Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ceratocystis_20albifundus_20[genbank_20GCA_5F000813685.1_202015-01-
02] 1,405 sequences; 26,875,327 total letters
Query= NC_022646.1
Length=101818
Score E
Sequences producing significant alignments: (Bits) Value
seq1207 118 7e-22
seq576 114 8e-21
seq492 111 1e-19
>seq1207
Length=77990
Score = 118 bits (130), Expect = 7e-22
Identities = 144/194 (74%), Gaps = 8/194 (4%)
Strand=Plus/Minus
Query 34788 CCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGA 34847
||||||||||||| ||||| || ||| |||| |||| ||||| ||||| || |||||||
Sbjct 69259 CCTTCTGAATGTTGTAGTCAGACAGGGTGCGGCCATCCTCCAGCTGCTTGCCAGCGAAGA 69200
Query 34848 TCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGATG 34907
|||| || |||||||| | || | ||||||||||| | || || ||||| ||
Sbjct 69199 TCAGGCGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCCTGAATCTTAGACTTGAC--AT- 69143
Query 34908 CTATCGAT----TCATTGGCCTCGACATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTT 34963
| ||||| || || ||| || || | ||| || ||||| ||||| ||||||||
Sbjct 69142 -TGTCGATAGTGTCCGAGGACTCAACCTCGAGGGTAATCGTCTTACCCGTAAGGGTCTTG 69084
Query 34964 ACAAAGATCTGCAT 34977
|| || ||||||||
Sbjct 69083 ACGAAAATCTGCAT 69070
>seq576
Length=37320
Score = 114 bits (126), Expect = 8e-21
Identities = 153/213 (72%), Gaps = 0/213 (0%)
Strand=Plus/Minus
Query 34765 CAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATC 34824
||| |||| |||| ||| |||||||| ||||| ||||| || ||| |||| ||||
Sbjct 12921 CAGAACCAAATGAAGAGTGGATTCCTTCTGGATGTTGTAGTCAGAGAGGGTGCGACCATC 12862
Query 34825 GTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTC 34884
|| ||||||||||| || ||||| || || |||||||| | || | |||||||||||
Sbjct 12861 CTCGAGTTGCTTTCCAGCAAAGATGAGACGCTGCTGGTCAGGAGGGATACCCTCCTTGTC 12802
Query 34885 GTTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGT 34944
| || || ||||| | || | || | |||||| || | || || ||
Sbjct 12801 CTGGATCTTGGACTTGACATTGTCAATAGTATCCGAAGACTCGACCTCGAGTGTAATAGT 12742
Query 34945 CTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977
||| ||||| |||||||| |||||||| |||||
Sbjct 12741 CTTGCCCGTCAGGGTCTTGACAAAGATTTGCAT 12709
Score = 96.9 bits (106), Expect = 2e-15
Identities = 147/207 (71%), Gaps = 8/207 (4%)
Strand=Plus/Minus
Query 34765 CAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATC 34824
||| |||| ||||| || |||||||| ||||| ||||| || ||| |||| | ||
Sbjct 12465 CAGAACCAAGTGAAGAGTAGATTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCGTC 12406
Query 34825 GTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTC 34884
|| || ||||||||||| || || || || ||||| || | || | |||||||| ||
Sbjct 12405 CTCAAGCTGCTTTCCGGCAAAAATGAGACGCTGCTGATCCGGAGGGATACCCTCCTTATC 12346
Query 34885 GTTTATTTTTTGTTTGACGGATGCTATCGAT----TCATTGGCCTCGACATCAACGGTTA 34940
| || || ||||| || | ||||| ||| || |||||| || | ||| |
Sbjct 12345 CTGGATCTTGGACTTGAC--AT--TGTCGATGGTATCAGAGGACTCGACTTCGAGGGTGA 12290
Query 34941 TGGTCTTTCCCGTGAGGGTCTTTACAA 34967
||||||| || || |||||||| ||||
Sbjct 12289 TGGTCTTGCCGGTAAGGGTCTTGACAA 12263
Score = 89.7 bits (98), Expect = 3e-13
Identities = 79/99 (80%), Gaps = 0/99 (0%)
Strand=Plus/Minus
Query 34786 CTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAA 34845
||||||||| ||||| ||||| || ||| |||| |||| || || ||||||||||||||
Sbjct 12160 CTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCATCCTCAAGCTGCTTTCCGGCGAA 12101
Query 34846 GATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTC 34884
|| || || |||||||| | || | |||||||||||
Sbjct 12100 AATGAGACGCTGCTGGTCCGGAGGAATACCCTCCTTGTC 12062
>seq492
Length=47418
Score = 111 bits (122), Expect = 1e-19
Identities = 147/204 (72%), Gaps = 0/204 (0%)
Strand=Plus/Minus
Query 34765 CAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATC 34824
|||||| ||||| | ||| ||||||||| ||||| ||||| || || |||| ||||
Sbjct 44753 CAGGACAAGGTGGAGAGTGGACTCCTTCTGGATGTTGTAGTCGGACAGAGTGCGGCCATC 44694
Query 34825 GTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTC 34884
|| || ||||| || || ||||||| || |||||||| | || | |||||||||||
Sbjct 44693 CTCAAGCTGCTTGCCAGCAAAGATCAAGCGCTGCTGGTCCGGGGGAATGCCCTCCTTGTC 44634
Query 34885 GTTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGT 34944
| || || |||||| | |||| || | |||||| || | ||| |||||
Sbjct 44633 CTGGATCTTGGACTTGACGTTGTCGATCGTGTCCGAAGACTCGACCTCCAGGGTAATGGT 44574
Query 34945 CTTTCCCGTGAGGGTCTTTACAAA 34968
||| ||||| |||||||| || ||
Sbjct 44573 CTTACCCGTCAGGGTCTTGACGAA 44550
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 325687223019695
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |