Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceratocystis_20albifundus_20[genbank_20GCA_5F000813685.1_202015-01- 02] 1,405 sequences; 26,875,327 total letters Query= NC_021858.1 Length=1908524 Score E Sequences producing significant alignments: (Bits) Value seq1030 150 2e-30 seq431 120 4e-21 seq593 116 5e-20 seq539 104 3e-16 >seq1030 Length=89652 Score = 150 bits (166), Expect = 2e-30 Identities = 272/394 (69%), Gaps = 8/394 (2%) Strand=Plus/Plus Query 18096 CTTTGGCGAGTCGCACGGGGCGGGCGTCGGCTGCATCATCGACGGCGTGCCGCCGTGCAT 18155 |||||| ||||||||||| || ||||||||||||||| ||| | ||||| || | Sbjct 82628 CTTTGGTGAGTCGCACGGCAAGGCCGTCGGCTGCATCATTGACAACCCACCGCCCGGCCT 82687 Query 18156 GCCACTGGCCGAGGCCGACATCCAGCCTCAGTTGGATCGGCGCCGACCGGGCCAGGGCGC 18215 | || |||| || ||||||||||||||| || ||| || |||| |||||| || | Sbjct 82688 TTCCCTAACCGAAGCTGACATCCAGCCTCAGCTGACTCGCCGGAGACCCGGCCAGAGCTC 82747 Query 18216 ACTTTCCACGCCGCGCAACGAGCCCGATCGCGTCATCATCCAGTCGGGCACGGAGAACGG 18275 || | || |||||||| || || || || | || | |||||| ||| ||| Sbjct 82748 GATTACAACACCGCGCAATGAAAAGGACCGTGTGACGATTCTCTCGGGCTGCGAGTTCGG 82807 Query 18276 CCTCACGCTCGGCTCGCCCGTCGGCCTCTTTGTGGCCAACCGCGACCAGCGGCC-CGTCG 18334 || ||| || ||| | ||| | | || || |||| ||||||||||| ||| | Sbjct 82808 CCGCACTCTAGGCACTCCCATTGCTCTGAGCGTTAACAACGAAGACCAGCGGCCTCGT-G 82866 Query 18335 ACT-----ATTCCGAC-ATGTGCAAGGTGCCGCGGCCCTCACACGCCGACTACACCTACA 18388 | | | | ||| ||| |||| || |||||||| || || || | ||| ||| Sbjct 82867 ATTACGGAAACCAGACTATGGACAAGTACCCCCGGCCCTCGCATGCTGATTTCACGTACC 82926 Query 18389 TGGCCAAGTACGGCATCAAGGCGTCGTCGGGCGGAGGCCGGTCGTCTGCCCGCGAGACCC 18448 ||| |||||| |||||||||| ||||| || || |||||| ||| || ||||| Sbjct 82927 TGGAAAAGTACAGCATCAAGGCATCGTCAGGAGGCGGCCGGAGTAGTGCACGTGAGACTA 82986 Query 18449 TCATGCGCGTCGCCGCCGGCGCGGTCGCCGAGAA 18482 | |||||| || ||||| ||||| || || || Sbjct 82987 TTGCGCGCGTGGCTGCCGGTGCGGTGGCTGAAAA 83020 >seq431 Length=155802 Score = 120 bits (132), Expect = 4e-21 Identities = 184/258 (71%), Gaps = 11/258 (4%) Strand=Plus/Minus Query 869210 AAGGCGAGGCCGGGCATGAGGCCGCGCTTCTTGAGCCAAAAGATGGCGCAGAAACTGCCC 869269 |||| || || |||||||| || ||||| ||||| ||||||| | ||| ||| Sbjct 44139 AAGGTCAGACCAGGCATGAGACCACGCTTGCGCAGCCAGAAGATGGAGGCGAAGGCACCC 44080 Query 869270 GAGAAAAAGATGCCCTCGACGGCGGCAAAGCCGATGAGCCGCTCGGCAAAGGTGTCGAGG 869329 |||||||||||||||||||| || |||||| | | || |||| |||||| || || Sbjct 44079 GAGAAAAAGATGCCCTCGACAGCAGCAAAGGCAACTAGGCGCTGGGCAAACGT----AG- 44025 Query 869330 CCCTCCTTGT---TGATCCACTTCATCGCCCAGTCGGCCTTTTTCCTCACCGACGGCACC 869386 |||||||| |||||||||||| |||||||||||||| | | | || | Sbjct 44024 -ACTCCTTGTCGGTGATCCACTTCAGAGCCCAGTCGGCCTTGCGACGGATGCAGGGAATA 43966 Query 869387 GTGTCGATGGCGCGAAAGAGGT-GGTCCTTTTCGGCCGGGTCCTTGACATAGGTGTCGAT 869445 ||||| ||||| || |||| || | | | | || ||||||| |||||||| || Sbjct 43965 GTGTCAATGGCATTGAATAGGTATGTGCGCTGC-GAGGGCTCCTTGATGTAGGTGTCAAT 43907 Query 869446 CAGGAGCGAATAGGTCTC 869463 || ||||||||||| || Sbjct 43906 TAGCAGCGAATAGGTTTC 43889 Score = 109 bits (120), Expect = 7e-18 Identities = 218/318 (69%), Gaps = 10/318 (3%) Strand=Plus/Minus