Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ceratocystis_20albifundus_20[genbank_20GCA_5F000813685.1_202015-01-
02] 1,405 sequences; 26,875,327 total letters
Query= NC_021923.1
Length=140633
Score E
Sequences producing significant alignments: (Bits) Value
seq539 104 2e-17
seq1207 93.3 4e-14
seq492 86.0 6e-12
>seq539
Length=40911
Score = 104 bits (114), Expect = 2e-17
Identities = 465/734 (63%), Gaps = 27/734 (4%)
Strand=Plus/Plus
Query 138508 ACCTGAAATTCACCGGCCAATACTCGACGAACGTAAATGTTGTTGGTGAAAGGCTCAAAC 138567
||||| || || || || | || || || ||| |||||| ||| | || || ||
Sbjct 16509 ACCTGGAACTCGCCAGCAAGAACGCGGCGCTGGTAGATGTTGGATGTGTAGGGTTCGAAG 16568
Query 138568 GATTCGTTGTTTCCCAGAATCTGAGCCGTGGTCGCGGTCGGCATGTACGCCACCAAAAGA 138627
| || ||||| ||||||||||| | ||| | || || |||||| || |||| ||||
Sbjct 16569 CACTCATTGTTGCCCAGAATCTGCGATGTGCTGGCTGTAGGCATGGGTGCAACCAGAAGA 16628
Query 138628 GAATTCCGTAAACCGTGAAGCTTGATTCGTTCCTTGAGCGACGACCAGTCCCACAAATCG 138687
||||| |||| ||| || | || || ||||| || || | ||||||||||| ||
Sbjct 16629 GAATTGCGTACACCATGCTGTTTAATCTTCTCCTTCAGAGAAGTCCAGTCCCACAGGTCA 16688
Query 138688 CTAGGTTTTTTGTTCCACATATCGTACTGTAACATTCCCAAACTTGCGGGACTG-----C 138742
||||| | | ||||||||| |||| || || | |||| | ||| | |
Sbjct 16689 CTAGGAGTCACATCCCACATATCAAACTGCAAGAT-----ACCTTGGGAGACAGGGGAAC 16743
Query 138743 CTTCGTACGAATCGTATACACCAAACTCTTGCGCCAACTCGTTGCTCGCCTCGAGCGCAC 138802
| || || | ||| ||| | || || | || | || || ||
Sbjct 16744 CCTCATAGGTTGAGTAAGTACCCTCCGTCTGGGCGATTTCCATTGAAGCAGTTAGTGCGG 16803
Query 138803 CATAGTAAATAGTTTCGGCAATCTGCTGATTGAGCAATCGGGCCTCGGCGCTCTCGTACG 138862
| | ||| || ||||| |||||| | || ||| || || |||| | ||| | |
Sbjct 16804 CGTGGTAGATGGTTTCAAAAATCTGTTTGTTAAGCTGGCGTGCTTCGGGGGATTCGAAAG 16863
Query 138863 GCATGCGGAGCATCGTGAACGCGTCGGCCAGCCCTTGCACGCCCACTCCGACAGGGCGAT 138922
|||||||||| ||| || || |||| || || || || || || | || || |
Sbjct 16864 GCATGCGGAGAGCAAGGAAAGCATCAGCCAAGCCCTGTACACCAACACCAATGGGACGGT 16923
Query 138923 GGCGCAGATTTGACGCTTTTGCG-GCTTC---GATAGGATAATAGTTTACATCGATGATT 138978
|||||| || ||| ||| | ||||| || ||| || | || ||||| |||||
Sbjct 16924 GGCGCA----TGTTGCTGTTGTGAGCTTCCTGGACAGGGTAGTGATTCACATCAATGATG 16979
Query 138979 TTGTTTAAATTTCGCACGACCACCTTAGTCGTATGCTTTAATCGTTCAAAATCGTATGTG 139038
||||| || || || || || | ||| | | || || ||| || ||
Sbjct 16980 CGGTTTAGGTTGCGAACAACAACTTGAGTGACTTCGTGTAGCTTTTTAAAGTCATACTCA 17039
Query 139039 CCCCCGTTGTCGTCGACGACGTCGACAAATTTGTTGACACAAATCGAGGCTATGTTGCAC 139098
||| ||||| ||| |||| | || | || | || |||| |||||||
Sbjct 17040 CCCTTGTTGTAGTCCACGA-----AGGAAGGAAGGGCCAGA----GATGCTAGGTTGCAC 17090
Query 139099 ACCGCCACTTCGTCGGGGTCGCTGTATTCGACAATTTCGGCACACAAATTACTACACTTG 139158
|| || || ||||| ||| | | || |||| ||| || | |||| || | |
Sbjct 17091 ACAGCAACCTCGTCAGGGGCACAATACTCGATAATCTCAGTGCACAGGTTTGAGCTGCGG 17150
Query 139159 ATCGTACCTAAATTTTGTTGATTGCTTTTTCGGTTACAAGCATCTTTGTAAAGCATATAC 139218
|| ||||||| ||||| |||||||| || ||||| ||| |||||||||||||| |
Sbjct 17151 ATGGTACCTAGATTTTTCTGATTGCTCTTGCGGTTGCAATGGTCTTTGTAAAGCATGAAA 17210
Query 139219 GGTGTGCCAGTTTC 139232
|| ||||||| ||
Sbjct 17211 GGGTTGCCAGTCTC 17224
>seq1207
Length=77990
Score = 93.3 bits (102), Expect = 4e-14
Identities = 135/191 (71%), Gaps = 0/191 (0%)
Strand=Plus/Plus
Query 24703 GATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCAC 24762
||||||||| || | || || || || ||||| || ||||| ||||| || || || |
Sbjct 69069 GATGCAGATTTTCGTCAAGACCCTTACGGGTAAGACGATTACCCTCGAGGTTGAGTCCTC 69128
Query 24763 CGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822
||||| | || | || || ||||| || ||||| || || || || || || ||
Sbjct 69129 GGACACTATCGACAATGTCAAGTCTAAGATTCAGGACAAGGAGGGCATTCCCCCGGACCA 69188
Query 24823 ACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAA 24882
|| || ||||||| || || || |||||||||||| | | | |||| || || ||
Sbjct 69189 GCAGCGCCTGATCTTCGCTGGCAAGCAGCTGGAGGATGGCCGCACCCTGTCTGACTACAA 69248
Query 24883 CATTCAAAAGG 24893
|||||| ||||
Sbjct 69249 CATTCAGAAGG 69259
>seq492
Length=47418
Score = 86.0 bits (94), Expect = 6e-12
Identities = 146/212 (69%), Gaps = 0/212 (0%)
Strand=Plus/Plus
Query 24719 AAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACCGACACAGTAGAAACG 24778
|| || || || ||||| || ||||| || || || || | | ||||| | || |
Sbjct 44556 AAGACCCTGACGGGTAAGACCATTACCCTGGAGGTCGAGTCTTCGGACACGATCGACAAC 44615
Query 24779 GTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAACAACGTTTGATCTTT 24838
|| || |||||||| ||||| || || || || || || || || || |||||||||
Sbjct 44616 GTCAAGTCCAAGATCCAGGACAAGGAGGGCATTCCCCCGGACCAGCAGCGCTTGATCTTT 44675
Query 24839 GCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAACATTCAAAAGGAATCG 24898
|| || || ||||| |||||| | | |||| || || ||||| || ||||| ||
Sbjct 44676 GCTGGCAAGCAGCTTGAGGATGGCCGCACTCTGTCCGACTACAACATCCAGAAGGAGTCC 44735
Query 24899 ACACTACACTTGGTGTTGCGATTGCGCGGAGG 24930
|| || ||| | || |||| |||| || ||
Sbjct 44736 ACTCTCCACCTTGTCCTGCGCCTGCGTGGTGG 44767
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 449889698673400
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |