Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceratocystis_20albifundus_20[genbank_20GCA_5F000813685.1_202015-01- 02] 1,405 sequences; 26,875,327 total letters Query= NC_014767.1 Length=184095 Score E Sequences producing significant alignments: (Bits) Value seq539 163 3e-35 seq564 116 4e-21 seq431 89.7 6e-13 >seq539 Length=40911 Score = 163 bits (180), Expect = 3e-35 Identities = 616/954 (65%), Gaps = 23/954 (2%) Strand=Plus/Plus Query 110281 GGGAGAGCAATAGACGCAAGATTGCACACAGAAGTCTCGTCTTTGTCGGTGTATTCCAAA 110340 || || || | ||| || || |||||||||| | |||||| | | || || | | Sbjct 17064 GGAAGGGCCAGAGATGCTAGGTTGCACACAGCAACCTCGTCAGGGGCACAATACTCGATA 17123 Query 110341 ATTTCCGTACACAAGTTGGAACTCTTAATGACACCCAAGTTCTTCTGATTCGATTTGGAG 110400 || || || |||| ||| || || ||| ||| | || |||||||| ||| | Sbjct 17124 ATCTCAGTGCACAGGTTTGAGCTGCGGATGGTACCTAGATTTTTCTGATTGCTCTTGCGG 17183 Query 110401 TTGCATGCATCCTTATAGAGCATGTATGGGGTACCAGTTTCCGTCTGTGACTTGAGAATG 110460 ||||| || || || |||||| | ||| | ||||| || ||||| | || |||||| Sbjct 17184 TTGCAATGGTCTTTGTAAAGCATGAAAGGGTTGCCAGTCTCAGTCTGGGCCTCCAGAATG 17243 Query 110461 GCCTTCCATA-CATCGGCGGCGGGGACAGTTGCGTTAGCGAGACCTTCCTCCTCGTACTT 110519 || | ||| | | || | ||| |||| | | | || |||| |||| ||||||||| Sbjct 17244 GCATACCACAGCTTCTG-GGCCTTGACAACCGTGCGACCGCGACCCTCCTTCTCGTACTT 17302 Query 110520 GGTGTACAAGTCCTCAAATTCCTGTCCGTACACATCAGAAAGACCCTTCGCCTTG-TCGG 110578 |||| ||||||| || | || || ||| | | | || || || | || Sbjct 17303 TTCATACAGAGCCTCAAACTCTTCGCCATAGCAATCCGCCA-AGCCGGGGCATTCATTGG 17361 Query 110579 GACAGAAGAGGGACCAATTTCCACCCTCCTCAACCCTCTTCATGAACAGGTCAGGAATCC 110638 | || | ||| | ||| | || | |||||| | ||||||||||| ||| |||| Sbjct 17362 GGCACATGAGAGTCCAGTCCTCATTTTTCTCAACACGCTTCATGAACAAGTCGCAGATCC 17421 Query 110639 ACATCGCCGAGAAAAGGTCACGGCAACGAGCCTCTTCATCACCTTGGTTGAGGCGTAGCT 110698 ||| ||| |||| |||||||| ||| | ||||| | || ||||| ||| | | Sbjct 17422 ACAGGGCCAAGAATAGGTCACGAGCACGGACTTCTTCCTTTCCGTGGTTCTTGCGCAAGT 17481 Query 110699 CCAAAAAGTCCATGATATCCGAGTGCCATGGTTCGAGATAGACAGCGATGGATCCCTTAC 110758 | | || || | || ||| | |||||||| ||||| || | || | || ||| | Sbjct 17482 CGAGGAACTCGAAGACATCAGCATGCCATGGCTCGAGGTAAATGGCAAAGGCTCC---AG 17538 Query 110759 GACG------ACCCGCCTGGTTAACATAGCGTGCTGTGGCATTGAAGACCCTGAGCATAG 110812 | || || |||||| |||||| || || ||| ||||| || | ||||| | Sbjct 17539 GTCGCTTGTTTCCACCCTGGTCAACATAACGGGCAGTGTTGTTGAAAACACGTAGCATGG 17598 Query 110813 GAATAATTCCATCGGATTGACCATTTGTACCCCTAATTCTGGACTTATTGGCACGAATGT 110872 ||| || || | || ||| || ||||| ||| || | |||||||||| Sbjct 17599 GAACGATACCGTTCGAAGTACCGTTAGTACCAGCAATGTAAGAGCCAGTGGCACGAATAC 17658 Query 110873 CGTGGATATGCATACCAATACCACCCGCCCACTTACTAATTTGTGCAC-ACTCTGTGAGT 110931 ||||| || | ||| ||||| || ||| ||| ||| |||| | ||| |||| Sbjct 17659 GGTGGACATTGAGACCGATACCGCCAGCCATCTTGGAAATCATGGCACAAGTCT-TGAGG 17717 Query 110932 GTACCATAAATACCATCAATCGAATCTGCCTTGTTGGCAATTAGAAAGCAAGAAGACATC 110991 ||| | ||||| || || || || | || || | | ||| ||||| ||||||| | Sbjct 17718 GTATCGTAAATGCCCTCGATGCTGTCATCTTTCATGTCGACTAGGAAGCACGAAGACAAC 17777 Query 110992 TGAGGACGAGGCGTTCCCGCATTGAAGAGTGTAGGTGTCGCATGAATGAACAGACCTTG- 111050 |||| | || || || ||||| ||||| ||||||| || ||| ||| ||| |||| Sbjct 17778 TGAGCCTGGGGGGTACCAGCATTAAAGAGCGTAGGTGATGCGTGAGTGA--AGAACTTGC 17835 Query 111051 -GGACATCTTGTTGTATGTGTCGAGTGCGGAGGGT--ACATCTTTACCGTGAATACCAAT 111107 |||||| |||||| || || | || | | | || | | ||| |||||| | Sbjct 17836 TGGACATAAAGTTGTAGGTTTCAA--GCACACGTTCGACTTTGTCACCCCAAATACCCAC 17893 Query 111108 GGCAACTCGCATGAACATATATTGAGGCGTTTCGATTAGCTTTCCATCAACACGCTGAAG 111167 ||||| ||||| | ||| | || || ||| | | ||| ||||| | | | || Sbjct 17894 AGCAACACGCATTATCATGTGCTGGGGACGTTCAACAATCTTACCATCGAGTTTCAGTAG 17953 Query 111168 GTAACTCTTCTCTAGGGTCTTGAGACCAAAGTATCCAAAATCGAAATCACGATC 111221 |||| ||| || ||||| | |||||||| | | ||| |||||||| Sbjct 17954 GTAAGAACGCTCAAGAGTCTTAAAGCCAAAGTACTGGTAGTTGAAGTCACGATC 18007 Score = 123 bits (136), Expect = 3e-23 Identities = 315/477 (66%), Gaps = 12/477 (3%) Strand=Plus/Plus Query 109369 TCTAAACTAAATTGGATTGGTCGAGCTTTCGCCTTCGAGCGAAGATAATACATACCCGTT 109428 |||| | | |||||||| ||| ||| |||| || || || || ||||| ||||| Sbjct 16158 TCTACAGTGAATTGGATAGGTGCAGCAGCAGCCTGCGTACGCAGGTAGTACATGCCCGTC 16217 Query 109429 TTGAGACCAGCCTTCCATGCGTACATATGCATTGAAGAGAGTTTGGAAAGTGTCGGACTC 109488 |||||||| ||||| || | ||||| | || ||| | || ||| Sbjct 16218 TTGAGACCTAGTTTCCAGCCGGCAAAGTGCATGCTGGTGATCTTGCCCATGGTGGGATCT 16277 Query 109489 TCCATAAACAAGTTCATCGACTGAGACTGATCGATGAATCGACCACGATCAGCCGCCATG 109548 | ||| | ||| | ||||| || || || ||||| |||||| ||||| ||||| Sbjct 16278 TTCATGTGAATGTTTAGAGACTGCGATTGGTCAATGAAAGCACCACGGTCAGCAGCCATT 16337 Query 109549 TCGATGA---TACACTTTTGGCTAATTTCCCAGACAGTCTTGTACAAATTCTTGATATCA 109605 | | | ||| || || ||||||||| || |||||||||| | || |||||| Sbjct 16338 TGCACAACTGTACGCT---GGGAAATTTCCCAAACGGTCTTGTACAGAGCTTTAATATCA 16394 Query 109606 TCGGGAATGTCCACGATGTTTTGAATAGAGCCACCAGCCTTCACCATGAGATCCTTCATC 109665 | |||||| |||||| |||||||| ||| || | ||| | | |||||| Sbjct 16395 GCAGGAATGCTAGGGATGTTCTGAATAGATCCATTGTCCGCAATAATGCGGTTCTTCATA 16454 Query 109666 TCTTTCGACCAGAGACCGACCTTTTTGAGATCGTCAACAAGATGCTTG---TTGACCACG 109722 | | ||||| | ||| | | || | |||| || || | |||||||| Sbjct 16455 TTGTCAGACCATAAACCAAGATC---GACAAGGTCACGTAGGAGCCAGGGGTTGACCACC 16511 Query 109723 ACAAATTCACCAGCAAGTGTGCGTCGGAGGTAGATGTTAGTCGTGTAGGGTTCGAAACAC 109782 || || |||||||| ||| || |||||||||| | |||||||||||||| ||| Sbjct 16512 TGGAACTCGCCAGCAAGAACGCGGCGCTGGTAGATGTTGGATGTGTAGGGTTCGAAGCAC 16571 Query 109783 TCATTGTTGCCTAGGATTTGTGCAGTGGAAGCTGTGGGCATGGGAGCCATGAGAAGA 109839 ||||||||||| || || || | ||| ||||| |||||||| || | |||||| Sbjct 16572 TCATTGTTGCCCAGAATCTGCGATGTGCTGGCTGTAGGCATGGGTGCAACCAGAAGA 16628 >seq564 Length=132701 Score = 116 bits (128), Expect = 4e-21 Identities = 311/465 (67%), Gaps = 24/465 (5%) Strand=Plus/Minus Query 11503 CGATCGAAACGACCTGGGCGGAGTAGAGCATCATCAAGAATATCGACACGGTTTGTAGCG 11562 |||||||| ||||| || | | || || | ||| || | ||| | ||||| || || Sbjct 130291 CGATCGAATCGACCGGGTCTCATCAGCGCCTTATCCAGGACATCAGCGCGGTTGGTGCCG 130232 Query 11563 GCAATGACTACAAT--GCCAGTCTCATTGTCGAAACCGTCCATTTCTGTGAGAAGCTGGT 11620 || | ||| || || || | | ||| ||| || |||||||| || || | ||||| Sbjct 130231 GCCAGGACGACGATTTGCTCGGCGG--TGTTGAAGCCATCCATTTCAGTCAGGATCTGGT 130174 Query 11621 TGATCGTCTGTTCACGCTCATCGTTGGAGGGCATACCAC-CTGCCGAA--CGCTTCTT-- 11675 | | ||| ||||||||||||||| | | ||| | | | | ||||||| Sbjct 130173 TCAGCGTGGACTCACGCTCATCGTTGCCA--CCTCCCATGCGGTTGGAGTCGCTTCTGGA 130116 Query 11676 ---ACCGACAGCGTCAATCTCATCGATGAATACGATACACGGTTGGTTGGCACGTGCCTG 11732 ||| | ||| |||||||| || || || | ||| || || ||| || ||| Sbjct 130115 GCGACCAATAGCATCAATCTCGTCAATAAAGATGATGCATGGCGCGTTCTTGCGCGCCGT 130056 Query 11733 TTCGAAAAGTTCACGTACACGCTTCGCTCCAACACCTACGAACATCTCAACGAAGTTTGC 11792 | ||||| ||||| || ||| || || || || || |||||||| || || | | Sbjct 130055 AGCAAAAAGATCACGCACTCGCGACGGGCCCACGCCGACAAACATCTCGACAAACTCGGA 129996 Query 11793 G--GCAGAACACTGAATGAAGGGAACATTAGACTCACCAGCGATGGCTCGAGCGAGGAGA 11850 | || || ||||||| ||||||||| ||||| ||||| |||| || || || Sbjct 129995 GCCGCTGA-CACTGAA-GAAGGGAACGCCTGACTCGCCAGCCGTGGCCTTTGCTAGCAGC 129938 Query 11851 GTCTTACCCGTACCAGGTGCACCAGCGAGAAGGGCGCCACGGGGGATCTTGGCACC---A 11907 ||||| ||||| || || | || | || | |||||||| |||||||||||||| | Sbjct 129937 GTCTTGCCCGTTCCCGGGGGGCCCGATAGGATAGCGCCACGCGGGATCTTGGCACCCAGA 129878 Query 11908 CTTCCAAAGTAGCGCTCAGGCTTCTTGAGGAAGTCCACAATCTCC 11952 | |||| | || |||||||||||||| | ||||| |||| Sbjct 129877 CGCACAAACT---TTTCGGGCTTCTTGAGGAACTGCACAAACTCC 129836 >seq431 Length=155802 Score = 89.7 bits (98), Expect = 6e-13 Identities = 349/540 (65%), Gaps = 23/540 (4%) Strand=Plus/Minus Query 119208 TAGTCACCCACCCTCTTTTCGAAGAAATTCGTCTTACCATCGAGTGAGATGTTTTCCATA 119267 || ||||| || | ||| || ||||| || ||||| || |||| |||||||| ||||| Sbjct 44475 TAATCACCGACACGCTTCTCAAAGAAGTTAGTCTTGCCGCCGAGCGAGATGTTCTCCATG 44416 Query 119268 AAGTCAAAAGGATTTTTGGA---GTTC-CAGATTGGTGG--TTGACCAACTTGTTTCAGA 119321 ||||| || || ||| ||| || | | || || | | || |||| || Sbjct 44415 AAGTCGAAGGGGTTTGTGGCACGGTACACCTTTTCGTTGCCTAGAGCAACA------AGC 44362 Query 119322 AGACGATCGGAGACATACTCGATATATTCGGACATCTTTTCCGAATTCATACCTATGAGA 119381 || || || | ||| |||| || || | |||| || | ||||| |||| ||| Sbjct 44361 AGGCGGTCCGCAACAAACTCAATGTACTGCTTCATCAGATCGGCGTTCATTCCTAGCAGA 44302 Query 119382 TTACACGGGAGAGCATCGAGGATGAAGTTCTTCTCGATCTCCACAGCTTCTTTCACGATG 119441 || || ||||| ||| | ||| | |||||||||| | || || || | | ||| Sbjct 44301 CCGCAGGGAAGAGCCTCGGTCAGGAACTCCTTCTCGATCACAACGGCATCAGTGATGATC 44242 Query 119442 GAGTGAA-TAGTTTCTGTCGATGGT--TTGTTTCTCAAGAGTTTAAACAACTCTACGGCA 119498 || | ||| | || | || |||||| | | | |||| | ||| Sbjct 44241 TTTTGCACTAGGTCCTTGCTGGGGCGGTTGTTT---AGGTGCGAGAACAGCAGGCAAGCA 44185 Query 119499 AATTCTTGATGAAGCCCTTCATCCCGAGAGATGAGCTCATTACTGAAGCAAAGTCCAGGC 119558 || || || || || || || ||||| |||||||| || |||| || |||||| Sbjct 44184 AAGTCGGTGTGCAGGCCCTCGTCACGAGAAATGAGCTCGTTTGAGAAGGTCAGACCAGGC 44125 Query 119559 ATGAGTCCTCTTTTCTTTAGCCAAAAGATGGCACAAAAACTTCCAGAAAAGAAGATGCCC 119618 ||||| || | || ||||| ||||||| || || || || ||||||||| Sbjct 44124 ATGAGACCACGCTTGCGCAGCCAGAAGATGGAGGCGAAGGCACCCGAGAAAAAGATGCCC 44065 Query 119619 TCCACACAGGCGAAAGCGAATAGACGCTCAGCAAAAGGTCGA-GACTTGTC---GAACCA 119674 || ||| || || || | ||| |||| || ||| || || |||||| || ||| Sbjct 44064 TCGACAGCAGCAAAGGCAACTAGGCGCTGGGC-AAACGTAGACTCCTTGTCGGTGATCCA 44006 Query 119675 CTTGAGAGCCCAGTTGGCCTTACGCTCTATGCAGGGGACAGTTTGGATGGCTTCGAAAAG 119734 ||| |||||||||| |||||| || |||||||| | ||| | ||||| | ||| || Sbjct 44005 CTTCAGAGCCCAGTCGGCCTTGCGACGGATGCAGGGAATAGTGTCAATGGCATTGAATAG 43946 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 588965656109000