Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ceratocystis_20albifundus_20[genbank_20GCA_5F000813685.1_202015-01-
02] 1,405 sequences; 26,875,327 total letters
Query= NC_015960.1
Length=175699
Score E
Sequences producing significant alignments: (Bits) Value
seq539 127 2e-24
>seq539
Length=40911
Score = 127 bits (140), Expect = 2e-24
Identities = 590/935 (63%), Gaps = 16/935 (2%)
Strand=Plus/Plus
Query 47876 AAGTGCTATAGATGCTAGATTACATACAGCTACCTCATTTGGATTAGTATATTGTATTAT 47935
||| || | ||||||||| || || ||||| ||||| | || | ||| | || ||
Sbjct 17066 AAGGGCCAGAGATGCTAGGTTGCACACAGCAACCTCGTCAGGGGCACAATACTCGATAAT 17125
Query 47936 TTCAGCACATAGATTACCACATTTGATAGTACCCAAATTTTGATGATTATTNNNNTTGTT 47995
|||| || || || | ||| ||||| | ||||| ||||| | |||
Sbjct 17126 CTCAGTGCACAGGTTTGAGCTGCGGATGGTACCTAGATTTTTCTGATTGCTCTTGCGGTT 17185
Query 47996 ACATGCGTCCTTGTAAAGCATAAAAGGTGTTCCAGTTTCTATCTGAGATTCAATGATAGA 48055
|| ||| ||||||||||| ||||| | ||||| || |||| | || | || |
Sbjct 17186 GCAATGGTCTTTGTAAAGCATGAAAGGGTTGCCAGTCTCAGTCTGGGCCTCCAGAATGGC 17245
Query 48056 TTTCCAAACAGTCCTAGCCTTTATAACAGCTCTAGCTTTATTATCATGTTCGTATTTAGT 48115
| ||| | || ||||| | ||| | | | | | || | ||||| ||
Sbjct 17246 ATACCACAGCTTCTGGGCCTTGACAACCGTGCGACCGCGACCCTCCTTCTCGTACTTTTC 17305
Query 48116 ATATAACTTCTCAAATTCATCCCCATACACATTATCTAACCCAGGACATTCATTAGGACA 48175
||| | |||||| || || ||||| || | || || || |||||||| || ||
Sbjct 17306 ATACAGAGCCTCAAACTCTTCGCCATAGCAATCCGCCAAGCCGGGGCATTCATTGGGGCA 17365
Query 48176 CATCAATGACCAATCCTCATCATTTTTTACTCTAGTCATAAATATATCTGGTATCCAAAG 48235
||| | | ||| ||||||| || | || | |||| || | || ||||| ||
Sbjct 17366 CATGAGAGTCCAGTCCTCATTTTTCTCAACACGCTTCATGAACAAGTCGCAGATCCACAG 17425
Query 48236 AGCTATAAATAAATCCCTAGTTCTTAGTTCTTCATTGCCACTATTCCTTTTAAGTTCAAG 48295
|| | |||| || | || | | |||||| || || ||| | | || ||
Sbjct 17426 GGCCAAGAATAGGTCACGAGCACGGACTTCTTCCTTTCCGTGGTTCTTGCGCAAGTCGAG 17485
Query 48296 AAAGTCCATTATATCAGCATGCCATGGTTCTAAATATATTGCCATTACACCTGGTCGTTT 48355
|| || | | ||||||||||||||| || | || || || | | || ||||| ||
Sbjct 17486 GAACTCGAAGACATCAGCATGCCATGGCTCGAGGTAAATGGCAAAGGCTCCAGGTCGCTT 17545
Query 48356 ATTACCTCCTTGATCTATATATCTGGCAGTATTGTTATAAACTCTTAACATTGGGACAAT 48415
|| || || || || | ||| | |||||| ||||| |||| | || ||| || || ||
Sbjct 17546 GTTTCCACCCTGGTCAACATAACGGGCAGTGTTGTTGAAAACACGTAGCATGGGAACGAT 17605
Query 48416 ACCATTTGATATACCATTGGTTCCCGAAATATAACTTCCACTAGCTCTTATA--TTACTA 48473
||| || || |||| || || || | ||| ||| ||| | || | ||| |
Sbjct 17606 ACCGTTCGAAGTACCGTTAGTACCAGCAATGTAAGAGCCAGTGGCACGAATACGGTGGAC 17665
Query 48474 ATTGAAATACCTATACCACCTGCCATTTTAGATATTAGAGCACACCGTTTAAGGGTATCA 48533
|||| | ||| ||||| || ||||| || || || | ||||| || ||||||||
Sbjct 17666 ATTG--AGACCGATACCGCCAGCCATCTTGGAAATCATGGCACAAGTCTTGAGGGTATCG 17723
Query 48534 TAAATTCCTTCTATACTATCATCTATCATATTTAATAGAAAACAACTAGACATTTGCGGA 48593
||||| || || || || |||||| |||| | | ||| || || ||||| || |
Sbjct 17724 TAAATGCCCTCGATGCTGTCATCTTTCATGTCGACTAGGAAGCACGAAGACAACTGAGCC 17783
Query 48594 TGACAAGTTCCTGAATTAAATAATGTTGGAGATGCATGAATAAACCATTTCTCTGATAAC 48653
|| || || | |||||| | || || ||||| ||| | || | || || |
Sbjct 17784 TGGGGGGTACCAGCATTAAAGAGCGTAGGTGATGCGTGAGTGAAGAACTTGCTGGACATA 17843
Query 48654 AATTTATATGTTTCAATAACA-----GAATCTAT-ATCCCATTGATGTATACCTATAGAT 48707
|| || || ||||||| ||| || | | | | |||| ||||| | ||
Sbjct 17844 AAGTTGTAGGTTTCAAGCACACGTTCGACTTTGTCACCCCA------AATACCCACAGCA 17897
Query 48708 ACACGCATTAACATATATTGAGGTCTTTCAACAATTTTGTTATTTATTTTCAAAAGATAT 48767
|||||||||| ||| | || || | ||||||||| || || | ||||| || ||
Sbjct 17898 ACACGCATTATCATGTGCTGGGGACGTTCAACAATCTTACCATCGAGTTTCAGTAGGTAA 17957
Query 48768 GATTTTTCCAATGTTTTAAAACCAAAATAGTTGTA 48802
|| || | || ||||| ||||| || | |||
Sbjct 17958 GAACGCTCAAGAGTCTTAAAGCCAAAGTACTGGTA 17992
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 562098927964200
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |