Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceratocystis_20albifundus_20[genbank_20GCA_5F000813685.1_202015-01- 02] 1,405 sequences; 26,875,327 total letters Query= NC_014765.1 Length=198519 Score E Sequences producing significant alignments: (Bits) Value seq819 178 2e-39 seq530 159 4e-34 >seq819 Length=99480 Score = 178 bits (196), Expect = 2e-39 Identities = 278/398 (70%), Gaps = 0/398 (0%) Strand=Plus/Minus Query 7463 TCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACCTCCTTCA 7522 || |||||||||| || || || || ||||| | ||||| || |||||||| | || Sbjct 62282 TCCTCACCACCCAGATGGGTGTCACCAGCGGTGGACTTGACCTCGAAGATACCGTCCTCG 62223 Query 7523 ATGTTTAACAACGAAACATCAAACGTACCACCACCCAGGTCAAAAATGAGTACGTTCGTA 7582 ||| | | | ||| ||||| || |||||||||||||| || || || || ||||| Sbjct 62222 ATGGTCAGAAGCGAGACATCGAAAGTACCACCACCCAGATCGAAGATCAGGACGTTGCGC 62163 Query 7583 TCGTCGTCTTTGTTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGGTTCATTAATA 7642 ||| | || ||||| || |||||||| || || || || || || || || ||||| Sbjct 62162 TCGCCCTCGACCTTCTTGTCAAGACCGTAGGCAATGGCAGCAGCAGTGGGCTCGTTAATG 62103 Query 7643 ATACGAAGACAGTTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGTCGTTGCGAA 7702 ||||| || ||| ||||||||||| | | || || || || || || || || Sbjct 62102 ATACGCAGGACGTTGAGGCCAGCAATGAGACCAGAGTCCTTGGTAGCCTGACGCTGAGAG 62043 Query 7703 TCGTTAAAGTAGGCCGGGACCGTTACGACCGCGTCCGTGACTTTCTTACCGAGATACGAT 7762 ||||| |||||||| || || || | ||| |||| |||| | | || || || || Sbjct 62042 TCGTTGAAGTAGGCGGGAACAGTGATGACAGCGTTGTTGACGTCAGTGCCCAGGTAGGAC 61983 Query 7763 TCCGCGATATCTTTCATTTTGGTAAGAACCATCGATGAAATCTCTTCAGCCGCAAACTGT 7822 || || | || ||| ||||| | |||||| || || |||||||||| | ||||| Sbjct 61982 TCGGCAGTCTCACGCATCTTGGTCAAAACCATGGAGGAGATCTCTTCAGGGGTGAACTGC 61923 Query 7823 TTCGTTTCACCGTTAAAATCAACTTCAATCATGGGTTT 7860 || || ||||| || || || || || || || || || Sbjct 61922 TTGGTCTCACCCTTGAACTCGACCTCGATGATAGGCTT 61885 >seq530 Length=41375 Score = 159 bits (176), Expect = 4e-34 Identities = 380/572 (66%), Gaps = 13/572 (2%) Strand=Plus/Minus Query 7243 CAGTTCCTCAAAACGTGCACGGGTAATGGATGTATAG--AAATCAACGCCGTCGTATAAC 7300 ||||||||| ||||| ||||| || || || | || || || | || ||| | | Sbjct 25243 CAGTTCCTCGAAACGGGCACGAGTGATC--TGGACAGTGAAGTCCTCACCATCGAAGAGA 25186 Query 7301 GAATCAATTTCAATGGTTGTTTGTGCCGTCGAAGATAACGTTCGCTTTGCGCGCTCACAC 7360 || || |||||||| || || || ||||| | || ||||| || ||||| || Sbjct 25185 CTGTCGATCTCAATGGTGGTCTGAGCACCGGAAGAAAGGGTACGCTTGGCACGCTCGCAA 25126 Query 7361 GCCGTTCGTAAACGACGAAGGGCACGCGGGTTACCGGAAATATCTTTCTTATGTTTACGT 7420 || || || | |||||| |||||||| | | | ||| | || ||||| || || Sbjct 25125 GCAGTGCGGAGACGACGCAGGGCACGAGCATCAGAGGACAGGTCCTTCTTGGTCTTGCGG 25066 Query 7421 TTAAACTCTTCAGAGAAGTGTCGAAGGAGTCTCGAATCGAAATCTTCACCACCCAAGTGT 7480 | || || | | ||| || || | | ||||| || | |||||||| ||| Sbjct 25065 GTGAAGTCCTTCTTGCAGTACTCCAGCAGGTTGGTGTCGAAGTCCTGACCACCCAGGTGA 25006 Query 7481 GTATCCCCCGCGGTCGCTTTGACTTCAAAGATACCTCCTTCAATGTTTAACAACGAAACA 7540 || || || ||||| || ||||| |||| ||| || | |||||| | || || ||| Sbjct 25005 GTGTCACCAGCGGTAGCCTTGACGGTGAAGACACCACCCTGAATGTTCAGCAGGGAGACA 24946 Query 7541 TCAAACGTACCACCACCCAGGTCAAAAATGAGTACGTTCGTATCGTCGTCTTTGTTCTTA 7600 || || |||||||| ||||| || | || || ||||| || | || | |||| Sbjct 24945 TCGAAAGTACCACCGCCCAGATCGTAGATCAGGACGTTGCGCTCCTTCTC---GGACTTA 24889 Query 7601 TC------GAGACCGTACGCGATAGCCGCCGCCGTTGGTTCATTAATAATACGAAGACAG 7654 | ||||||||| || || || || || || || || || || ||||| ||| | Sbjct 24888 CCAGCACCGAGACCGTAGGCAATGGCGGCAGCGGTAGGCTCGTTGATGATACGCAGAACG 24829 Query 7655 TTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGTCGTTGCGAATCGTTAAAGTAG 7714 ||||||||||| || | | ||||| || || || || || || ||||| |||||| Sbjct 24828 TTCAGGCCAGCGATGGCACCGGCATCCTTGGTAGCCTGACGCTGGTTGTCGTTGAAGTAG 24769 Query 7715 GCCGGGACCGTTACGACCGCGTCCGTGACTTTCTTACCGAGATACGATTCCGCGATATCT 7774 || ||||| || | ||| || | | || ||||| ||||| | | || || || || Sbjct 24768 GCAGGGACGGTGATGACAGCCTTCTCAACCTTCTTGCCGAGCTTGGCCTCAGCAATCTCC 24709 Query 7775 TTCATTTTGGTAAGAACCATCGATGAAATCTC 7806 ||||| || |||||||| || |||| ||| Sbjct 24708 TTCATCTTCAGCAGAACCATGGAAGAAACCTC 24677 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 635121645480200