Query 868691 GCCTTGGCGTACTCGCCCACGCGCCGCTCGAAAAAGTTGGTCTTGCCCTCGAGCGAGATC 868750 ||||| ||| || || || ||| ||| || ||||| |||||||| |||||||||| Sbjct 44484 GCCTTCTGGTAATCACCGACACGCTTCTCAAAGAAGTTAGTCTTGCCGCCGAGCGAGATG 44425 Query 868751 AACTCCATCCACGGGAACGGGTTGGGCGTCTTGTAGTGCTTTTCGCATCCGAGCGACGCG 868810 |||||| | ||| ||||| | | ||| ||||||| || || | | Sbjct 44424 TTCTCCATGAAGTCGAAGGGGTTTGTGGCACGGTACACCTTTTCGTTGCCTAGAGCAACA 44365 Query 868811 AGCAGGCGGTCGGCGACAAACTCGATGTACTGGCACATGAGGCCGGCGTTCATGCCGATG 868870 ||||||||||| || |||||||| |||||||| ||| || |||||||||| || | Sbjct 44364 AGCAGGCGGTCCGCAACAAACTCAATGTACTGCTTCATCAGATCGGCGTTCATTCCTAGC 44305 Query 868871 AGCGCCACCGGCAGCGACTCGCTCACAAACTCTTTCTCGATCTCGACGGCCTCGACGATG 868930 || | || || | |||| ||| ||||| ||||||||| | ||||| || |||| Sbjct 44304 AGACCGCAGGGAAGAGCCTCGGTCAGGAACTCCTTCTCGATCACAACGGCATCAGTGATG 44245 Query 868931 ATC---TGC-CTGGGCACGTCGGCCGAGG-GCTTGTTGACGAGCATCGTGTAGAGCAGGC 868985 ||| ||| || || | | || | || | ||||| | | | || | | ||||||| Sbjct 44244 ATCTTTTGCACTAGGTCCTT--GCTGGGGCGGTTGTTTAGGTG---CGAGAACAGCAGGC 44190 Query 868986 AGGCAAAGTCGCAGTGCA 869003 | ||||||||| ||||| Sbjct 44189 AAGCAAAGTCGGTGTGCA 44172 >seq593 Length=35253 Score = 116 bits (128), Expect = 5e-20 Identities = 90/107 (84%), Gaps = 0/107 (0%) Strand=Plus/Minus Query 1592186 GCCGCCAACTACCTCGACATCAAGCCTCTGCTCGATCTTGGGTGCAAGTCTGTGGCCAAC 1592245 ||| ||||||| || || |||||||| ||||||| |||| |||||| | || |||||| Sbjct 6346 GCCTCCAACTATCTTGATATCAAGCCCTTGCTCGACGTTGGCTGCAAGACCGTCGCCAAC 6287 Query 1592246 ATGATCAAGGGCAAGTCGCCCGAGGAGATCCGCAAGACCTTTAACAT 1592292 ||||||||||||||||| ||||| || |||||||||||||| || || Sbjct 6286 ATGATCAAGGGCAAGTCTCCCGAAGAAATCCGCAAGACCTTCAATAT 6240 >seq539 Length=40911 Score = 104 bits (114), Expect = 3e-16 Identities = 210/312 (67%), Gaps = 0/312 (0%) Strand=Plus/Plus Query 1630065 CTGGTCGACGTAGCGCGCCGTGTCGTTAAAGACGCGGAGCATGGGCACGAGGCCGTTGGA 1630124 |||||| || || || || |||| ||| || || || |||||||| |||| ||||| || Sbjct 17555 CTGGTCAACATAACGGGCAGTGTTGTTGAAAACACGTAGCATGGGAACGATACCGTTCGA 17614 Query 1630125 CTCGCCGTTGGTGCCCGCCACGTAGGCGCCGGCGGCGCGCACCTTGTGCGCGGCAAAGCC 1630184 ||||| || || || | ||| | ||| | ||| || | ||| | | || Sbjct 17615 AGTACCGTTAGTACCAGCAATGTAAGAGCCAGTGGCACGAATACGGTGGACATTGAGACC 17674 Query 1630185 GATGCCGCCGGCCGACTTGGAGATGAGCGCGCACTGTTTGAGCGTGTCGTAGATGCCCTC 1630244 ||| ||||| ||| |||||| || | || || ||||| || ||||| |||||||| Sbjct 17675 GATACCGCCAGCCATCTTGGAAATCATGGCACAAGTCTTGAGGGTATCGTAAATGCCCTC 17734 Query 1630245 GATCGAGTCGGCCTTCATGTCCACGAGAAAGCACGACGAGTTTTGCGGGTGCGCCGTGCC 1630304 ||| ||| | |||||||| || || |||||||| || || | || | || || Sbjct 17735 GATGCTGTCATCTTTCATGTCGACTAGGAAGCACGAAGACAACTGAGCCTGGGGGGTACC 17794 Query 1630305 GGCGTTGAAGAGCGTGGGCGTCGCCGCGGTGAACAACTGCCGCGACATGGCGTCGTAGGT 1630364 || || |||||||| || | || ||||| |||| | ||||| || |||||| Sbjct 17795 AGCATTAAAGAGCGTAGGTGATGCGTGAGTGAAGAACTTGCTGGACATAAAGTTGTAGGT 17854 Query 1630365 GGCGAGCACGCG 1630376 | ||||| || Sbjct 17855 TTCAAGCACACG 17866 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 6107023899120385