Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceratocystis_20albifundus_20[genbank_20GCA_5F000813685.1_202015-01- 02] 1,405 sequences; 26,875,327 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq539 127 2e-24 >seq539 Length=40911 Score = 127 bits (140), Expect = 2e-24 Identities = 590/935 (63%), Gaps = 16/935 (2%) Strand=Plus/Plus Query 47876 AAGTGCTATAGATGCTAGATTACATACAGCTACCTCATTTGGATTAGTATATTGTATTAT 47935 ||| || | ||||||||| || || ||||| ||||| | || | ||| | || || Sbjct 17066 AAGGGCCAGAGATGCTAGGTTGCACACAGCAACCTCGTCAGGGGCACAATACTCGATAAT 17125 Query 47936 TTCAGCACATAGATTACCACATTTGATAGTACCCAAATTTTGATGATTATTNNNNTTGTT 47995 |||| || || || | ||| ||||| | ||||| ||||| | ||| Sbjct 17126 CTCAGTGCACAGGTTTGAGCTGCGGATGGTACCTAGATTTTTCTGATTGCTCTTGCGGTT 17185 Query 47996 ACATGCGTCCTTGTAAAGCATAAAAGGTGTTCCAGTTTCTATCTGAGATTCAATGATAGA 48055 || ||| ||||||||||| ||||| | ||||| || |||| | || | || | Sbjct 17186 GCAATGGTCTTTGTAAAGCATGAAAGGGTTGCCAGTCTCAGTCTGGGCCTCCAGAATGGC 17245 Query 48056 TTTCCAAACAGTCCTAGCCTTTATAACAGCTCTAGCTTTATTATCATGTTCGTATTTAGT 48115 | ||| | || ||||| | ||| | | | | | || | ||||| || Sbjct 17246 ATACCACAGCTTCTGGGCCTTGACAACCGTGCGACCGCGACCCTCCTTCTCGTACTTTTC 17305 Query 48116 ATATAACTTCTCAAATTCATCCCCATACACATTATCTAACCCAGGACATTCATTAGGACA 48175 ||| | |||||| || || ||||| || | || || || |||||||| || || Sbjct 17306 ATACAGAGCCTCAAACTCTTCGCCATAGCAATCCGCCAAGCCGGGGCATTCATTGGGGCA 17365 Query 48176 CATCAATGACCAATCCTCATCATTTTTTACTCTAGTCATAAATATATCTGGTATCCAAAG 48235 ||| | | ||| ||||||| || | || | |||| || | || ||||| || Sbjct 17366 CATGAGAGTCCAGTCCTCATTTTTCTCAACACGCTTCATGAACAAGTCGCAGATCCACAG 17425 Query 48236 AGCTATAAATAAATCCCTAGTTCTTAGTTCTTCATTGCCACTATTCCTTTTAAGTTCAAG 48295 || | |||| || | || | | |||||| || || ||| | | || || Sbjct 17426 GGCCAAGAATAGGTCACGAGCACGGACTTCTTCCTTTCCGTGGTTCTTGCGCAAGTCGAG 17485 Query 48296 AAAGTCCATTATATCAGCATGCCATGGTTCTAAATATATTGCCATTACACCTGGTCGTTT 48355 || || | | ||||||||||||||| || | || || || | | || ||||| || Sbjct 17486 GAACTCGAAGACATCAGCATGCCATGGCTCGAGGTAAATGGCAAAGGCTCCAGGTCGCTT 17545 Query 48356 ATTACCTCCTTGATCTATATATCTGGCAGTATTGTTATAAACTCTTAACATTGGGACAAT 48415 || || || || || | ||| | |||||| ||||| |||| | || ||| || || || Sbjct 17546 GTTTCCACCCTGGTCAACATAACGGGCAGTGTTGTTGAAAACACGTAGCATGGGAACGAT 17605 Query 48416 ACCATTTGATATACCATTGGTTCCCGAAATATAACTTCCACTAGCTCTTATA--TTACTA 48473 ||| || || |||| || || || | ||| ||| ||| | || | ||| | Sbjct 17606 ACCGTTCGAAGTACCGTTAGTACCAGCAATGTAAGAGCCAGTGGCACGAATACGGTGGAC 17665 Query 48474 ATTGAAATACCTATACCACCTGCCATTTTAGATATTAGAGCACACCGTTTAAGGGTATCA 48533 |||| | ||| ||||| || ||||| || || || | ||||| || |||||||| Sbjct 17666 ATTG--AGACCGATACCGCCAGCCATCTTGGAAATCATGGCACAAGTCTTGAGGGTATCG 17723 Query 48534 TAAATTCCTTCTATACTATCATCTATCATATTTAATAGAAAACAACTAGACATTTGCGGA 48593 ||||| || || || || |||||| |||| | | ||| || || ||||| || | Sbjct 17724 TAAATGCCCTCGATGCTGTCATCTTTCATGTCGACTAGGAAGCACGAAGACAACTGAGCC 17783 Query 48594 TGACAAGTTCCTGAATTAAATAATGTTGGAGATGCATGAATAAACCATTTCTCTGATAAC 48653 || || || | |||||| | || || ||||| ||| | || | || || | Sbjct 17784 TGGGGGGTACCAGCATTAAAGAGCGTAGGTGATGCGTGAGTGAAGAACTTGCTGGACATA 17843 Query 48654 AATTTATATGTTTCAATAACA-----GAATCTAT-ATCCCATTGATGTATACCTATAGAT 48707 || || || ||||||| ||| || | | | | |||| ||||| | || Sbjct 17844 AAGTTGTAGGTTTCAAGCACACGTTCGACTTTGTCACCCCA------AATACCCACAGCA 17897 Query 48708 ACACGCATTAACATATATTGAGGTCTTTCAACAATTTTGTTATTTATTTTCAAAAGATAT 48767 |||||||||| ||| | || || | ||||||||| || || | ||||| || || Sbjct 17898 ACACGCATTATCATGTGCTGGGGACGTTCAACAATCTTACCATCGAGTTTCAGTAGGTAA 17957 Query 48768 GATTTTTCCAATGTTTTAAAACCAAAATAGTTGTA 48802 || || | || ||||| ||||| || | ||| Sbjct 17958 GAACGCTCAAGAGTCTTAAAGCCAAAGTACTGGTA 17992 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 562098927964200