Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceratocystis_20albifundus_20[genbank_20GCA_5F000813685.1_202015-01- 02] 1,405 sequences; 26,875,327 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq686 113 1e-19 seq669 93.3 1e-13 >seq686 Length=112311 Score = 113 bits (124), Expect = 1e-19 Identities = 208/300 (69%), Gaps = 10/300 (3%) Strand=Plus/Minus Query 302572 TCTTCCATACTCTTGATTAAACGACGCTGAATATAACCAGTTGTAGATGTTTTTACAGCT 302631 ||||||| | ||| | || |||||| || || || |||||| | || || ||||| Sbjct 101147 TCTTCCAAAGCCTTAACTAGACGACGTTGGATGTAGCCAGTTTCTGCAGTCTTCACAGCA 101088 Query 302632 GTATCAATTAGACCAACACGACCACCCATAGCATGGAAGAATAGCTCTTCCGGTCGTA-- 302689 || ||||| ||||| ||||||| ||||||||||||| || | || | | ||| Sbjct 101087 GTGTCAATAAGACCTTCACGACCGGCCATAGCATGGAAAAAGAATTC-GCTAGGAGTAAG 101029 Query 302690 GCCCCCCAATAAAGGAGCTCTCAACGAAACCACGCGCCTCGGGCGAATCGTCGAACTTGG 302749 ||| | ||| | ||| ||||||| || ||||| || ||||| |||| ||| ||||| Sbjct 101028 GCCACGCAA-GTATGAGTTCTCAACAAACCCACGAGCTTCGGGGGAATAATCGTCCTTGG 100970 Query 302750 TAAAGTGTGGCAGGGTCCTGTTCTCATAGCCGTATGGGATACGCTTTCCATCAACGTTCT 302809 | || || || || |||| | | | | || | || ||||||||||| ||||| | | Sbjct 100969 TGAAATGAGGGAGAGTCCGATATTTAAACCCAAAAGGAATACGCTTTCCTTCAACAATTT 100910 Query 302810 GCTGTC---CCAGGCACGAAATCATCTGCGAAATATTTAAATCACTGCCCTTGGAGCCAG 302866 |||| | |||| || ||||||||||||| || | | |||||||| |||| Sbjct 100909 GCTGACCGACCAGAGCCG---TCATCTGCGAAATGTTGATAGTCGAACCCTTGGAACCAG 100853 >seq669 Length=28067 Score = 93.3 bits (102), Expect = 1e-13 Identities = 119/164 (73%), Gaps = 0/164 (0%) Strand=Plus/Plus Query 251407 ATAAGACCACACTTATTACACACATGGACGCTGTAAGCATCAGATGCGTCATATAGCCGA 251466 || |||||||| | | ||| | || || | | | ||||| || | ||| | | ||| Sbjct 15217 ATCAGACCACAAATCTCACAAATGTGCACTCGGAAGGCATCCGAAACCTCAAACAACCGC 15276 Query 251467 CCCTTGGTGAAGCGAGATGCACCGTGTGAAATCATACAATCACGCTCCATTTCACCGAAA 251526 |||| ||| | |||||| || | |||||||||||||||||||||||| |||||| Sbjct 15277 TCCTTCAAGAACGCTGCTGCACCATGAGCAATCATACAATCACGCTCCATTTCTCCGAAA 15336 Query 251527 CGAAGACCACCATCGCGAGCCCTACCCTCGGCAGGCTGACGAGT 251570 || | ||||||||| ||||| | ||| || | ||||| || || Sbjct 15337 CGCAAACCACCATCACGAGCACGACCTTCAACTGGCTGTCGCGT 15380 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1471791104983485