Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ceratocystis_20albifundus_20[genbank_20GCA_5F000813685.1_202015-01-
02] 1,405 sequences; 26,875,327 total letters
Query= NC_019495.1
Length=290304
Score E
Sequences producing significant alignments: (Bits) Value
seq431 230 4e-55
seq539 100 5e-16
>seq431
Length=155802
Score = 230 bits (254), Expect = 4e-55
Identities = 574/863 (67%), Gaps = 36/863 (4%)
Strand=Plus/Plus
Query 25477 ATATGGGAGATGTACAAGAAGGCTCAAAACTCAAACTGGACCGCCGAAGAGATTGATCTG 25536
|| ||| |||||||||||||||| | || |||||| || ||||||||||||||
Sbjct 43634 ATCTGGCAGATGTACAAGAAGGCCGAGGCTTCCTTCTGGACTGCTGAAGAGATTGATCTC 43693
Query 25537 GCCAAGGACATGGACGGCTGGTACGC---TCTATCCAAAGACGAGCAGCATTTTCTCAAG 25593
||||||| | ||| |||| || ||| ||| ||||||||| | || ||
Sbjct 43694 TCCAAGGATCTCCACGACTGGAACAACCGTCTGAACAAGGACGAGCAGTACTTCATCTCC 43753
Query 25594 TACGTGTTGGCATTCTTTGCAGCCTCTGATGGTATAGTGAACGAGAATCTGTGCGAGAGA 25653
|| | | || |||||||| ||||||||||| || || ||||| || || ||| |
Sbjct 43754 CACATTCTCGCCTTCTTTGCTGCCTCTGATGGCATCGTCAACGAAAACCTCGTTGAGCGC 43813
Query 25654 TTCACCAGGGAAGTGCAGTACGTGGAGGCCAAGTGTTTCTACGGTTTCCAGATGGCCATC 25713
||| | | || |||||| |||||| ||| ||||||||||||||||| ||
Sbjct 43814 TTCTCAGGCGAGGTGCAGATTCCCGAGGCCCGGTGCTTCTACGGTTTCCAGATCATGATG 43873
Query 25714 GAAAATGTGCACTCTGAGGTGTATGCCAAGCTTCTGATG---ACGTACATTACAGA--CG 25768
||||| | || ||||| ||| | ||| || || || ||||| | || |
Sbjct 43874 GAAAACATCCATTCTGAAACCTATTC---GCTGCTAATTGACACCTACATCAAGGAGCCC 43930
Query 25769 TCGCCGAGAGAGATCGGCTGTTTGGTGCCATCGAGCAC-ATACCCAGCATCAAGAGGAAG 25827
|||| | | | || || || |||||| || ||| || ||| ||||| | |||
Sbjct 43931 TCGCAGCGC-ACATAC-CTATTCAATGCCATTGA-CACTATTCCCTGCATCCGTCGCAAG 43987
Query 25828 GCGCGGTGGGCCATGAAGTGGATCAACAGCCAGAGCGCTACGTTTGGCGAGCGGCTGGTA 25887
|| ||||| |||||||||||| | | || ||||||||| | |||| || ||
Sbjct 43988 GCCGACTGGGCTCTGAAGTGGATCACCGACAAGGAGTCTACGTTTGCCCAGCGCCTAGTT 44047
Query 25888 GCCTTTGCTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTTTGCGGCCATCTTCTGGCT- 25946
|||||||||||||| ||||||||||||||| ||| | || || |||||||||||||
Sbjct 44048 GCCTTTGCTGCTGTCGAGGGCATCTTTTTCTCGGGTGCCTTCGCCTCCATCTTCTGGCTG 44107
Query 25947 --CAAGCAGAAGGGGAC-CATGCCCGGGCTGTACTTTTCCAACGAGCTCATCAGCAGGGA 26003
||||| | || | |||||| || ||| ||| || ||||||||||| | ||
Sbjct 44108 CGCAAGC----GTGGTCTCATGCCTGGTCTGACCTTCTCAAACGAGCTCATTTCTCGTGA 44163
Query 26004 CGAGGGTCTCCACAGAGATTTTGCCTGCCTGCTCTACACGGGCCACTTGCTCCACAAACC 26063
|||||| || |||| || ||||| |||||||| | | || ||| || || ||||
Sbjct 44164 CGAGGGCCTGCACACCGACTTTGCTTGCCTGCTGTTCTCG---CAC---CTAAAC-AACC 44216
Query 26064 TTCTCA--AGAGACC--GTCTACAGTATCATCAAAGAGGCTGTGGAGATCGAGAAGGAGT 26119
| || | |||| || | | ||||||| || || || | ||||||||||||||
Sbjct 44217 GCCCCAGCAAGGACCTAGTGCAAAAGATCATCACTGATGCCGTTGTGATCGAGAAGGAGT 44276
Query 26120 TTCNNNNNNNNNNNNNNNNNNNNNNNNNNNTGGGCATGAACAACAGACTCATGAGCCAAT 26179
| | | || |||||| | || |||| || |
Sbjct 44277 TCCTGACCGAGGCTCTTCCCTGCGGTCTGCTAGGAATGAACGCCGATCTGATGAAGCAGT 44336
Query 26180 ACATTGAGTATGTGGCCGACCATCTGC-TGTGCCAGCTGGGACTCGCCAGACTCTACAGT 26238
||||||||| ||| || |||| |||| ||| | || || || | | ||| ||
Sbjct 44337 ACATTGAGTTTGTTGCGGACCGCCTGCTTGTTGC-TCTAGGCAACGAAAAGGTGTACCGT 44395
Query 26239 ACGCCTAACCCGTTCGACTTTATGGAAAACATATCGTTGGAAGGGAAGACCAACTTCTTT 26298
| | ||||| |||||||| ||||| ||||| ||| | | || ||||| |||||||||
Sbjct 44396 GCCACAAACCCCTTCGACTTCATGGAGAACATCTCGCTCGGCGGCAAGACTAACTTCTTT 44455
Query 26299 GAAAAGAGGGTCGGCGACTATCA 26321
|| ||| | ||||| || || ||
Sbjct 44456 GAGAAGCGTGTCGGTGATTACCA 44478
>seq539
Length=40911
Score = 100 bits (110), Expect = 5e-16
Identities = 103/135 (76%), Gaps = 0/135 (0%)
Strand=Plus/Plus
Query 221116 GTTCACCACTTGGAAATCTCCCGAGAGCACCCTCCTCTGGTACAGGTTAGAAGTGAACGG 221175
||| ||||| ||||| || || | || || | | |||||| | ||| || ||| | ||
Sbjct 16502 GTTGACCACCTGGAACTCGCCAGCAAGAACGCGGCGCTGGTAGATGTTGGATGTGTAGGG 16561
Query 221176 TTCGATGCTCTCGTTGTTGCCCAGGATCTGAGCCGTGCTGGCGGTGGGCATGGGTGCCAC 221235
||||| || ||| ||||||||||| ||||| | |||||||| || ||||||||||| ||
Sbjct 16562 TTCGAAGCACTCATTGTTGCCCAGAATCTGCGATGTGCTGGCTGTAGGCATGGGTGCAAC 16621
Query 221236 CAGCAGACTGTTGCG 221250
||| ||| |||||
Sbjct 16622 CAGAAGAGAATTGCG 16636
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 928828487163200
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |