Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ceratocystis_20albifundus_20[genbank_20GCA_5F000813685.1_202015-01-
02] 1,405 sequences; 26,875,327 total letters
Query= NC_015326.1
Length=346754
Score E
Sequences producing significant alignments: (Bits) Value
seq492 145 2e-29
seq576 118 2e-21
>seq492
Length=47418
Score = 145 bits (160), Expect = 2e-29
Identities = 152/200 (76%), Gaps = 0/200 (0%)
Strand=Plus/Minus
Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991
|||||||| ||||||||||| || || || ||||| |||| ||||| | ||||| ||
Sbjct 44749 ACAAGGTGGAGAGTGGACTCCTTCTGGATGTTGTAGTCGGACAGAGTGCGGCCATCCTCA 44690
Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051
|||||||| || || ||||| | || || ||||| || |||||||| || ||||| ||
Sbjct 44689 AGCTGCTTGCCAGCAAAGATCAAGCGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCCTGG 44630
Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTT 195111
|| || ||||||||| || || ||||||||| || || || ||||||| |||||
Sbjct 44629 ATCTTGGACTTGACGTTGTCGATCGTGTCCGAAGACTCGACCTCCAGGGTAATGGTCTTA 44570
Query 195112 CCTGTCAAAGTTTTTACGAA 195131
|| |||| || || |||||
Sbjct 44569 CCCGTCAGGGTCTTGACGAA 44550
>seq576
Length=37320
Score = 118 bits (130), Expect = 2e-21
Identities = 148/203 (73%), Gaps = 0/203 (0%)
Strand=Plus/Minus
Query 194938 TGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTGC 194997
||||||||||| || || || || ||||| || | || || | ||||| ||||| |||
Sbjct 12911 TGAAGAGTGGATTCCTTCTGGATGTTGTAGTCAGAGAGGGTGCGACCATCCTCGAGTTGC 12852
Query 194998 TTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTT 195057
|| || || ||||| || || || ||||| ||||| || || || ||||| || || ||
Sbjct 12851 TTTCCAGCAAAGATGAGACGCTGCTGGTCAGGAGGGATACCCTCCTTGTCCTGGATCTTG 12792
Query 195058 TGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTC 195117
|||||| || ||||| || |||||| || || || || |||| ||||| || |||
Sbjct 12791 GACTTGACATTGTCAATAGTATCCGAAGACTCGACCTCGAGTGTAATAGTCTTGCCCGTC 12732
Query 195118 AAAGTTTTTACGAACACTTGCAT 195140
| || || || || | ||||||
Sbjct 12731 AGGGTCTTGACAAAGATTTGCAT 12709
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1109461627597635
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |