Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceratocystis_20albifundus_20[genbank_20GCA_5F000813685.1_202015-01- 02] 1,405 sequences; 26,875,327 total letters Query= NC_015398.1 Length=101487 Score E Sequences producing significant alignments: (Bits) Value seq1207 102 5e-17 seq576 98.7 6e-16 >seq1207 Length=77990 Score = 102 bits (112), Expect = 5e-17 Identities = 141/195 (72%), Gaps = 8/195 (4%) Strand=Plus/Minus Query 34794 TTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATATT 34853 ||||||||||| ||||| || ||| | || |||| |||||||| || || || || || Sbjct 69257 TTCTGAATGTTGTAGTCAGACAGGGTGCGGCCATCCTCCAGCTGCTTGCCAGCGAAGATC 69198 Query 34854 AGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGATGCT 34913 || || |||||||| | || | ||||||||||| |||||| ||||| || | Sbjct 69197 AGGCGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCCTGAATCTTAGACTTGAC--AT--T 69142 Query 34914 ATCGAT----TCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCAC 34969 ||||| || || |||||| |||| ||| || || || ||||| || ||||| || Sbjct 69141 GTCGATAGTGTCCGAGGACTCAACCTCGAGGGTAATCGTCTTACCCGTAAGGGTCTTGAC 69082 Query 34970 AAAGATCTGCATATT 34984 || |||||||| || Sbjct 69081 GAAAATCTGCATCTT 69067 >seq576 Length=37320 Score = 98.7 bits (108), Expect = 6e-16 Identities = 155/218 (71%), Gaps = 8/218 (4%) Strand=Plus/Minus Query 34769 CAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATC 34828 || |||||| |||| ||| ||| ||||| ||||| ||||| || ||| | || |||| Sbjct 12921 CAGAACCAAATGAAGAGTGGATTCCTTCTGGATGTTGTAGTCAGAGAGGGTGCGACCATC 12862 Query 34829 ATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTC 34888 || || || ||||| ||||| || || || |||||||| | || | ||||||||||| Sbjct 12861 CTCGAGTTGCTTTCCAGCAAAGATGAGACGCTGCTGGTCAGGAGGGATACCCTCCTTGTC 12802 Query 34889 GCTAATCTTCTGTTTGACGGATGCTATCGAT--TCACCG--GCCTCAACATCGACGGTTA 34944 ||||| ||||| || | || || | ||| | ||| || |||| || | Sbjct 12801 CTGGATCTTGGACTTGAC--AT--TGTCAATAGTATCCGAAGACTCGACCTCGAGTGTAA 12746 Query 34945 TGGTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCATA 34982 | || || ||||| || ||||| |||||||| |||||| Sbjct 12745 TAGTCTTGCCCGTCAGGGTCTTGACAAAGATTTGCATA 12708 Score = 93.3 bits (102), Expect = 3e-14 Identities = 146/207 (71%), Gaps = 8/207 (4%) Strand=Plus/Minus Query 34769 CAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATC 34828 || ||||||||||| || ||| ||||| ||||| ||||| || ||| | || | || Sbjct 12465 CAGAACCAAGTGAAGAGTAGATTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCGTC 12406 Query 34829 ATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTC 34888 || ||||| ||||||||||| || || || ||||| || | || | |||||||| || Sbjct 12405 CTCAAGCTGCTTTCCGGCAAAAATGAGACGCTGCTGATCCGGAGGGATACCCTCCTTATC 12346 Query 34889 GCTAATCTTCTGTTTGACGGATGCTATCGAT----TCACCGGCCTCAACATCGACGGTTA 34944 ||||| ||||| || | ||||| ||| || ||| || |||| ||| | Sbjct 12345 CTGGATCTTGGACTTGAC--AT--TGTCGATGGTATCAGAGGACTCGACTTCGAGGGTGA 12290 Query 34945 TGGTTTTTCCCGTGAGAGTCTTCACAA 34971 |||| || || || || ||||| |||| Sbjct 12289 TGGTCTTGCCGGTAAGGGTCTTGACAA 12263 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 324628041156840