Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceratocystis_20albifundus_20[genbank_20GCA_5F000813685.1_202015-01- 02] 1,405 sequences; 26,875,327 total letters Query= NC_022098.1 Length=2473870 Score E Sequences producing significant alignments: (Bits) Value seq431 145 1e-28 seq593 113 7e-19 seq539 91.5 2e-12 >seq431 Length=155802 Score = 145 bits (160), Expect = 1e-28 Identities = 210/292 (72%), Gaps = 7/292 (2%) Strand=Plus/Minus Query 794377 AGGCCGGGCATGAGGCCGCGCTTCTTGAGCCAAAAGATGGCACAGAAACTGCCCGAGAAA 794436 || || |||||||| || ||||| ||||| ||||||| ||| ||||||||| Sbjct 44133 AGACCAGGCATGAGACCACGCTTGCGCAGCCAGAAGATGGAGGCGAAGGCACCCGAGAAA 44074 Query 794437 AAGATGCCCTCGACGGCGGCAAAGCCGACGAGCCGCTCGGCAAAAGTGTCCAGGC-CCTC 794495 |||||||||||||| || |||||| | || || |||| |||||| || || | ||| Sbjct 44073 AAGATGCCCTCGACAGCAGCAAAGGCAACTAGGCGCTGGGCAAACGT----AGACTCCTT 44018 Query 794496 TTTGTTGATCCACTTCATCGCCCACTCTGCCTTTTTCCTCACCGAGGGCACCGTGTCGAT 794555 | | |||||||||||| ||||| || ||||| | | |||| | ||||| || Sbjct 44017 GTCGGTGATCCACTTCAGAGCCCAGTCGGCCTTGCGACGGATGCAGGGAATAGTGTCAAT 43958 Query 794556 GGCGCGAAAGAGGT-GGTCCTTCTCGACCGGGTCCTTGACGTAGGTGTCGATGAGGAGCG 794614 ||| || |||| || | ||| || ||||||| ||||||||| || || |||| Sbjct 43957 GGCATTGAATAGGTATGTGCGCTGCGA-GGGCTCCTTGATGTAGGTGTCAATTAGCAGCG 43899 Query 794615 AGTAGGTCTCTGAGTGGATGTTTTCGATGGCGATCTGGAAGCCATAAAAGCA 794666 | ||||| || || ||||||||||| || ||||||||| || || ||||| Sbjct 43898 AATAGGTTTCAGAATGGATGTTTTCCATCATGATCTGGAAACCGTAGAAGCA 43847 Score = 109 bits (120), Expect = 9e-18 Identities = 165/235 (70%), Gaps = 0/235 (0%) Strand=Plus/Minus Query 793908 TACTCGCCCACGCGCCGCTCGAAAAAGTTGGTCTTGCCCTCGAGCGAGATCAACTCCATC 793967 || || || || ||| ||| || ||||| |||||||| |||||||||| |||||| Sbjct 44475 TAATCACCGACACGCTTCTCAAAGAAGTTAGTCTTGCCGCCGAGCGAGATGTTCTCCATG 44416 Query 793968 CACGGGAACGGGTTGGCCGTCAGGTAGTGCTTCTCGCACCCGAGCGACGCAAGCAGGCGG 794027 | ||| ||||| | | |||| ||| ||| || || | ||||||||||| Sbjct 44415 AAGTCGAAGGGGTTTGTGGCACGGTACACCTTTTCGTTGCCTAGAGCAACAAGCAGGCGG 44356 Query 794028 TCGGCGACGAATTCAATGTACTGGCACATGAGGGCGGCGTTCATGCCGATGAGCGCCACG 794087 || || || || ||||||||||| ||| || |||||||||| || | || | | Sbjct 44355 TCCGCAACAAACTCAATGTACTGCTTCATCAGATCGGCGTTCATTCCTAGCAGACCGCAG 44296 Query 794088 GGCAGCGACTCGCTGACAAACTCTTTCTCGATCTCGACGGCCTCGATGATGATCT 794142 || || | |||| | | ||||| ||||||||| | ||||| || ||||||||| Sbjct 44295 GGAAGAGCCTCGGTCAGGAACTCCTTCTCGATCACAACGGCATCAGTGATGATCT 44241 >seq593 Length=35253 Score = 113 bits (124), Expect = 7e-19 Identities = 89/107 (83%), Gaps = 0/107 (0%) Strand=Plus/Minus Query 2035647 GCCGCCAACTACCTCGACATCAAGCCCCTCCTCGATTTGGGGTGCAAGACCGTGGCCAAC 2035706 ||| ||||||| || || ||||||||| | ||||| | || ||||||||||| |||||| Sbjct 6346 GCCTCCAACTATCTTGATATCAAGCCCTTGCTCGACGTTGGCTGCAAGACCGTCGCCAAC 6287 Query 2035707 CTTATCAAGGGCAAGTCGCCCGAGGACATCCGCAAGACCTTTAACAT 2035753 | |||||||||||||| ||||| || |||||||||||||| || || Sbjct 6286 ATGATCAAGGGCAAGTCTCCCGAAGAAATCCGCAAGACCTTCAATAT 6240 >seq539 Length=40911 Score = 91.5 bits (100), Expect = 2e-12 Identities = 175/258 (68%), Gaps = 0/258 (0%) Strand=Plus/Plus Query 2073540 CTGGTCGACATAGCGCGCCGTGTCGTTAAAGACGCGGAGCATGGGCACAAGGCCGTTGGA 2073599 |||||| ||||| || || |||| ||| || || || |||||||| || | ||||| || Sbjct 17555 CTGGTCAACATAACGGGCAGTGTTGTTGAAAACACGTAGCATGGGAACGATACCGTTCGA 17614 Query 2073600 CTCGCCGTTGGTGCCCGCCACGTAGGCGCCCGAGGCGCGCACCTTGTGCGCGGCAAAGCC 2073659 ||||| || || || | ||| | ||| | ||| || | ||| | | || Sbjct 17615 AGTACCGTTAGTACCAGCAATGTAAGAGCCAGTGGCACGAATACGGTGGACATTGAGACC 17674 Query 2073660 GATGCCGCCGGCCGCCTTGGAGATGAGCGCGCACTTTTTCAGCGTCTCGTAGATGCCCTC 2073719 ||| ||||| ||| |||||| || | || || | || || || ||||| |||||||| Sbjct 17675 GATACCGCCAGCCATCTTGGAAATCATGGCACAAGTCTTGAGGGTATCGTAAATGCCCTC 17734 Query 2073720 GATCGAGTCGGCCTTCATGTCCAACAGAAAGCACGACGAGTTTTGCGGGCGCGCCGTGCC 2073779 ||| ||| | |||||||| | || |||||||| || || | | | || || Sbjct 17735 GATGCTGTCATCTTTCATGTCGACTAGGAAGCACGAAGACAACTGAGCCTGGGGGGTACC 17794 Query 2073780 GGCATTGAAGAGCGTGGG 2073797 ||||| |||||||| || Sbjct 17795 AGCATTAAAGAGCGTAGG 17812 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7916096943741795