Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ceratocystis_20albifundus_20[genbank_20GCA_5F000813685.1_202015-01-
02] 1,405 sequences; 26,875,327 total letters
Query= NC_013756.1
Length=368454
Score E
Sequences producing significant alignments: (Bits) Value
seq492 136 9e-27
seq576 118 2e-21
seq1207 113 1e-19
>seq492
Length=47418
Score = 136 bits (150), Expect = 9e-27
Identities = 158/213 (74%), Gaps = 0/213 (0%)
Strand=Plus/Minus
Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468
|| || | |||||||||||||||||| |||||||| |||| ||||||||| | || |||
Sbjct 44761 CGCAGGCGCAGGACAAGGTGGAGAGTGGACTCCTTCTGGATGTTGTAGTCGGACAGAGTG 44702
Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528
| ||||| || |||||||| || || ||||| | |||||||||||||| ||| ||
Sbjct 44701 CGGCCATCCTCAAGCTGCTTGCCAGCAAAGATCAAGCGCTGCTGGTCCGGGGGAATGCCC 44642
Query 199529 TCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAAC 199588
|| ||||| ||||| ||| ||| |||| ||||| | | || || ||||
Sbjct 44641 TCCTTGTCCTGGATCTTGGACTTGACGTTGTCGATCGTGTCCGAAGACTCGACCTCCAGG 44582
Query 199589 GTGATCGTCTTACCCGTGAGAGTTTTCACAAAA 199621
|| || ||||||||||| || || || || |||
Sbjct 44581 GTAATGGTCTTACCCGTCAGGGTCTTGACGAAA 44549
>seq576
Length=37320
Score = 118 bits (130), Expect = 2e-21
Identities = 103/128 (80%), Gaps = 0/128 (0%)
Strand=Plus/Minus
Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477
|| || || |||||||| |||||||| |||| ||||||||| | || || | |||||
Sbjct 12180 AGCACTAGATGGAGAGTAGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCATCC 12121
Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537
|| ||||||||||||||||| ||||||||||||||||||||| ||| || || |||
Sbjct 12120 TCAAGCTGCTTTCCGGCGAAAATGAGACGCTGCTGGTCCGGAGGAATACCCTCCTTGTCC 12061
Query 199538 TGAATCTT 199545
|| |||||
Sbjct 12060 TGGATCTT 12053
Score = 105 bits (116), Expect = 2e-17
Identities = 150/211 (71%), Gaps = 0/211 (0%)
Strand=Plus/Minus
Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468
|| || | ||| || | ||| ||||| || ||||| |||| ||||||||| | || ||
Sbjct 12473 CGCAGACGCAGAACCAAGTGAAGAGTAGATTCCTTCTGGATGTTGTAGTCGGACAGGGTG 12414
Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528
| || || || |||||||||||||| || |||||||||||||| |||||| || ||
Sbjct 12413 CGGCCGTCCTCAAGCTGCTTTCCGGCAAAAATGAGACGCTGCTGATCCGGAGGGATACCC 12354
Query 199529 TCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAAC 199588
|| ||||| ||||| ||| || |||| ||| || | | || || || |
Sbjct 12353 TCCTTATCCTGGATCTTGGACTTGACATTGTCGATGGTATCAGAGGACTCGACTTCGAGG 12294
Query 199589 GTGATCGTCTTACCCGTGAGAGTTTTCACAA 199619
||||| ||||| || || || || || ||||
Sbjct 12293 GTGATGGTCTTGCCGGTAAGGGTCTTGACAA 12263
Score = 100 bits (110), Expect = 7e-16
Identities = 153/218 (70%), Gaps = 0/218 (0%)
Strand=Plus/Minus
Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468
|| || | ||| || | || ||||| || ||||| |||| ||||||||||| | ||
Sbjct 12701 CGCAGACGCAGAACCAAATGAAGAGTAGATTCCTTCTGGATGTTGTAGTCAGAGAGGGTG 12642
Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528
| || || || ||||||||||| || ||||||||||||||||| |||||| || ||
Sbjct 12641 CGGCCGTCCTCAAGCTGCTTTCCAGCAAAGATGAGACGCTGCTGATCCGGAGGGATACCC 12582
Query 199529 TCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAAC 199588
|| ||||| ||||| ||| || || | || || | | || || || |
Sbjct 12581 TCCTTATCCTGGATCTTGGACTTGACATTGTCAATAGTATCCGAAGACTCGACCTCGAGT 12522
Query 199589 GTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626
|| || ||||| ||||| || || || ||||| |||||
Sbjct 12521 GTAATAGTCTTGCCCGTCAGGGTCTTGACAAAGATTTG 12484
Score = 100 bits (110), Expect = 7e-16
Identities = 153/218 (70%), Gaps = 0/218 (0%)
Strand=Plus/Minus
Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468
|| || | ||| || | || ||||| || ||||| |||| ||||||||||| | ||
Sbjct 12929 CGCAGACGCAGAACCAAATGAAGAGTGGATTCCTTCTGGATGTTGTAGTCAGAGAGGGTG 12870
Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528
| ||||| || || |||||||| || |||||||||||||||||||| ||| || ||
Sbjct 12869 CGACCATCCTCGAGTTGCTTTCCAGCAAAGATGAGACGCTGCTGGTCAGGAGGGATACCC 12810
Query 199529 TCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAAC 199588
|| ||||| ||||| ||| || || | || || | | || || || |
Sbjct 12809 TCCTTGTCCTGGATCTTGGACTTGACATTGTCAATAGTATCCGAAGACTCGACCTCGAGT 12750
Query 199589 GTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626
|| || ||||| ||||| || || || ||||| |||||
Sbjct 12749 GTAATAGTCTTGCCCGTCAGGGTCTTGACAAAGATTTG 12712
>seq1207
Length=77990
Score = 113 bits (124), Expect = 1e-19
Identities = 137/187 (73%), Gaps = 0/187 (0%)
Strand=Plus/Minus
Query 199440 CCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCTTCCAGCTGCTTTCCGGCGAAGA 199499
|||| || | ||||||||||| || || | ||||| ||||||||||| || |||||||
Sbjct 69259 CCTTCTGAATGTTGTAGTCAGACAGGGTGCGGCCATCCTCCAGCTGCTTGCCAGCGAAGA 69200
Query 199500 TGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCCTGAATCTTTTGCTTCACGGATT 199559
| || |||||||||||||| ||| || || ||||||||||| ||| || |
Sbjct 69199 TCAGGCGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCCTGAATCTTAGACTTGACATTGT 69140
Query 199560 CGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTCTTACCCGTGAGAGTTTTCACAA 199619
||| ||||| | | || || || | || |||||||||||||| || || || || |
Sbjct 69139 CGATAGTGTCCGAGGACTCAACCTCGAGGGTAATCGTCTTACCCGTAAGGGTCTTGACGA 69080
Query 199620 AAATTTG 199626
|||| ||
Sbjct 69079 AAATCTG 69073
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1178900377569135
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |