Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceratocystis_20albifundus_20[genbank_20GCA_5F000813685.1_202015-01- 02] 1,405 sequences; 26,875,327 total letters Query= NC_021923.1 Length=140633 Score E Sequences producing significant alignments: (Bits) Value seq539 104 2e-17 seq1207 93.3 4e-14 seq492 86.0 6e-12 >seq539 Length=40911 Score = 104 bits (114), Expect = 2e-17 Identities = 465/734 (63%), Gaps = 27/734 (4%) Strand=Plus/Plus Query 138508 ACCTGAAATTCACCGGCCAATACTCGACGAACGTAAATGTTGTTGGTGAAAGGCTCAAAC 138567 ||||| || || || || | || || || ||| |||||| ||| | || || || Sbjct 16509 ACCTGGAACTCGCCAGCAAGAACGCGGCGCTGGTAGATGTTGGATGTGTAGGGTTCGAAG 16568 Query 138568 GATTCGTTGTTTCCCAGAATCTGAGCCGTGGTCGCGGTCGGCATGTACGCCACCAAAAGA 138627 | || ||||| ||||||||||| | ||| | || || |||||| || |||| |||| Sbjct 16569 CACTCATTGTTGCCCAGAATCTGCGATGTGCTGGCTGTAGGCATGGGTGCAACCAGAAGA 16628 Query 138628 GAATTCCGTAAACCGTGAAGCTTGATTCGTTCCTTGAGCGACGACCAGTCCCACAAATCG 138687 ||||| |||| ||| || | || || ||||| || || | ||||||||||| || Sbjct 16629 GAATTGCGTACACCATGCTGTTTAATCTTCTCCTTCAGAGAAGTCCAGTCCCACAGGTCA 16688 Query 138688 CTAGGTTTTTTGTTCCACATATCGTACTGTAACATTCCCAAACTTGCGGGACTG-----C 138742 ||||| | | ||||||||| |||| || || | |||| | ||| | | Sbjct 16689 CTAGGAGTCACATCCCACATATCAAACTGCAAGAT-----ACCTTGGGAGACAGGGGAAC 16743 Query 138743 CTTCGTACGAATCGTATACACCAAACTCTTGCGCCAACTCGTTGCTCGCCTCGAGCGCAC 138802 | || || | ||| ||| | || || | || | || || || Sbjct 16744 CCTCATAGGTTGAGTAAGTACCCTCCGTCTGGGCGATTTCCATTGAAGCAGTTAGTGCGG 16803 Query 138803 CATAGTAAATAGTTTCGGCAATCTGCTGATTGAGCAATCGGGCCTCGGCGCTCTCGTACG 138862 | | ||| || ||||| |||||| | || ||| || || |||| | ||| | | Sbjct 16804 CGTGGTAGATGGTTTCAAAAATCTGTTTGTTAAGCTGGCGTGCTTCGGGGGATTCGAAAG 16863 Query 138863 GCATGCGGAGCATCGTGAACGCGTCGGCCAGCCCTTGCACGCCCACTCCGACAGGGCGAT 138922 |||||||||| ||| || || |||| || || || || || || | || || | Sbjct 16864 GCATGCGGAGAGCAAGGAAAGCATCAGCCAAGCCCTGTACACCAACACCAATGGGACGGT 16923 Query 138923 GGCGCAGATTTGACGCTTTTGCG-GCTTC---GATAGGATAATAGTTTACATCGATGATT 138978 |||||| || ||| ||| | ||||| || ||| || | || ||||| ||||| Sbjct 16924 GGCGCA----TGTTGCTGTTGTGAGCTTCCTGGACAGGGTAGTGATTCACATCAATGATG 16979 Query 138979 TTGTTTAAATTTCGCACGACCACCTTAGTCGTATGCTTTAATCGTTCAAAATCGTATGTG 139038 ||||| || || || || || | ||| | | || || ||| || || Sbjct 16980 CGGTTTAGGTTGCGAACAACAACTTGAGTGACTTCGTGTAGCTTTTTAAAGTCATACTCA 17039 Query 139039 CCCCCGTTGTCGTCGACGACGTCGACAAATTTGTTGACACAAATCGAGGCTATGTTGCAC 139098 ||| ||||| ||| |||| | || | || | || |||| ||||||| Sbjct 17040 CCCTTGTTGTAGTCCACGA-----AGGAAGGAAGGGCCAGA----GATGCTAGGTTGCAC 17090 Query 139099 ACCGCCACTTCGTCGGGGTCGCTGTATTCGACAATTTCGGCACACAAATTACTACACTTG 139158 || || || ||||| ||| | | || |||| ||| || | |||| || | | Sbjct 17091 ACAGCAACCTCGTCAGGGGCACAATACTCGATAATCTCAGTGCACAGGTTTGAGCTGCGG 17150 Query 139159 ATCGTACCTAAATTTTGTTGATTGCTTTTTCGGTTACAAGCATCTTTGTAAAGCATATAC 139218 || ||||||| ||||| |||||||| || ||||| ||| |||||||||||||| | Sbjct 17151 ATGGTACCTAGATTTTTCTGATTGCTCTTGCGGTTGCAATGGTCTTTGTAAAGCATGAAA 17210 Query 139219 GGTGTGCCAGTTTC 139232 || ||||||| || Sbjct 17211 GGGTTGCCAGTCTC 17224 >seq1207 Length=77990 Score = 93.3 bits (102), Expect = 4e-14 Identities = 135/191 (71%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 24703 GATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCAC 24762 ||||||||| || | || || || || ||||| || ||||| ||||| || || || | Sbjct 69069 GATGCAGATTTTCGTCAAGACCCTTACGGGTAAGACGATTACCCTCGAGGTTGAGTCCTC 69128 Query 24763 CGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822 ||||| | || | || || ||||| || ||||| || || || || || || || Sbjct 69129 GGACACTATCGACAATGTCAAGTCTAAGATTCAGGACAAGGAGGGCATTCCCCCGGACCA 69188 Query 24823 ACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAA 24882 || || ||||||| || || || |||||||||||| | | | |||| || || || Sbjct 69189 GCAGCGCCTGATCTTCGCTGGCAAGCAGCTGGAGGATGGCCGCACCCTGTCTGACTACAA 69248 Query 24883 CATTCAAAAGG 24893 |||||| |||| Sbjct 69249 CATTCAGAAGG 69259 >seq492 Length=47418 Score = 86.0 bits (94), Expect = 6e-12 Identities = 146/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 24719 AAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACCGACACAGTAGAAACG 24778 || || || || ||||| || ||||| || || || || | | ||||| | || | Sbjct 44556 AAGACCCTGACGGGTAAGACCATTACCCTGGAGGTCGAGTCTTCGGACACGATCGACAAC 44615 Query 24779 GTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAACAACGTTTGATCTTT 24838 || || |||||||| ||||| || || || || || || || || || ||||||||| Sbjct 44616 GTCAAGTCCAAGATCCAGGACAAGGAGGGCATTCCCCCGGACCAGCAGCGCTTGATCTTT 44675 Query 24839 GCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAACATTCAAAAGGAATCG 24898 || || || ||||| |||||| | | |||| || || ||||| || ||||| || Sbjct 44676 GCTGGCAAGCAGCTTGAGGATGGCCGCACTCTGTCCGACTACAACATCCAGAAGGAGTCC 44735 Query 24899 ACACTACACTTGGTGTTGCGATTGCGCGGAGG 24930 || || ||| | || |||| |||| || || Sbjct 44736 ACTCTCCACCTTGTCCTGCGCCTGCGTGGTGG 44767 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 449889698673400