Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceratocystis_20albifundus_20[genbank_20GCA_5F000813685.1_202015-01- 02] 1,405 sequences; 26,875,327 total letters Query= NC_020845.1 Length=180977 Score E Sequences producing significant alignments: (Bits) Value seq1152 114 1e-20 >seq1152 Length=79426 Score = 114 bits (126), Expect = 1e-20 Identities = 331/503 (66%), Gaps = 11/503 (2%) Strand=Plus/Minus Query 138169 TGAGATGTTTTGCTACACCAATAGGACCTACGCCAGGACCTCCACCTCCATGTGGAATAC 138228 |||||||||| |||| ||||| || || ||||| || ||||| ||||| ||||| | Sbjct 25731 TGAGATGTTTCTTGACACAGATAGGGCCAACACCAGGGCCACCACCGCCATGAGGAATGC 25672 Query 138229 AGAATGTCTTATGTAAATTTAGATGACATACATCTGCACCATAGTCACATGGTTTTGCTA 138288 |||||||||| |||| |||| || || ||||| || ||| |||| || | | Sbjct 25671 AGAATGTCTTGTGTAGGTTTAAGTGGCACACATCAGCGCCAATCTCACCAGGAGAGGTAA 25612 Query 138289 GACCTACCTGTGCATTTAGATTTGCACCATCGAGATATACCTGACCACCATTGTCATGAA 138348 |||| | ||| ||||| | || || || || | || ||||| ||||| | |||| | Sbjct 25611 GACCAATCTGGGCATTCATGTTGGCGCCGTCCATGTACACCTGGCCACCGTAAGCATGCA 25552 Query 138349 CGATCTTACATATCTGTCTGATGTTTGTTTCAAATACACCATGAGTCGATGGATATGTAA 138408 | | | ||| || || || || | |||||| | |||| ||| || || || | Sbjct 25551 CAAGATCACAGGCCTTTCGGACGTCAGGTTCAAAGATACCAAAAGTACTAGGGTAAGTGA 25492 Query 138409 TCATAATACATGAGAGTTCAAATGTATTCATGATTG---CTTTCTTCTCTAGATCTTTGA 138465 ||||||| || |||||| | || | | ||| ||| | |||||||| || Sbjct 25491 TCATAATGCAGCCAAGTTCATTAGCATACTT--TTGGCACTTGGCT-TCTAGATCAGCGA 25435 Query 138466 TGTCTATGTTGCCATCA---TCATCACACTTGACACCTACAACTTTCATTCCTGCCATGA 138522 | || | || ||| | ||||||||||| | ||||| ||| ||||||||| Sbjct 25434 TATCCAAATTTCCAGTAGTGGTATCACACTTGATAGGAACAACACGCATACCTGCCATGG 25375 Query 138523 CTGCACTAGCAGGATTAGTTCCATGTGCTGACTCTGGTATCAGACATACATTTCTTTTAT 138582 | || ||||| || |||||||| || || | || |||| ||| | | | ||| | Sbjct 25374 CAGCCGAGGCAGGGTTGGTTCCATGAGCAGAAACAGGAATCAAACAGATGTCACGTTTCT 25315 Query 138583 CATCTCC-TGATCCTTGATGATATGCTTGGATTGCTAACAGTCCTGCATACTCACCCTGT 138641 |||| | |||| | || || ||||| || || || ||| |||| || || Sbjct 25314 TGCCTCCATTTTCCTCG-TGGTAGCGATGGATAGCACGAAGACCAGCAAACTCGCCTTGG 25256 Query 138642 GATCCTGCGTTAGGTTGTAATGA 138664 | || | |||||| ||||| || Sbjct 25255 GCACCAGAGTTAGGCTGTAACGA 25233 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 578988231340600