Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceratocystis_20albifundus_20[genbank_20GCA_5F000813685.1_202015-01- 02] 1,405 sequences; 26,875,327 total letters Query= NC_014766.1 Length=194022 Score E Sequences producing significant alignments: (Bits) Value seq539 199 5e-46 seq431 107 2e-18 seq564 87.8 2e-12 seq1 82.4 9e-11 >seq539 Length=40911 Score = 199 bits (220), Expect = 5e-46 Identities = 1054/1656 (64%), Gaps = 53/1656 (3%) Strand=Plus/Minus Query 111705 TTCATCCACGCAACACCAACCCTCTTCAACGCTGGTACACCAAGACCCCAAATGTCCAGT 111764 |||| |||||| |||| || ||||| || |||||||| || | || |||| Sbjct 17827 TTCACTCACGCATCACCTACGCTCTTTAATGCTGGTACCCCCCAGGCTCAGTTGTCTTCG 17768 Query 111765 TGTTTCCTTATTGCAAACAAGGAGGATTCAATCAATGGCATTTACGGCACTCTCACTGAA 111824 || ||||| | | | || || || ||| | |||||||||| || |||| Sbjct 17767 TGCTTCCTAGTCGACATGAAAGATGACAGCATCGAGGGCATTTACGATACCCTCAAGACT 17708 Query 111825 TGTGCCCAAATCTCAAAGTGGGCTGGTGGTATCGGGATGCACATCCATGATGTCAGAGCC 111884 |||||| || || ||| |||||| |||||||| | | |||| | | | ||| Sbjct 17707 TGTGCCATGATTTCCAAGATGGCTGGCGGTATCGGTCTCAATGTCCACCGTATTCGTGCC 17648 Query 111885 AACAAGTCTCGTATTAGAGGTACAAATGGTCAATCAGATGGTATTATTCCAATGCTTCGC 111944 | ||| ||| ||||| || ||| || | ||||| |||| ||||| || Sbjct 17647 ACTGGCTCTTACATTGCTGGTACTAACGGTACTTCGAACGGTATCGTTCCCATGCTACGT 17588 Query 111945 GTATTTAACGCCACAGCGCGCTATGTAAACCAAGCTGGGCGTCGCAAGGGATCTA----- 111999 || || ||| ||| || || ||||| |||| | ||| |||| || || Sbjct 17587 GTTTTCAACAACACTGCCCGTTATGTTGACCAGGGTGGAAA---CAAGCGACCTGGAGCC 17531 Query 112000 -TCGCAGTCTATCTTGAGCCATGGCACGCGGATATCATGGAGTTCCTTGAGTTGCGTCTC 112058 | || | || || ||||||||||| || ||| || | |||||||| || ||||| Sbjct 17530 TTTGCCATTTACCTCGAGCCATGGCATGCTGATGTCTTCGAGTTCCTCGACTTGCGCAAG 17471 Query 112059 AACCAAGGTGATGAGGAGGCGCGGTGC-CGCGATCTCTTCTCCGCTCTCTGGATTCCAGA 112117 ||||| || | || || | || ||| || || || |||| || || ||||| || Sbjct 17470 AACCACGGAAAGGAAGAAGTCCG-TGCTCGTGACCTATTCTTGGCCCTGTGGATCTGCGA 17412 Query 112118 TCTCTTCATGAAGAGAGTTGAGGAGAGTGGCAATTGGTCTCTCTTTTGTCCAGAC-AAGG 112176 | ||||||||| | |||||| | | || | ||| ||||| | || || | || | Sbjct 17411 CTTGTTCATGAAGCGTGTTGAGAAAAATGAGGACTGGACTCTCATGTGCCCCAATGAATG 17352 Query 112177 CACCCGGTCTCTCCGATGCCGTGGGTGAGGAGTTTGAAGCCCTCTACACAAAGTACGAGG 112236 | ||||| | | ||| | || || |||||||| || || || |||||||||| Sbjct 17351 C-CCCGGCTTGGCGGATTGCTATGGCGAAGAGTTTGAGGCTCTGTATGAAAAGTACGAGA 17293 Query 112237 AAGAAAGTCGGGCGACTGCGACGGTG--CCAGCTGCCGATG-TGTGGAAAGCTATTCTCA 112293 | || |||| | | | || ||||| | || | || | ||||| | || ||||| Sbjct 17292 AGGAGGGTCGCG-GTC-GC-ACGGTTGTCAAGGCCCAGAAGCTGTGGTATGCCATTCTGG 17236 Query 112294 AGTCTCAAACCGAGACTGGTACACCATATATGCTTTACAAAGACGCCTGTAACCAAAAGA 112353 || | || || |||||||| | || | ||||||||||||||| || |||| |||| Sbjct 17235 AGGCCCAGACTGAGACTGGCAACCCTTTCATGCTTTACAAAGACCATTGCAACCGCAAGA 17176 Query 112354 GTAATCAAAAGAATTTGGGTGTGATCAAGAGTTCCAACCTCTGTACAGAAATCTTGGAAT 112413 | ||||| || ||| | ||| ||| || || ||||| || || || || | || | Sbjct 17175 GCAATCAGAAAAATCTAGGTACCATCCGCAGCTCAAACCTGTGCACTGAGATTATCGAGT 17116 Query 112414 TTACAGACAAAGATGAGACGGCTGTGTGTAACCTCGCATCAATCGCTCTCCCCAAGTATG 112473 | | | || ||| |||||||| ||||| ||||| | || || || | | Sbjct 17115 ATTGTGCCCCTGACGAGGTTGCTGTGTGCAACCTAGCATCTCTGGCCCTTCCTTCCTTCG 17056 Query 112474 TGGATCCAGAGACAAAG--ACATTTGATTATGAAAAACTCCACGAAGTTACGAAAACTGT 112531 |||| | | | |||| | | ||| | | |||| || |||||||| || || ||| Sbjct 17055 TGGA-CTACA-ACAAGGGTGAGTATGACTTTAAAAAGCTACACGAAGTCACTCAAGTTGT 16998 Query 112532 CACAAAAAACCTAAACAGAGTTATTGATAGAAATTTTTACCCCGTTGAGACTGCTCGTAA 112591 ||||||||| | | |||||| ||| ||||| || || |||| || Sbjct 16997 TGTTCGCAACCTAAACCGCATCATTGATGTGAATCACTACCCTGTCCAGGAAGCTCACAA 16938 Query 112592 ATCTAATATGAGACACCGTCCAATTGGTCTCGGTGTCCAAGGTCTCGCGGATGTATTCAT 112651 || ||| | |||||||| |||||| | ||||| || || | || |||| ||| | Sbjct 16937 CAGCAACATGCGCCACCGTCCCATTGGTGTTGGTGTACAGGGCTTGGCTGATGCTTTCCT 16878 Query 112652 TCTTTGTCGCCACGCATTT-GATTCCGACGAAGCGAAGGAAATCAATGCGCGTATATTTG 112710 | | || || || ||| || ||| |||||| | | || | || |||| Sbjct 16877 T-GCTCTCCGCATGCCTTTCGAATCCCCCGAAGCACGCCAGCTTAACAAACAGATTTTTG 16819 Query 112711 AGACAATGTATCACGCCGCTCTTGAGGCGAGTTC---GGAGTTGGCAGAGGTTGATGGTC 112767 | || || || |||||||| || || ||| ||| | || || || ||| Sbjct 16818 AAACCATCTACCACGCCGCACTAACTGC---TTCAATGGAAATCGCCCAGACGGAGGGTA 16762 Query 112768 CATATGAAACCTTTGAGGGTTCTCCAGCTTCACAAGGGGTGCTTCAATTTGATATGTGGG 112827 | || ||||| ||||||||| || | || ||||| | | || ||||||||||||| Sbjct 16761 CTTACTCAACCTATGAGGGTTCCCCTGTCTCCCAAGGTATCTTGCAGTTTGATATGTGGG 16702 Query 112828 AAGGTGAGACCAAGCTTCAC---TACGACTGGGACGCTCTCAAGGAACGCATCAAGGAGA 112884 | |||| || || | || | |||||| |||| ||||| || || || Sbjct 16701 -ATGTGACTCCTAG--TGACCTGTGGGACTGGACTTCTCTGAAGGAGAAGATTAAACAGC 16645 Query 112885 AGGGTCTTCGTAACAGTCTTTTGATGGCACCAATGCCAACAGCCTCCACCGCACAAATCT 112944 | ||| | || || |||| || | ||||| ||||| |||||| ||| | || || Sbjct 16644 ATGGTGTACGCAATTCTCTTCTGGTTGCACCCATGCCTACAGCCAGCACATCGCAGATTC 16585 Query 112945 TGGGTAATAATGAATGCTTTGAACCCTACACGACGAACATCTATCTGAGAAGAACCCTCG 113004 |||| || ||||| ||||| ||||||||||| | |||||||| | | | | || | Sbjct 16584 TGGGCAACAATGAGTGCTTCGAACCCTACACATCCAACATCTACCAGCGCCGCGTTCTTG 16525 Query 113005 CGGGAGAGTTTGTGATTGTCAACAAGCATCTCGTGGATGACCTCAAAGAGATTGGTCTCT 113064 | || ||||| | | |||||| ||| | |||||| || ||||| | | Sbjct 16524 CTGGCGAGTTCCAGGTGGTCAACCCCTGGCTCCTACGTGACCTTGTCGATCTTGGTTTAT 16465 Query 113065 GGTCCAAGGATATGAAGGATCTCATGGTGAAAGCGG---GTGGTTCCATTCAAAATATTG 113121 |||| | |||||||| | | || | | |||| ||| || ||||| || || Sbjct 16464 GGTCTGACAATATGAAGAACCGCA---TTATTGCGGACAATGGATCTATTCAGAACATCC 16408 Query 113122 TGGATATTCCAGATGAAATTAAGAAGTTGTACCGCACAGTTTGGGAAAT---CAAGATGA 113178 ||||| | ||| ||||| ||||| || ||||||||||| | || | Sbjct 16407 CTAGCATTCCTGCTGATATTAAAGCTCTGTACAAGACCGTTTGGGAAATTTCCCAGCGTA 16348 Query 113179 AGGATGTCATTGACATGGCCGCAGATCGTGGTCGCTTCATTGATCAAAGTCAAAGTATGA 113238 | || | | ||||| || || |||||| |||||||| ||| || ||| | Sbjct 16347 CAGTTG---TGCAAATGGCTGCTGACCGTGGTGCTTTCATTGACCAA--TCGCAGTCTCT 16293 Query 113239 ATCTATT--CATGGAAAGTCCAACGATGTCCAAGCTCTCTTCTATGCACATGTACAGTTG 113296 | ||| |||| || ||| || ||| |||| || | |||||| | | | || Sbjct 16292 AAACATTCACATGAAAGATCCCACCATGGGCAAGATCACCAGCATGCACTTTGCCGGCTG 16233 Query 113297 GAAGAAGGGTCTCAAAACGGGGATGTATTACCTCCG 113332 ||| |||||||| ||||| ||||| ||||| || Sbjct 16232 GAAACTAGGTCTCAAGACGGGCATGTACTACCTGCG 16197 >seq431 Length=155802 Score = 107 bits (118), Expect = 2e-18 Identities = 149/206 (72%), Gaps = 6/206 (3%) Strand=Plus/Plus Query 102129 AAAGCGGATTGGGCTATGAAGTGGTTTGAT-ACAA--AGTCGCGTTCCTTTGCTGAGCGA 102185 || || || |||||| |||||||| | |||| |||| | | ||||| |||| Sbjct 43985 AAGGCCGACTGGGCTCTGAAGTGGATCACCGACAAGGAGTC---TACGTTTGCCCAGCGC 44041 Query 102186 CTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCCTTCTGCGCTATTTAT 102245 || | || ||||| ||| ||||| ||||| ||||| ||| ||||| | | || | Sbjct 44042 CTAGTTGCCTTTGCTGCTGTCGAGGGCATCTTTTTCTCGGGTGCCTTCGCCTCCATCTTC 44101 Query 102246 TGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAACGAGCTTATCTCTCGT 102305 ||||| ||||| ||||||||||| ||||| |||||| |||||||| || |||||| Sbjct 44102 TGGCTGCGCAAGCGTGGTCTCATGCCTGGTCTGACCTTCTCAAACGAGCTCATTTCTCGT 44161 Query 102306 GACGAGGGACTCCACCAAGAGTTTGC 102331 |||||||| || ||| || ||||| Sbjct 44162 GACGAGGGCCTGCACACCGACTTTGC 44187 >seq564 Length=132701 Score = 87.8 bits (96), Expect = 2e-12 Identities = 213/319 (67%), Gaps = 8/319 (3%) Strand=Plus/Minus Query 16065 GCATCAATCTCATCAATGAAGACGATGCATGGTTGATTTTCGCGAGCGACTTCAAAGAGA 16124 ||||||||||| ||||| |||| ||||||||| || | ||| || |||| ||| Sbjct 130105 GCATCAATCTCGTCAATAAAGATGATGCATGGCGCGTTCTTGCGCGCCGTAGCAAAAAGA 130046 Query 16125 TCCCGTACACGCTTGGCGCCCACACCAACAAACATCTCCACAAAGTTTGCGGCG-GAACA 16183 || || || ||| | |||||| || ||||||||||| ||||| | | | || ||| Sbjct 130045 TCACGCACTCGCGACGGGCCCACGCCGACAAACATCTCGACAAACTCGGAGCCGCTGACA 129986 Query 16184 TTGGATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAGTCTTACCCGT 16243 | || |||||| || || || || || |||| || || || ||||| ||||| Sbjct 129985 CT-GAAGAAGGGAACGCCTGACTCGCCAGCCGTGGCCTTTGCTAGCAGCGTCTTGCCCGT 129927 Query 16244 ACCTGGCTTACCCGCGAGGAGGGCACCTCGTGGAATCTTGGCGCC---ACTTCCAAAGTA 16300 || || |||| |||| || || || || |||||||| || || |||| | Sbjct 129926 TCCCGGGGGGCCCGATAGGATAGCGCCACGCGGGATCTTGGCACCCAGACGCACAAACT- 129868 Query 16301 TCTCTCAGGTTGCTTAAGAAAATCCACAATCTCTTCCAATTCATCTTTGGCGGCGTCAAT 16360 | || || | ||| || || | ||||| ||| | || | ||||| | || || Sbjct 129867 --TTTCGGGCTTCTTGAGGAACTGCACAAACTCCATGATCTCGACCTTGGCCTCATCCAT 129810 Query 16361 CCCCTCAACATCGGTAAAC 16379 ||| | ||||||| |||| Sbjct 129809 CCCAGCCACATCGGCAAAC 129791 >seq1 Length=236255 Score = 82.4 bits (90), Expect = 9e-11 Identities = 165/242 (68%), Gaps = 2/242 (1%) Strand=Plus/Minus Query 163548 ATGGGCGTGTTGCGCCACGATCTGGTCTCGCTGTGAAACACGGTATCCAAGTTGGTGCGG 163607 |||| || | || || || || || || |||| |||||| ||| | || || | Sbjct 196607 ATGGCCGCATCGCCCCCCGCTCCGGCCTGGCTGCTAAACACTTCATCGATACCGGAGCTG 196548 Query 163608 GTGTTATTGATCCCGACTACACGGGTGAAGTCAAAGTCGTTCTCTTCAATCATGGAGACA 163667 |||| |||||| |||| ||| ||||| ||||| || | | |||||||| ||| Sbjct 196547 GTGTCATTGATGCCGATTACCGTGGTGAGGTCAAGGTTCTCTTGTTCAATCACCACGACG 196488 Query 163668 AAGACTTTGAGGT-AAAGAGGGGGGAGCGCATCGCACAACTTGTTCTTGAGAGGTGTGAG 163726 ||||| ||||| |||||||| | | |||||||| || || || | || | || Sbjct 196487 CCGACTTCGAGGTCAAAGAGGGCG-ACCGCATCGCTCAGCTAGTGTTGGAACGTATTGTA 196429 Query 163727 ACACCCGATGTGGAGGAAATTGGTCTCCTTGAAGAGACGGAGAGGGGTGCGGGTGGTTTT 163786 || |||||||| | || ||| | | |||||||||| | | || || ||||||||| Sbjct 196428 ACTCCCGATGTTGTCGAGGTTGCTGTTCTTGAAGAGAGTGTCCGTGGAGCTGGTGGTTTT 196369 Query 163787 GG 163788 || Sbjct 196368 GG 196367 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 620731498211600