Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ceratocystis_20albifundus_20[genbank_20GCA_5F000813685.1_202015-01-
02] 1,405 sequences; 26,875,327 total letters
Query= NC_013668.3
Length=248526
Score E
Sequences producing significant alignments: (Bits) Value
seq539 132 8e-26
>seq539
Length=40911
Score = 132 bits (146), Expect = 8e-26
Identities = 379/575 (66%), Gaps = 6/575 (1%)
Strand=Plus/Plus
Query 203843 TCCACCGTGAACTGAATGGCGTTCA-CGGCAGGCCTGCTT-CTCAGATAGTACATGCCGG 203900
|| || ||||| || || | || || | |||| ||||| | | ||| ||||||||||| |
Sbjct 16158 TCTACAGTGAATTGGATAG-GTGCAGCAGCAG-CCTGCGTACGCAGGTAGTACATGCCCG 16215
Query 203901 TCTTTAGGCCCTTCTGCCACCCGTACATGTGCATGGAAGACAGTTTGCTCACGTTGGGGT 203960
|||| || || | ||| ||| | ||||||| | | |||| || | |||| |
Sbjct 16216 TCTTGAGACCTAGTTTCCAGCCGGCAAAGTGCATGCTGGTGATCTTGCCCATGGTGGGAT 16275
Query 203961 CGGCCATGTGAATGTTCAGAGACTGGCTTTGGTCGATGAAAGGCGCCCGATCTGCGGCCA 204020
| |||||||||||| |||||||| |||||| ||||||| | || || || ||||
Sbjct 16276 CTTTCATGTGAATGTTTAGAGACTGCGATTGGTCAATGAAAGCACCACGGTCAGCAGCCA 16335
Query 204021 TATTGATAATGGTCTTCTGCGAAATCTCCCACACCGTCTTGAACACGTCTCTGGTGTGTT 204080
| | | || || ||| ||||| ||||| || |||||| ||| || | | |
Sbjct 16336 TTTGCACAACTGTACGCTGGGAAATTTCCCAAACGGTCTTGTACAGAGCTTTAATATCAG 16395
Query 204081 GAGGCACATCTTCCCACGTCCTG-ATCGAGCCGTTGTCGGCCATCAGTCTCATCCTCGTC 204139
||| | || | || ||| || || || ||||| || || | | || || |
Sbjct 16396 CAGG-AATGCTAGGGATGTTCTGAATAGATCCATTGTCCGCAATAATGCGGTTCTTCATA 16454
Query 204140 TCCTCCCCCCACATGCCCAACCTGATCAGCTCCCGCACCAGGTGGGGGTTGATGATCTGA 204199
| || ||| | || | || || || || | || |||||||| | |||
Sbjct 16455 TTGTCAGACCATAAACCAAGATCGACAAGGTCACGTAGGAGCCAGGGGTTGACCACCTGG 16514
Query 204200 AAGTCTCCGGACAGCACCCCTCGGGTGAACAGGTTGTTGGTGAATGGTTCGAACGCCTCG 204259
|| || || | || || | || | | | |||| ||| | |||||||| |||
Sbjct 16515 AACTCGCCAGCAAGAACGCGGCGCTGGTAGATGTTGGATGTGTAGGGTTCGAAGCACTCA 16574
Query 204260 TTGTTGCCGAAAATCTGAGCGGTGCTGGCCGTGGGCATGGGAGCCAGGAGCAGGGAGTTG 204319
|||||||| | |||||| | |||||||| || |||||||| || | || || || |||
Sbjct 16575 TTGTTGCCCAGAATCTGCGATGTGCTGGCTGTAGGCATGGGTGCAACCAGAAGAGAATTG 16634
Query 204320 CGCACACCGTATTTTTGGACCCTGCGCTTCAGAGAGGTCCAGTCGTGCATCGCACTGGGT 204379
|| ||||| | | || | | | ||||||||| |||||||| || |||| ||
Sbjct 16635 CGTACACCATGCTGTTTAATCTTCTCCTTCAGAGAAGTCCAGTCCCACAGGTCACTAGGA 16694
Query 204380 TTCACGCCCCACATGTCGAACTGAAAGATGCCTTG 204414
|||| ||||||| || ||||| ||||| |||||
Sbjct 16695 GTCACATCCCACATATCAAACTGCAAGATACCTTG 16729
Score = 91.5 bits (100), Expect = 2e-13
Identities = 222/334 (66%), Gaps = 2/334 (1%)
Strand=Plus/Plus
Query 205060 CTCGTATTTTGTGTACAGCGCCACAAAGTCAGAACCGTACACGTCCATCAGCCCTGGACA 205119
|||||| ||| ||||| ||| |||| || || || ||| || || || ||
Sbjct 17294 CTCGTACTTTTCATACAGAGCCTCAAACTCTTCGCCATAGCAATCCGCCAAGCCGGGGCA 17353
Query 205120 TTTTTTGGGACACATCAGAGACCACATCTGATCGTCTTTCACCCTCTCCATAAACAGGTC 205179
|| ||||| ||||| |||| ||| || || | | || | || ||| |||| |||
Sbjct 17354 TTCATTGGGGCACATGAGAGTCCAGTCCTCATTTTTCTCAACACGCTTCATGAACAAGTC 17413
Query 205180 GCTGATCCACAGGCCGTAAAACAGATCACGGGCCCTAATTCCGTCGTCTCCAAGGTTCTT 205239
|| |||||||||| | | || || ||||| || | | | | || | ||| |||||||
Sbjct 17414 GCAGATCCACAGGGCCAAGAATAGGTCACGAGCACGGACTTCTTCCTTTCCGTGGTTCTT 17473
Query 205240 TTTCAAGTCCAGCCAAGCCGCA-ATGTCGGCGTGCCACGGCTCTAACCACACGGCCATTG 205298
|||||| || || || | | || || ||||| ||||| | | | ||| | |
Sbjct 17474 GCGCAAGTCGAGG-AACTCGAAGACATCAGCATGCCATGGCTCGAGGTAAATGGCAAAGG 17532
Query 205299 CGCCTGGCCTCTTGTTCCCACCCTGGTCCACCATGCGAGTCATCGCGTTGAAAACTCGCA 205358
| || || | |||||| ||||||||||| || || | | ||||||||| || |
Sbjct 17533 CTCCAGGTCGCTTGTTTCCACCCTGGTCAACATAACGGGCAGTGTTGTTGAAAACACGTA 17592
Query 205359 GCATCGGCACCAGACCGTTGGCGGTCCCGTTCGT 205392
|||| || || | |||||| | || ||||| ||
Sbjct 17593 GCATGGGAACGATACCGTTCGAAGTACCGTTAGT 17626
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 795141235086800
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |