Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ceratocystis_20albifundus_20[genbank_20GCA_5F000813685.1_202015-01-
02] 1,405 sequences; 26,875,327 total letters
Query= NC_015398.1
Length=101487
Score E
Sequences producing significant alignments: (Bits) Value
seq1207 102 5e-17
seq576 98.7 6e-16
>seq1207
Length=77990
Score = 102 bits (112), Expect = 5e-17
Identities = 141/195 (72%), Gaps = 8/195 (4%)
Strand=Plus/Minus
Query 34794 TTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATATT 34853
||||||||||| ||||| || ||| | || |||| |||||||| || || || || ||
Sbjct 69257 TTCTGAATGTTGTAGTCAGACAGGGTGCGGCCATCCTCCAGCTGCTTGCCAGCGAAGATC 69198
Query 34854 AGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGATGCT 34913
|| || |||||||| | || | ||||||||||| |||||| ||||| || |
Sbjct 69197 AGGCGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCCTGAATCTTAGACTTGAC--AT--T 69142
Query 34914 ATCGAT----TCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCAC 34969
||||| || || |||||| |||| ||| || || || ||||| || ||||| ||
Sbjct 69141 GTCGATAGTGTCCGAGGACTCAACCTCGAGGGTAATCGTCTTACCCGTAAGGGTCTTGAC 69082
Query 34970 AAAGATCTGCATATT 34984
|| |||||||| ||
Sbjct 69081 GAAAATCTGCATCTT 69067
>seq576
Length=37320
Score = 98.7 bits (108), Expect = 6e-16
Identities = 155/218 (71%), Gaps = 8/218 (4%)
Strand=Plus/Minus
Query 34769 CAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATC 34828
|| |||||| |||| ||| ||| ||||| ||||| ||||| || ||| | || ||||
Sbjct 12921 CAGAACCAAATGAAGAGTGGATTCCTTCTGGATGTTGTAGTCAGAGAGGGTGCGACCATC 12862
Query 34829 ATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTC 34888
|| || || ||||| ||||| || || || |||||||| | || | |||||||||||
Sbjct 12861 CTCGAGTTGCTTTCCAGCAAAGATGAGACGCTGCTGGTCAGGAGGGATACCCTCCTTGTC 12802
Query 34889 GCTAATCTTCTGTTTGACGGATGCTATCGAT--TCACCG--GCCTCAACATCGACGGTTA 34944
||||| ||||| || | || || | ||| | ||| || |||| || |
Sbjct 12801 CTGGATCTTGGACTTGAC--AT--TGTCAATAGTATCCGAAGACTCGACCTCGAGTGTAA 12746
Query 34945 TGGTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCATA 34982
| || || ||||| || ||||| |||||||| ||||||
Sbjct 12745 TAGTCTTGCCCGTCAGGGTCTTGACAAAGATTTGCATA 12708
Score = 93.3 bits (102), Expect = 3e-14
Identities = 146/207 (71%), Gaps = 8/207 (4%)
Strand=Plus/Minus
Query 34769 CAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATC 34828
|| ||||||||||| || ||| ||||| ||||| ||||| || ||| | || | ||
Sbjct 12465 CAGAACCAAGTGAAGAGTAGATTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCGTC 12406
Query 34829 ATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTC 34888
|| ||||| ||||||||||| || || || ||||| || | || | |||||||| ||
Sbjct 12405 CTCAAGCTGCTTTCCGGCAAAAATGAGACGCTGCTGATCCGGAGGGATACCCTCCTTATC 12346
Query 34889 GCTAATCTTCTGTTTGACGGATGCTATCGAT----TCACCGGCCTCAACATCGACGGTTA 34944
||||| ||||| || | ||||| ||| || ||| || |||| ||| |
Sbjct 12345 CTGGATCTTGGACTTGAC--AT--TGTCGATGGTATCAGAGGACTCGACTTCGAGGGTGA 12290
Query 34945 TGGTTTTTCCCGTGAGAGTCTTCACAA 34971
|||| || || || || ||||| ||||
Sbjct 12289 TGGTCTTGCCGGTAAGGGTCTTGACAA 12263
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 324628041156840
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |