGTATTTTTGGACCCTGCGCTTCAGAGAGGTCCAGTCGTGCATCGCACTGGGT 204379 || ||||| | | || | | | ||||||||| |||||||| || |||| || Sbjct 16635 CGTACACCATGCTGTTTAATCTTCTCCTTCAGAGAAGTCCAGTCCCACAGGTCACTAGGA 16694 Query 204380 TTCACGCCCCACATGTCGAACTGAAAGATGCCTTG 204414 |||| ||||||| || ||||| ||||| ||||| Sbjct 16695 GTCACATCCCACATATCAAACTGCAAGATACCTTG 16729 Score = 91.5 bits (100), Expect = 2e-13 Identities = 222/334 (66%), Gaps = 2/334 (1%) Strand=Plus/Plus Query 205060 CTCGTATTTTGTGTACAGCGCCACAAAGTCAGAACCGTACACGTCCATCAGCCCTGGACA 205119 |||||| ||| ||||| ||| |||| || || || ||| || || || || Sbjct 17294 CTCGTACTTTTCATACAGAGCCTCAAACTCTTCGCCATAGCAATCCGCCAAGCCGGGGCA 17353 Query 205120 TTTTTTGGGACACATCAGAGACCACATCTGATCGTCTTTCACCCTCTCCATAAACAGGTC 205179 || ||||| ||||| |||| ||| || || | | || | || ||| |||| ||| Sbjct 17354 TTCATTGGGGCACATGAGAGTCCAGTCCTCATTTTTCTCAACACGCTTCATGAACAAGTC 17413 Query 205180 GCTGATCCACAGGCCGTAAAACAGATCACGGGCCCTAATTCCGTCGTCTCCAAGGTTCTT 205239 || |||||||||| | | || || ||||| || | | | | || | ||| ||||||| Sbjct 17414 GCAGATCCACAGGGCCAAGAATAGGTCACGAGCACGGACTTCTTCCTTTCCGTGGTTCTT 17473 Query 205240 TTTCAAGTCCAGCCAAGCCGCA-ATGTCGGCGTGCCACGGCTCTAACCACACGGCCATTG 205298 |||||| || || || | | || || ||||| ||||| | | | ||| | | Sbjct 17474 GCGCAAGTCGAGG-AACTCGAAGACATCAGCATGCCATGGCTCGAGGTAAATGGCAAAGG 17532 Query 205299 CGCCTGGCCTCTTGTTCCCACCCTGGTCCACCATGCGAGTCATCGCGTTGAAAACTCGCA 205358 | || || | |||||| ||||||||||| || || | | ||||||||| || | Sbjct 17533 CTCCAGGTCGCTTGTTTCCACCCTGGTCAACATAACGGGCAGTGTTGTTGAAAACACGTA 17592 Query 205359 GCATCGGCACCAGACCGTTGGCGGTCCCGTTCGT 205392 |||| || || | |||||| | || ||||| || Sbjct 17593 GCATGGGAACGATACCGTTCGAAGTACCGTTAGT 17626 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 795141235086800