Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ceratocystis_20albifundus_20[genbank_20GCA_5F000813685.1_202015-01-
02] 1,405 sequences; 26,875,327 total letters
Query= NC_021858.1
Length=1908524
Score E
Sequences producing significant alignments: (Bits) Value
seq1030 150 2e-30
seq431 120 4e-21
seq593 116 5e-20
seq539 104 3e-16
>seq1030
Length=89652
Score = 150 bits (166), Expect = 2e-30
Identities = 272/394 (69%), Gaps = 8/394 (2%)
Strand=Plus/Plus
Query 18096 CTTTGGCGAGTCGCACGGGGCGGGCGTCGGCTGCATCATCGACGGCGTGCCGCCGTGCAT 18155
|||||| ||||||||||| || ||||||||||||||| ||| | ||||| || |
Sbjct 82628 CTTTGGTGAGTCGCACGGCAAGGCCGTCGGCTGCATCATTGACAACCCACCGCCCGGCCT 82687
Query 18156 GCCACTGGCCGAGGCCGACATCCAGCCTCAGTTGGATCGGCGCCGACCGGGCCAGGGCGC 18215
| || |||| || ||||||||||||||| || ||| || |||| |||||| || |
Sbjct 82688 TTCCCTAACCGAAGCTGACATCCAGCCTCAGCTGACTCGCCGGAGACCCGGCCAGAGCTC 82747
Query 18216 ACTTTCCACGCCGCGCAACGAGCCCGATCGCGTCATCATCCAGTCGGGCACGGAGAACGG 18275
|| | || |||||||| || || || || | || | |||||| ||| |||
Sbjct 82748 GATTACAACACCGCGCAATGAAAAGGACCGTGTGACGATTCTCTCGGGCTGCGAGTTCGG 82807
Query 18276 CCTCACGCTCGGCTCGCCCGTCGGCCTCTTTGTGGCCAACCGCGACCAGCGGCC-CGTCG 18334
|| ||| || ||| | ||| | | || || |||| ||||||||||| ||| |
Sbjct 82808 CCGCACTCTAGGCACTCCCATTGCTCTGAGCGTTAACAACGAAGACCAGCGGCCTCGT-G 82866
Query 18335 ACT-----ATTCCGAC-ATGTGCAAGGTGCCGCGGCCCTCACACGCCGACTACACCTACA 18388
| | | | ||| ||| |||| || |||||||| || || || | ||| |||
Sbjct 82867 ATTACGGAAACCAGACTATGGACAAGTACCCCCGGCCCTCGCATGCTGATTTCACGTACC 82926
Query 18389 TGGCCAAGTACGGCATCAAGGCGTCGTCGGGCGGAGGCCGGTCGTCTGCCCGCGAGACCC 18448
||| |||||| |||||||||| ||||| || || |||||| ||| || |||||
Sbjct 82927 TGGAAAAGTACAGCATCAAGGCATCGTCAGGAGGCGGCCGGAGTAGTGCACGTGAGACTA 82986
Query 18449 TCATGCGCGTCGCCGCCGGCGCGGTCGCCGAGAA 18482
| |||||| || ||||| ||||| || || ||
Sbjct 82987 TTGCGCGCGTGGCTGCCGGTGCGGTGGCTGAAAA 83020
>seq431
Length=155802
Score = 120 bits (132), Expect = 4e-21
Identities = 184/258 (71%), Gaps = 11/258 (4%)
Strand=Plus/Minus
Query 869210 AAGGCGAGGCCGGGCATGAGGCCGCGCTTCTTGAGCCAAAAGATGGCGCAGAAACTGCCC 869269
|||| || || |||||||| || ||||| ||||| ||||||| | ||| |||
Sbjct 44139 AAGGTCAGACCAGGCATGAGACCACGCTTGCGCAGCCAGAAGATGGAGGCGAAGGCACCC 44080
Query 869270 GAGAAAAAGATGCCCTCGACGGCGGCAAAGCCGATGAGCCGCTCGGCAAAGGTGTCGAGG 869329
|||||||||||||||||||| || |||||| | | || |||| |||||| || ||
Sbjct 44079 GAGAAAAAGATGCCCTCGACAGCAGCAAAGGCAACTAGGCGCTGGGCAAACGT----AG- 44025
Query 869330 CCCTCCTTGT---TGATCCACTTCATCGCCCAGTCGGCCTTTTTCCTCACCGACGGCACC 869386
|||||||| |||||||||||| |||||||||||||| | | | || |
Sbjct 44024 -ACTCCTTGTCGGTGATCCACTTCAGAGCCCAGTCGGCCTTGCGACGGATGCAGGGAATA 43966
Query 869387 GTGTCGATGGCGCGAAAGAGGT-GGTCCTTTTCGGCCGGGTCCTTGACATAGGTGTCGAT 869445
||||| ||||| || |||| || | | | | || ||||||| |||||||| ||
Sbjct 43965 GTGTCAATGGCATTGAATAGGTATGTGCGCTGC-GAGGGCTCCTTGATGTAGGTGTCAAT 43907
Query 869446 CAGGAGCGAATAGGTCTC 869463
|| ||||||||||| ||
Sbjct 43906 TAGCAGCGAATAGGTTTC 43889
Score = 109 bits (120), Expect = 7e-18
Identities = 218/318 (69%), Gaps = 10/318 (3%)
Strand=Plus/Minus
Query 868691 GCCTTGGCGTACTCGCCCACGCGCCGCTCGAAAAAGTTGGTCTTGCCCTCGAGCGAGATC 868750
||||| ||| || || || ||| ||| || ||||| |||||||| ||||||||||
Sbjct 44484 GCCTTCTGGTAATCACCGACACGCTTCTCAAAGAAGTTAGTCTTGCCGCCGAGCGAGATG 44425
Query 868751 AACTCCATCCACGGGAACGGGTTGGGCGTCTTGTAGTGCTTTTCGCATCCGAGCGACGCG 868810
|||||| | ||| ||||| | | ||| ||||||| || || | |
Sbjct 44424 TTCTCCATGAAGTCGAAGGGGTTTGTGGCACGGTACACCTTTTCGTTGCCTAGAGCAACA 44365
Query 868811 AGCAGGCGGTCGGCGACAAACTCGATGTACTGGCACATGAGGCCGGCGTTCATGCCGATG 868870
||||||||||| || |||||||| |||||||| ||| || |||||||||| || |
Sbjct 44364 AGCAGGCGGTCCGCAACAAACTCAATGTACTGCTTCATCAGATCGGCGTTCATTCCTAGC 44305
Query 868871 AGCGCCACCGGCAGCGACTCGCTCACAAACTCTTTCTCGATCTCGACGGCCTCGACGATG 868930
|| | || || | |||| ||| ||||| ||||||||| | ||||| || ||||
Sbjct 44304 AGACCGCAGGGAAGAGCCTCGGTCAGGAACTCCTTCTCGATCACAACGGCATCAGTGATG 44245
Query 868931 ATC---TGC-CTGGGCACGTCGGCCGAGG-GCTTGTTGACGAGCATCGTGTAGAGCAGGC 868985
||| ||| || || | | || | || | ||||| | | | || | | |||||||
Sbjct 44244 ATCTTTTGCACTAGGTCCTT--GCTGGGGCGGTTGTTTAGGTG---CGAGAACAGCAGGC 44190
Query 868986 AGGCAAAGTCGCAGTGCA 869003
| ||||||||| |||||
Sbjct 44189 AAGCAAAGTCGGTGTGCA 44172
>seq593
Length=35253
Score = 116 bits (128), Expect = 5e-20
Identities = 90/107 (84%), Gaps = 0/107 (0%)
Strand=Plus/Minus
Query 1592186 GCCGCCAACTACCTCGACATCAAGCCTCTGCTCGATCTTGGGTGCAAGTCTGTGGCCAAC 1592245
||| ||||||| || || |||||||| ||||||| |||| |||||| | || ||||||
Sbjct 6346 GCCTCCAACTATCTTGATATCAAGCCCTTGCTCGACGTTGGCTGCAAGACCGTCGCCAAC 6287
Query 1592246 ATGATCAAGGGCAAGTCGCCCGAGGAGATCCGCAAGACCTTTAACAT 1592292
||||||||||||||||| ||||| || |||||||||||||| || ||
Sbjct 6286 ATGATCAAGGGCAAGTCTCCCGAAGAAATCCGCAAGACCTTCAATAT 6240
>seq539
Length=40911
Score = 104 bits (114), Expect = 3e-16
Identities = 210/312 (67%), Gaps = 0/312 (0%)
Strand=Plus/Plus
Query 1630065 CTGGTCGACGTAGCGCGCCGTGTCGTTAAAGACGCGGAGCATGGGCACGAGGCCGTTGGA 1630124
|||||| || || || || |||| ||| || || || |||||||| |||| ||||| ||
Sbjct 17555 CTGGTCAACATAACGGGCAGTGTTGTTGAAAACACGTAGCATGGGAACGATACCGTTCGA 17614
Query 1630125 CTCGCCGTTGGTGCCCGCCACGTAGGCGCCGGCGGCGCGCACCTTGTGCGCGGCAAAGCC 1630184
||||| || || || | ||| | ||| | ||| || | ||| | | ||
Sbjct 17615 AGTACCGTTAGTACCAGCAATGTAAGAGCCAGTGGCACGAATACGGTGGACATTGAGACC 17674
Query 1630185 GATGCCGCCGGCCGACTTGGAGATGAGCGCGCACTGTTTGAGCGTGTCGTAGATGCCCTC 1630244
||| ||||| ||| |||||| || | || || ||||| || ||||| ||||||||
Sbjct 17675 GATACCGCCAGCCATCTTGGAAATCATGGCACAAGTCTTGAGGGTATCGTAAATGCCCTC 17734
Query 1630245 GATCGAGTCGGCCTTCATGTCCACGAGAAAGCACGACGAGTTTTGCGGGTGCGCCGTGCC 1630304
||| ||| | |||||||| || || |||||||| || || | || | || ||
Sbjct 17735 GATGCTGTCATCTTTCATGTCGACTAGGAAGCACGAAGACAACTGAGCCTGGGGGGTACC 17794
Query 1630305 GGCGTTGAAGAGCGTGGGCGTCGCCGCGGTGAACAACTGCCGCGACATGGCGTCGTAGGT 1630364
|| || |||||||| || | || ||||| |||| | ||||| || ||||||
Sbjct 17795 AGCATTAAAGAGCGTAGGTGATGCGTGAGTGAAGAACTTGCTGGACATAAAGTTGTAGGT 17854
Query 1630365 GGCGAGCACGCG 1630376
| ||||| ||
Sbjct 17855 TTCAAGCACACG 17866
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 6107023899120385
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |