Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ceratocystis_20albifundus_20[genbank_20GCA_5F000813685.1_202015-01-
02] 1,405 sequences; 26,875,327 total letters
Query= NC_022098.1
Length=2473870
Score E
Sequences producing significant alignments: (Bits) Value
seq431 145 1e-28
seq593 113 7e-19
seq539 91.5 2e-12
>seq431
Length=155802
Score = 145 bits (160), Expect = 1e-28
Identities = 210/292 (72%), Gaps = 7/292 (2%)
Strand=Plus/Minus
Query 794377 AGGCCGGGCATGAGGCCGCGCTTCTTGAGCCAAAAGATGGCACAGAAACTGCCCGAGAAA 794436
|| || |||||||| || ||||| ||||| ||||||| ||| |||||||||
Sbjct 44133 AGACCAGGCATGAGACCACGCTTGCGCAGCCAGAAGATGGAGGCGAAGGCACCCGAGAAA 44074
Query 794437 AAGATGCCCTCGACGGCGGCAAAGCCGACGAGCCGCTCGGCAAAAGTGTCCAGGC-CCTC 794495
|||||||||||||| || |||||| | || || |||| |||||| || || | |||
Sbjct 44073 AAGATGCCCTCGACAGCAGCAAAGGCAACTAGGCGCTGGGCAAACGT----AGACTCCTT 44018
Query 794496 TTTGTTGATCCACTTCATCGCCCACTCTGCCTTTTTCCTCACCGAGGGCACCGTGTCGAT 794555
| | |||||||||||| ||||| || ||||| | | |||| | ||||| ||
Sbjct 44017 GTCGGTGATCCACTTCAGAGCCCAGTCGGCCTTGCGACGGATGCAGGGAATAGTGTCAAT 43958
Query 794556 GGCGCGAAAGAGGT-GGTCCTTCTCGACCGGGTCCTTGACGTAGGTGTCGATGAGGAGCG 794614
||| || |||| || | ||| || ||||||| ||||||||| || || ||||
Sbjct 43957 GGCATTGAATAGGTATGTGCGCTGCGA-GGGCTCCTTGATGTAGGTGTCAATTAGCAGCG 43899
Query 794615 AGTAGGTCTCTGAGTGGATGTTTTCGATGGCGATCTGGAAGCCATAAAAGCA 794666
| ||||| || || ||||||||||| || ||||||||| || || |||||
Sbjct 43898 AATAGGTTTCAGAATGGATGTTTTCCATCATGATCTGGAAACCGTAGAAGCA 43847
Score = 109 bits (120), Expect = 9e-18
Identities = 165/235 (70%), Gaps = 0/235 (0%)
Strand=Plus/Minus
Query 793908 TACTCGCCCACGCGCCGCTCGAAAAAGTTGGTCTTGCCCTCGAGCGAGATCAACTCCATC 793967
|| || || || ||| ||| || ||||| |||||||| |||||||||| ||||||
Sbjct 44475 TAATCACCGACACGCTTCTCAAAGAAGTTAGTCTTGCCGCCGAGCGAGATGTTCTCCATG 44416
Query 793968 CACGGGAACGGGTTGGCCGTCAGGTAGTGCTTCTCGCACCCGAGCGACGCAAGCAGGCGG 794027
| ||| ||||| | | |||| ||| ||| || || | |||||||||||
Sbjct 44415 AAGTCGAAGGGGTTTGTGGCACGGTACACCTTTTCGTTGCCTAGAGCAACAAGCAGGCGG 44356
Query 794028 TCGGCGACGAATTCAATGTACTGGCACATGAGGGCGGCGTTCATGCCGATGAGCGCCACG 794087
|| || || || ||||||||||| ||| || |||||||||| || | || | |
Sbjct 44355 TCCGCAACAAACTCAATGTACTGCTTCATCAGATCGGCGTTCATTCCTAGCAGACCGCAG 44296
Query 794088 GGCAGCGACTCGCTGACAAACTCTTTCTCGATCTCGACGGCCTCGATGATGATCT 794142
|| || | |||| | | ||||| ||||||||| | ||||| || |||||||||
Sbjct 44295 GGAAGAGCCTCGGTCAGGAACTCCTTCTCGATCACAACGGCATCAGTGATGATCT 44241
>seq593
Length=35253
Score = 113 bits (124), Expect = 7e-19
Identities = 89/107 (83%), Gaps = 0/107 (0%)
Strand=Plus/Minus
Query 2035647 GCCGCCAACTACCTCGACATCAAGCCCCTCCTCGATTTGGGGTGCAAGACCGTGGCCAAC 2035706
||| ||||||| || || ||||||||| | ||||| | || ||||||||||| ||||||
Sbjct 6346 GCCTCCAACTATCTTGATATCAAGCCCTTGCTCGACGTTGGCTGCAAGACCGTCGCCAAC 6287
Query 2035707 CTTATCAAGGGCAAGTCGCCCGAGGACATCCGCAAGACCTTTAACAT 2035753
| |||||||||||||| ||||| || |||||||||||||| || ||
Sbjct 6286 ATGATCAAGGGCAAGTCTCCCGAAGAAATCCGCAAGACCTTCAATAT 6240
>seq539
Length=40911
Score = 91.5 bits (100), Expect = 2e-12
Identities = 175/258 (68%), Gaps = 0/258 (0%)
Strand=Plus/Plus
Query 2073540 CTGGTCGACATAGCGCGCCGTGTCGTTAAAGACGCGGAGCATGGGCACAAGGCCGTTGGA 2073599
|||||| ||||| || || |||| ||| || || || |||||||| || | ||||| ||
Sbjct 17555 CTGGTCAACATAACGGGCAGTGTTGTTGAAAACACGTAGCATGGGAACGATACCGTTCGA 17614
Query 2073600 CTCGCCGTTGGTGCCCGCCACGTAGGCGCCCGAGGCGCGCACCTTGTGCGCGGCAAAGCC 2073659
||||| || || || | ||| | ||| | ||| || | ||| | | ||
Sbjct 17615 AGTACCGTTAGTACCAGCAATGTAAGAGCCAGTGGCACGAATACGGTGGACATTGAGACC 17674
Query 2073660 GATGCCGCCGGCCGCCTTGGAGATGAGCGCGCACTTTTTCAGCGTCTCGTAGATGCCCTC 2073719
||| ||||| ||| |||||| || | || || | || || || ||||| ||||||||
Sbjct 17675 GATACCGCCAGCCATCTTGGAAATCATGGCACAAGTCTTGAGGGTATCGTAAATGCCCTC 17734
Query 2073720 GATCGAGTCGGCCTTCATGTCCAACAGAAAGCACGACGAGTTTTGCGGGCGCGCCGTGCC 2073779
||| ||| | |||||||| | || |||||||| || || | | | || ||
Sbjct 17735 GATGCTGTCATCTTTCATGTCGACTAGGAAGCACGAAGACAACTGAGCCTGGGGGGTACC 17794
Query 2073780 GGCATTGAAGAGCGTGGG 2073797
||||| |||||||| ||
Sbjct 17795 AGCATTAAAGAGCGTAGG 17812
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 7916096943741795
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |