Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceratocystis_20albifundus_20[genbank_20GCA_5F000813685.1_202015-01- 02] 1,405 sequences; 26,875,327 total letters Query= NC_019495.1 Length=290304 Score E Sequences producing significant alignments: (Bits) Value seq431 230 4e-55 seq539 100 5e-16 >seq431 Length=155802 Score = 230 bits (254), Expect = 4e-55 Identities = 574/863 (67%), Gaps = 36/863 (4%) Strand=Plus/Plus Query 25477 ATATGGGAGATGTACAAGAAGGCTCAAAACTCAAACTGGACCGCCGAAGAGATTGATCTG 25536 || ||| |||||||||||||||| | || |||||| || |||||||||||||| Sbjct 43634 ATCTGGCAGATGTACAAGAAGGCCGAGGCTTCCTTCTGGACTGCTGAAGAGATTGATCTC 43693 Query 25537 GCCAAGGACATGGACGGCTGGTACGC---TCTATCCAAAGACGAGCAGCATTTTCTCAAG 25593 ||||||| | ||| |||| || ||| ||| ||||||||| | || || Sbjct 43694 TCCAAGGATCTCCACGACTGGAACAACCGTCTGAACAAGGACGAGCAGTACTTCATCTCC 43753 Query 25594 TACGTGTTGGCATTCTTTGCAGCCTCTGATGGTATAGTGAACGAGAATCTGTGCGAGAGA 25653 || | | || |||||||| ||||||||||| || || ||||| || || ||| | Sbjct 43754 CACATTCTCGCCTTCTTTGCTGCCTCTGATGGCATCGTCAACGAAAACCTCGTTGAGCGC 43813 Query 25654 TTCACCAGGGAAGTGCAGTACGTGGAGGCCAAGTGTTTCTACGGTTTCCAGATGGCCATC 25713 ||| | | || |||||| |||||| ||| ||||||||||||||||| || Sbjct 43814 TTCTCAGGCGAGGTGCAGATTCCCGAGGCCCGGTGCTTCTACGGTTTCCAGATCATGATG 43873 Query 25714 GAAAATGTGCACTCTGAGGTGTATGCCAAGCTTCTGATG---ACGTACATTACAGA--CG 25768 ||||| | || ||||| ||| | ||| || || || ||||| | || | Sbjct 43874 GAAAACATCCATTCTGAAACCTATTC---GCTGCTAATTGACACCTACATCAAGGAGCCC 43930 Query 25769 TCGCCGAGAGAGATCGGCTGTTTGGTGCCATCGAGCAC-ATACCCAGCATCAAGAGGAAG 25827 |||| | | | || || || |||||| || ||| || ||| ||||| | ||| Sbjct 43931 TCGCAGCGC-ACATAC-CTATTCAATGCCATTGA-CACTATTCCCTGCATCCGTCGCAAG 43987 Query 25828 GCGCGGTGGGCCATGAAGTGGATCAACAGCCAGAGCGCTACGTTTGGCGAGCGGCTGGTA 25887 || ||||| |||||||||||| | | || ||||||||| | |||| || || Sbjct 43988 GCCGACTGGGCTCTGAAGTGGATCACCGACAAGGAGTCTACGTTTGCCCAGCGCCTAGTT 44047 Query 25888 GCCTTTGCTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTTTGCGGCCATCTTCTGGCT- 25946 |||||||||||||| ||||||||||||||| ||| | || || ||||||||||||| Sbjct 44048 GCCTTTGCTGCTGTCGAGGGCATCTTTTTCTCGGGTGCCTTCGCCTCCATCTTCTGGCTG 44107 Query 25947 --CAAGCAGAAGGGGAC-CATGCCCGGGCTGTACTTTTCCAACGAGCTCATCAGCAGGGA 26003 ||||| | || | |||||| || ||| ||| || ||||||||||| | || Sbjct 44108 CGCAAGC----GTGGTCTCATGCCTGGTCTGACCTTCTCAAACGAGCTCATTTCTCGTGA 44163 Query 26004 CGAGGGTCTCCACAGAGATTTTGCCTGCCTGCTCTACACGGGCCACTTGCTCCACAAACC 26063 |||||| || |||| || ||||| |||||||| | | || ||| || || |||| Sbjct 44164 CGAGGGCCTGCACACCGACTTTGCTTGCCTGCTGTTCTCG---CAC---CTAAAC-AACC 44216 Query 26064 TTCTCA--AGAGACC--GTCTACAGTATCATCAAAGAGGCTGTGGAGATCGAGAAGGAGT 26119 | || | |||| || | | ||||||| || || || | |||||||||||||| Sbjct 44217 GCCCCAGCAAGGACCTAGTGCAAAAGATCATCACTGATGCCGTTGTGATCGAGAAGGAGT 44276 Query 26120 TTCNNNNNNNNNNNNNNNNNNNNNNNNNNNTGGGCATGAACAACAGACTCATGAGCCAAT 26179 | | | || |||||| | || |||| || | Sbjct 44277 TCCTGACCGAGGCTCTTCCCTGCGGTCTGCTAGGAATGAACGCCGATCTGATGAAGCAGT 44336 Query 26180 ACATTGAGTATGTGGCCGACCATCTGC-TGTGCCAGCTGGGACTCGCCAGACTCTACAGT 26238 ||||||||| ||| || |||| |||| ||| | || || || | | ||| || Sbjct 44337 ACATTGAGTTTGTTGCGGACCGCCTGCTTGTTGC-TCTAGGCAACGAAAAGGTGTACCGT 44395 Query 26239 ACGCCTAACCCGTTCGACTTTATGGAAAACATATCGTTGGAAGGGAAGACCAACTTCTTT 26298 | | ||||| |||||||| ||||| ||||| ||| | | || ||||| ||||||||| Sbjct 44396 GCCACAAACCCCTTCGACTTCATGGAGAACATCTCGCTCGGCGGCAAGACTAACTTCTTT 44455 Query 26299 GAAAAGAGGGTCGGCGACTATCA 26321 || ||| | ||||| || || || Sbjct 44456 GAGAAGCGTGTCGGTGATTACCA 44478 >seq539 Length=40911 Score = 100 bits (110), Expect = 5e-16 Identities = 103/135 (76%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 221116 GTTCACCACTTGGAAATCTCCCGAGAGCACCCTCCTCTGGTACAGGTTAGAAGTGAACGG 221175 ||| ||||| ||||| || || | || || | | |||||| | ||| || ||| | || Sbjct 16502 GTTGACCACCTGGAACTCGCCAGCAAGAACGCGGCGCTGGTAGATGTTGGATGTGTAGGG 16561 Query 221176 TTCGATGCTCTCGTTGTTGCCCAGGATCTGAGCCGTGCTGGCGGTGGGCATGGGTGCCAC 221235 ||||| || ||| ||||||||||| ||||| | |||||||| || ||||||||||| || Sbjct 16562 TTCGAAGCACTCATTGTTGCCCAGAATCTGCGATGTGCTGGCTGTAGGCATGGGTGCAAC 16621 Query 221236 CAGCAGACTGTTGCG 221250 ||| ||| ||||| Sbjct 16622 CAGAAGAGAATTGCG 16636 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 928828487163200