Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceratocystis_20albifundus_20[genbank_20GCA_5F000813685.1_202015-01- 02] 1,405 sequences; 26,875,327 total letters Query= NC_019491.1 Length=291144 Score E Sequences producing significant alignments: (Bits) Value seq431 196 9e-45 seq539 178 2e-39 >seq431 Length=155802 Score = 196 bits (216), Expect = 9e-45 Identities = 557/849 (66%), Gaps = 24/849 (3%) Strand=Plus/Minus Query 47839 CTGGTAGTCCCCCACTCTATTCTCAAAGAAGTTTGTCTTCCCCTCCAACGAGATGTTCTC 47898 |||||| || || || | |||||||||||||| ||||| || | | |||||||||||| Sbjct 44479 CTGGTAATCACCGACACGCTTCTCAAAGAAGTTAGTCTTGCCGCCGAGCGAGATGTTCTC 44420 Query 47899 CATGAAGAGGAAGGGGTTGGGTGTGTTA---TACACCCGTGTCAGGCCCATCTGTTCCAG 47955 ||||||| ||||||||| |||| | |||||| | ||| | | || Sbjct 44419 CATGAAGTCGAAGGGGTT---TGTGGCACGGTACACCTTTTCGTTGCCTAGAGCAACAAG 44363 Query 47956 CAGGTGATCCGCGACGTACTCGATGTATTTTGACATGAGGGTGATGTTCATGCCTATGAG 48015 |||| | ||||| || |||| ||||| | ||| || | |||||| |||| || Sbjct 44362 CAGGCGGTCCGCAACAAACTCAATGTACTGCTTCATCAGATCGGCGTTCATTCCTAGCAG 44303 Query 48016 GGACACGGGCAAAGCCTTTGTGAGAAACTCCTTCTCTATCTGCACGGCTTCCCCCACAAT 48075 ||| | ||||| || || ||||||||||| ||| ||||| || | || Sbjct 44302 ACCGCAGGGAAGAGCCTCGGTCAGGAACTCCTTCTCGATCACAACGGCATCAGTGATGAT 44243 Query 48076 CTGCTTAACGCGGGACT--CTGAGG-GTTTGTTGCGCAGGTGCTTGGCATAGAGCATGCA 48132 || | || || || ||| || | ||||| |||||| | | |||| ||| Sbjct 44242 CTTTTGCACTAGGTCCTTGCTGGGGCGGTTGTTT---AGGTGCGAGA---ACAGCAGGCA 44189 Query 48133 GGCAAAGTCCCTGTGCAAGCCTTCGTCCCGGCTGATGAGCACGTTGGAGAAGCAGAGACC 48192 |||||||| |||||| ||| ||||| || |||||| |||| |||||| ||||| Sbjct 44188 AGCAAAGTCGGTGTGCAGGCCCTCGTCACGAGAAATGAGCTCGTTTGAGAAGGTCAGACC 44129 Query 48193 AGGCATGACCCCCCTCTGTTTGAGCCAGAAAATTGCCGCGAAAGAGCCAGAGAAGAAGAT 48252 |||||||| || | || |||||||| || | ||||| | || ||||| ||||| Sbjct 44128 AGGCATGAGACCACGCTTGCGCAGCCAGAAGATGGAGGCGAAGGCACCCGAGAAAAAGAT 44069 Query 48253 GCCCTCCACTGCCGCGAACGCGGTGAGCCTCTCTCCGAAAGAAGCGTTCTTGTCTGAGAT 48312 |||||| || || || || || || | || | || | || | |||||| | ||| Sbjct 44068 GCCCTCGACAGCAGCAAAGGCAACTAGGCGCTGGGCAAACGTAGACTCCTTGTCGGTGAT 44009 Query 48313 CCAGGAAAGCGCCCAGTCTGCCTTCTTCTTGATGCATGGCATCGTCTCTATGGCCCGGAA 48372 ||| || |||||||| ||||| |||||| || || || || ||||| ||| Sbjct 44008 CCACTTCAGAGCCCAGTCGGCCTTGCGACGGATGCAGGGAATAGTGTCAATGGCATTGAA 43949 Query 48373 GAGCTTCTTGCACTCACCTGCGTCCGCAACATAGGT---AGTGAGCAGCTTTGCGTACAT 48429 || | ||| || | ||| | ||||| | | |||||| | || | Sbjct 43948 TAGGTATGTGCGCTGCGAGGGCTCCTTGATGTAGGTGTCAATTAGCAGC---GAATAGGT 43892 Query 48430 CTCAGAGTGCACATTCTCTATAGCGATCTGGAACCCGTAGAAGGCCCTGGCCTCAAACAC 48489 ||||| || | || || || ||||||||| ||||||||| || |||||| | Sbjct 43891 TTCAGAATGGATGTTTTCCATCATGATCTGGAAACCGTAGAAGCACCGGGCCTCGGGAAT 43832 Query 48490 CTGCACTTCTGTGGAGAATCTCTCCAGCAGATTCTCATTGACTATCCCATCTGAAGCAGC 48549 |||||| || ||||| | ||| | || || || ||||| || ||||| || ||||| Sbjct 43831 CTGCACCTCGCCTGAGAAGCGCTCAACGAGGTTTTCGTTGACGATGCCATCAGAGGCAGC 43772 Query 48550 AAAGAAGGCAAGGACATGTTTAAGGAAATGGCGCTCGTTGTGGGTGAGA---GCATTCCA 48606 ||||||||| || | || | ||| | |||||| | | | ||| ||||| Sbjct 43771 AAAGAAGGCGAGAATGTGGGAGATGAAGTACTGCTCGTCCTTGTTCAGACGGTTGTTCCA 43712 Query 48607 GCCCTGTACGTCTTTGCCCAGGTCCACTTCTTCCACAGTCCAGAAGGACGCGAGTGCTTT 48666 | | || | || ||| || || | ||||| ||||||||||||| || || || Sbjct 43711 GTCGTGGAGATCCTTGGAGAGATCAATCTCTTCAGCAGTCCAGAAGGAAGCCTCGGCCTT 43652 Query 48667 TTTGTACAT 48675 |||||||| Sbjct 43651 CTTGTACAT 43643 >seq539 Length=40911 Score = 178 bits (196), Expect = 2e-39 Identities = 817/1278 (64%), Gaps = 51/1278 (4%) Strand=Plus/Plus Query 212907 GGGTTGACTATCTGGAAGTCACCTGAGAGCACCCTCCTCTGGTAAAAGTTTGAAGTGTAG 212966 |||||||| | |||||| || || | || || | | |||||| | ||| || |||||| Sbjct 16500 GGGTTGACCACCTGGAACTCGCCAGCAAGAACGCGGCGCTGGTAGATGTTGGATGTGTAG 16559 Query 212967 GGCTCGATGCTCTCGTTGTTCCCCAGAATCTGTGCAGTGCTGGCTGTGGGCATGGGAGCC 213026 || |||| || ||| ||||| ||||||||||| | ||||||||||| |||||||| || Sbjct 16560 GGTTCGAAGCACTCATTGTTGCCCAGAATCTGCGATGTGCTGGCTGTAGGCATGGGTGCA 16619 Query 213027 ACCAGGAGACTGTTCCTCACTCCGTGCTCGCCGATGAGGCGCCGAAGCTCTGCCCAGTCC 213086 ||||| ||| || | || || |||| || | || | ||||||| Sbjct 16620 ACCAGAAGAGAATTGCGTACACCATGCTGTTTAATCTTCTCCTTCAGAGAAGTCCAGTCC 16679 Query 213087 CATCTGCCAGACAGGTC-CTCGTCCTTCACGTTCCACATGTCAAACTGCAAGATGCCTTT 213145 | ||||||| || | |||| | |||||| |||||||||||||| |||| Sbjct 16680 C---------ACAGGTCACTAG-GAGTCACATCCCACATATCAAACTGCAAGATACCTTG 16729 Query 213146 GCTCACGGGGCTGCCCTGGTAAGAGGAGTAGGGGCCATGCTCCTTGGCCAGCTCGCAGGA 213205 | || ||| |||| || | ||||| | || | | || ||| | || || Sbjct 16730 GGAGACAGGGGAACCCTCATAGGTTGAGTAAGTACCCTCCGTCTGGGCGATTTCCATTGA 16789 Query 213206 CGCCTGCAGGGCAGCGTAGTAGATGGTTTCAAATATCTCCCTGTTGAGCTTCTTGGCCTC 213265 || || || |||| ||||||||||||||| |||| |||| |||| || || Sbjct 16790 AGCAGTTAGTGCGGCGTGGTAGATGGTTTCAAAAATCTGTTTGTTAAGCTGGCGTGCTTC 16849 Query 213266 TGGGGACGTGAAGGGCATCATCATGCGTTGGAACACATCAGCCAGCCCCTGGACCCCGAT 213325 ||||| ||| ||||| | |||| ||||||||| ||||| || || | Sbjct 16850 GGGGGATTCGAAAGGCATGCGGAGAGCAAGGAAAGCATCAGCCAAGCCCTGTACACCAAC 16909 Query 213326 GCCGATGGGTCTGTGTCTCAGGTTAGACTTG-GAGCACTCCTCCAAGGGGTAAAAGTTGC 213384 || ||||| | ||| | || ||| ||| |||| |||| | ||||| || Sbjct 16910 ACCAATGGGACGGTGGCGCATGTTGCTGTTGTGAGC-TTCCTGGACAGGGTAGTGATTCA 16968 Query 213385 AGTCGATGATCTTGTTGAGGTTGCGGGTGGCCACTTTGGTGACATGGGCCAGGTACTCGT 213444 || ||||| ||| |||||||| | |||| ||||| | | ||| | Sbjct 16969 CATCAATGATGCGGTTTAGGTTGCGAACAACAACTTGAGTGACTT----CGTGTA--GCT 17022 Query 213445 GATTGAACACGTAGCCCCC------GTCCTGCACAAACTCAGGCAGGGC----GATGCTG 213494 || || | || | || || | ||| || ||| ||||| |||||| Sbjct 17023 TTTTAAAGTCATACTCACCCTTGTTGTAGTCCACGAAGGAAGGAAGGGCCAGAGATGCT- 17081 Query 213495 GCCAGGTTGCAAACGGCCACCTCCTGAGAGTCTGTGTACTCCATGATCTCGGTGCACAGG 213554 |||||||| || || ||||| | || | | ||||| || ||||| ||||||||| Sbjct 17082 ---AGGTTGCACACAGCAACCTCGTCAGGGGCACAATACTCGATAATCTCAGTGCACAGG 17138 Query 213555 TTGCTGCATCGGATGGTGCCCAGGTTCTGGTGGTTTGACTTTGCGTTGGCAGAATCCTTG 213614 || || |||||||| || || || | || || ||| |||| | || ||| Sbjct 17139 TTTGAGCTGCGGATGGTACCTAGATTTTTCTGATTGCTCTTGCGGTTGCAATGGTCTTTG 17198 Query 213615 TAGAGCATGTAGGGGGACCCGGTCTCTAGCTGGGACACCAGTATCTGGC--TCCAGAGGT 213672 || |||||| | ||| || ||||| ||||| | |||| | |||| ||| || | Sbjct 17199 TAAAGCATGAAAGGGTTGCCAGTCTCAGTCTGGGCCTCCAGAA--TGGCATACCACAGCT 17256 Query 213673 ACCTGGCCTTGACCACCCGCCTGACAGCTCCGGGCGTAGCCTCGTACTGTTCGTAGAGCT 213732 | |||||||| || ||| ||| || | | | |||||||| ||| || || Sbjct 17257 TCTGGGCCTTGA-CAACCGTGCGACCGCGACCCTCCT--TCTCGTACTTTTCATACAGAG 17313 Query 213733 CGTTGAATTCGTGGCCCCAG-ACCCTGTCCAGTCCCGGACAGGATGCGGGACACATGAGG 213791 | | || || | ||| || | | | ||| || || || ||| |||||||| Sbjct 17314 CCTCAAACTCTTCGCCATAGCAATCCG-CCAAGCCGGGGCATTCATTGGGGCACATGAGA 17372 Query 213792 CTCCAGTCC-CCGTCATCTCTGACTCTCTGCATGAACAGGTCCGGGACCCACAGCGCGGT 213850 |||||||| | | |||| || | || |||||||| ||| || |||||| || Sbjct 17373 GTCCAGTCCTCATTTTTCTC-AACACGCTTCATGAACAAGTCGCAGATCCACAGGGCCAA 17431 Query 213851 GAACAGGTCCCTGGTCCTCCTCTCGTCCACTCCAGAGTTTTTGCGCAGATCTAGAAAGTC 213910 ||| ||||| | | | || ||| ||| ||| ||||||| || || || || Sbjct 17432 GAATAGGTCACGAGCACGGACTTCTTCCTTTCCGTGGTTCTTGCGCAAGTCGAGGAACTC 17491 Query 213911 AAAGATGTCCGCGTGCCACGGCTCCATGTAGATGGCAAAGGCGCCCGGCCTCTTG---CC 213967 |||| || || ||||| ||||| | ||| ||||||||||| || || | |||| || Sbjct 17492 GAAGACATCAGCATGCCATGGCTCGAGGTAAATGGCAAAGGCTCCAGGTCGCTTGTTTCC 17551 Query 213968 GCCCTGGTCCACCAGCCTGGCCACCATGTTGAAGATGCGCAGGACGGGTACCAGCCCGTT 214027 |||||||| || | ||| ||||||| | || || | ||| || | ||||| Sbjct 17552 ACCCTGGTCAACATAACGGGCAGTGTTGTTGAAAACACGTAGCATGGGAACGATACCGTT 17611 Query 214028 GGACTGTCCGTTGGTTCCCGCTATATACGAGCCGGAGGCCC--TCAGGTTGCTCATGGAG 214085 || ||||| || || || || || ||||| | ||| | | | || ||| ||| Sbjct 17612 CGAAGTACCGTTAGTACCAGCAATGTAAGAGCCAGTGGCACGAATACGGTGGACATTGAG 17671 Query 214086 AGCCCTATGCCACCGGCGTACTTGGAGATCATGGCGCAGCGCCTCACAGTCTCCATGATG 214145 | || || || || || |||||| |||||||| || | | | || || ||| Sbjct 17672 A--CCGATACCGCCAGCCATCTTGGAAATCATGGCACAAGTCTTGAGGGTATCGTAAATG 17729 Query 214146 CCGGCCATGCTGTCATCT 214163 || | |||||||||||| Sbjct 17730 CCCTCGATGCTGTCATCT 17747 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 931516439955200