Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceratocystis_20albifundus_20[genbank_20GCA_5F000813685.1_202015-01- 02] 1,405 sequences; 26,875,327 total letters Query= NC_024625.1 Length=151109 Score E Sequences producing significant alignments: (Bits) Value seq539 176 4e-39 seq431 163 3e-35 seq576 113 4e-20 seq492 102 8e-17 seq1207 100 3e-16 >seq539 Length=40911 Score = 176 bits (194), Expect = 4e-39 Identities = 941/1487 (63%), Gaps = 51/1487 (3%) Strand=Plus/Plus Query 148062 TGGTCAATGAACGCGCCACGGTCAGCGGCCATTTCAATGAGT---CGCTTTATCTTCATC 148118 ||||||||||| || ||||||||||| ||||||| | | | |||| || Sbjct 16305 TGGTCAATGAAAGCACCACGGTCAGCAGCCATTTGCACAACTGTACGCTGGGAA---ATT 16361 Query 148119 TCCCAGGCCGTCTTGTACAGCCGCTTGATATGATCGGGAATGCCGTCGATGCGCTGCACC 148178 ||||| | ||||||||||| || |||| | | ||||||| |||| ||| | Sbjct 16362 TCCCAAACGGTCTTGTACAGAGCTTTAATATCAGCAGGAATGCTAGGGATGTTCTGAATA 16421 Query 148179 GAGCCGCGGTGCGCAAAAATCTGATTGCGCATTTCGTCCGTGTATAGGTTGAGCTCGATC 148238 || || || ||||| ||| | || ||| | ||| | ||| || |||| Sbjct 16422 GATCCATTGTCCGCAATAATGCGGTTCTTCATATTGTCAGACCATAAACCAAGATCGACA 16481 Query 148239 AGGTCATCGATCAGATACTGATTCACCACCTGAAACTCGCCGGCGAGCACGCGCCGCAGA 148298 |||||| | || | | || |||||||| |||||||| || || ||||| ||| | Sbjct 16482 AGGTCACGTAGGAGCCAGGGGTTGACCACCTGGAACTCGCCAGCAAGAACGCGGCGCTGG 16541 Query 148299 TACACGTTGCTCGTAAACGGTTCAAACGACTCGTTGTTGCCCAAAATCTGCGCGGTCGTT 148358 || | |||| || | ||||| || |||| |||||||||| |||||||| || | Sbjct 16542 TAGATGTTGGATGTGTAGGGTTCGAAGCACTCATTGTTGCCCAGAATCTGCGATGTGCTG 16601 Query 148359 GCCGTGGGCATGTACGCTACCAGCAGCGAGTTGCGCAAACCGCGATTTTTTATTTTGCGC 148418 || || |||||| || ||||| || || ||||| | ||| | | ||| || || | Sbjct 16602 GCTGTAGGCATGGGTGCAACCAGAAGAGAATTGCGTACACCATGCTGTTTAATCTTCTCC 16661 Query 148419 TTCAGAGCCGCCCAGTCCCAGAGCGGCGAC--GGTGTCACGTTCCACATGTCGTACTGCA 148476 ||||||| | ||||||||| | || || || ||||| | |||||| || |||||| Sbjct 16662 TTCAGAGAAGTCCAGTCCCACA--GGTCACTAGGAGTCACATCCCACATATCAAACTGCA 16719 Query 148477 GAATGCCGCGGCTAGCGGGGCTGCCCTCGTACGAGCTGTACGGTCCGTGCGCCGCCGCCA 148536 || || || | ||| ||||| || | ||| | || | || | || | Sbjct 16720 AGATACCTTGGGAGACAGGGGAACCCTCATAGGTTGAGTAAGTACCCTCCGTCTGGGCGA 16779 Query 148537 GTTCGCAGCTCGCCTCGAGCGCGCCGTAGTAAATCGTCTCGGCAATTTGCCTGTTGAGCA 148596 ||| || || ||| ||| ||| || || || ||| || |||| ||| Sbjct 16780 TTTCCATTGAAGCAGTTAGTGCGGCGTGGTAGATGGTTTCAAAAATCTGTTTGTTAAGCT 16839 Query 148597 GCGCCGCCGACTCGCTTTCGTACGGCATACGCAGCCGCACAAACGCGTCGGCAAGGCCCT 148656 | || | |||| | ||||| || || | || || || || | ||||| Sbjct 16840 GGCGTGCTTCGGGGGATTCGAAAGGCATGCGGAGAGCAAGGAAAGCATCAGCCAAGCCCT 16899 Query 148657 GTACGCCCACGCCAATGGGCCGGTGTTTAATGTTGGAGAGGCGCGCGCTCTCGAGCGGAT 148716 |||| || || |||||||| ||||| |||||| | | | || || || || | Sbjct 16900 GTACACCAACACCAATGGGACGGTGGCGCATGTTGCTGTTGTGAGCTTCCTGGACAGGGT 16959 Query 148717 AGTGGTTGCGGTCGATGATCTTGTCAAGATTGCGCACCACCACCTTTGTAATTCTGCGCA 148776 |||| || || ||||| || || ||||| || || || | || | | | | | Sbjct 16960 AGTGATTCACATCAATGATGCGGTTTAGGTTGCGAACAACAACTTGAGTGACTTCGTGTA 17019 Query 148777 GCAATTCAAAATCGTAC---------TTGTCATCTACGATGCATCGGTTCACGGCGATAG 148827 || || ||| || ||| |||| || |||| | | | | ||| | || Sbjct 17020 GCTTTTTAAAGTCATACTCACCCTTGTTGTAGTCCACGAAGGAAGG---AAGGGCCAGAG 17076 Query 148828 AGGCTAGATTGCACACGGCCGTCTCATCCGGGGCGCTGTACTCTACGATCTCGGCGCACA 148887 | ||||| |||||||| || ||| || ||||| | ||||| | ||||| | ||||| Sbjct 17077 ATGCTAGGTTGCACACAGCAACCTCGTCAGGGGCACAATACTCGATAATCTCAGTGCACA 17136 Query 148888 GATT---GCTGCATTTGATCACGCCCACGTTCTTTTGATTGCTCTTGCTGTTGCACGCGT 148944 | || ||||| ||| || | || || ||||||||||||| |||||| || Sbjct 17137 GGTTTGAGCTGC---GGATGGTACCTAGATTTTTCTGATTGCTCTTGCGGTTGCAATGGT 17193 Query 148945 CCTTGTACAGCATGTACGGTCCGCCAGTTTCCACCTGCGTTTCCACTATG--AACCGATG 149002 | ||||| |||||| | || |||||| || ||| | |||| ||| | | | Sbjct 17194 CTTTGTAAAGCATGAAAGGGTTGCCAGTCTCAGTCTGGGCCTCCAGAATGGCATACCA-- 17251 Query 149003 CAGGTCCTGCGCGCGCACTTG----CTGCTCG-TAGCGACCCTCCTGCTCGTATAAAGTA 149057 ||| | ||| || |||| | | || ||||||||||| |||||| | Sbjct 17252 CAGCTTCTGGGC-----CTTGACAACCGTGCGACCGCGACCCTCCTTCTCGTACTTTTCA 17306 Query 149058 TACAGCCGCTCGAACGCCTCGCCGTAGCAATCGTCGAGACCGGGGCACTTGTGCGGGCAC 149117 ||||| ||| ||| | ||||| |||||||| | | |||||||| | | |||||| Sbjct 17307 TACAGAGCCTCAAACTCTTCGCCATAGCAATCCGCCAAGCCGGGGCATTCATTGGGGCAC 17366 Query 149118 ATGAGCGACCACACGCCGTCCGCGTACACGCGCTTCATAAACAGATCGGGCACCCAGAGC 149177 ||||| | ||| | | | | || |||||||| |||| ||| | ||| || Sbjct 17367 ATGAGAGTCCAGTCCTCATTTTTCTCAACACGCTTCATGAACAAGTCGCAGATCCACAGG 17426 Query 149178 GCGTACATGAGGTCGCGCGCCTTGCAGTCTTCGGCGCCCATGTTGCGGCGCAGGTTGAGC 149237 || | | ||||| || || | ||||| || ||| ||||| || ||| Sbjct 17427 GCCAAGAATAGGTCACGAGCACGGACTTCTTCCTTTCCGTGGTTCTTGCGCAAGTCGAGG 17486 Query 149238 ACGCTGAATATGTCCGCGTGCCACGGCTCAATGTACACCGCGAGCGCGCCCTTGCGCTTG 149297 | ||| | || || ||||| ||||| | ||| | || | || || |||||| Sbjct 17487 AACTCGAAGACATCAGCATGCCATGGCTCGAGGTAAATGGCAAAGGCTCCAGGTCGCTTG 17546 Query 149298 ---CCGCCCTGGTCGACGTGGCGCACCATGTTGTTAAACACTCGAACCATAGGTTCAATG 149354 || |||||||| || | || | ||||||| || || || | ||| || | || Sbjct 17547 TTTCCACCCTGGTCAACATAACGGGCAGTGTTGTTGAAAACACGTAGCATGGGAACGATA 17606 Query 149355 CCACTGGCAGTGCCGTTAGTA-GAGCTAATGCGACTGCCGCGCGCTCGCACTTTGTGCAC 149413 || | | ||| ||||||||| ||| |||| | ||| || || | ||| || Sbjct 17607 CCGTTCGAAGTACCGTTAGTACCAGC-AATGTAAGAGCCAGTGGCACGAATACGGTGGAC 17665 Query 149414 GTTGACGCCGATGCCGCC-GCCGTACTTTGAGATGGCCGCGC-AGTCGCCGAGCGTCGAG 149471 |||| ||||| ||||| ||| | ||| || || || | |||| ||| || | Sbjct 17666 ATTGAGACCGATACCGCCAGCCAT-CTTGGAAATCATGGCACAAGTC-TTGAGGGTATCG 17723 Query 149472 TAGATGCCCTCGATGCTGTCGCGCTTCATGGTCAGCAGAAAGCACGA 149518 || ||||||||||||||||| |||||| | || |||||||| Sbjct 17724 TAAATGCCCTCGATGCTGTCATCTTTCATGTCGACTAGGAAGCACGA 17770 >seq431 Length=155802 Score = 163 bits (180), Expect = 3e-35 Identities = 347/507 (68%), Gaps = 21/507 (4%) Strand=Plus/Minus Query 120351 CTTGTACTCGCCGACGCGTTTCTCAAAAAAGTTTGTTTTGCCCTCCATCGAAATGTTGTT 120410 || ||| || ||||| || |||||||| ||||| || ||||| | | ||| ||||| | Sbjct 44479 CTGGTAATCACCGACACGCTTCTCAAAGAAGTTAGTCTTGCCGCCGAGCGAGATGTTCTC 44420 Query 120411 CATAAACTCGAACGGGTTGCTCGC--GTTAAAGTATTTCGGCTGGCCCAACTGTACGAGC 120468 ||| || ||||| ||||| | || | || | ||||| | ||| | || ||| Sbjct 44419 CATGAAGTCGAAGGGGTTTGTGGCACGGTACACCTTTTCG--TTGCCTAGAGCAACAAGC 44362 Query 120469 AGTCGGTCCGCTACAAACTCAATGTACTCGCACATGGACTGCGCGTTCATGCCCAGCAAC 120528 || |||||||| |||||||||||||||| ||| | |||||||| || |||| Sbjct 44361 AGGCGGTCCGCAACAAACTCAATGTACTGCTTCATCAGATCGGCGTTCATTCCTAGCAGA 44302 Query 120529 GCCACCGGCAAC-GCCGACGTGAAAAACTCCTTCTCAATGTCCACCGCCTCCTTGAACAT 120587 || | || || ||| || | ||||||||||| || | || || || ||| || Sbjct 44301 -CCGCAGGGAAGAGCCTCGGTCAGGAACTCCTTCTCGATCACAACGGCATCAGTGATGAT 44243 Query 120588 GGCGAGCA-TAGTG--TGGCCGGGCATCTTGTGTTCGATGCGCGTTCGGTAGTACAGGCA 120644 ||| ||| | || ||| |||| || | |||| | | | |||||| Sbjct 44242 CTTTTGCACTAGGTCCTTGCTGGGGCGGTTGT-TTAGGTGCGAGAACAG-----CAGGCA 44189 Query 120645 CGCAAAGTCCGTGTGCAGGCCCTCGTCGCGCGATATCAGCTCGTTGCTAAACGTCAGGCC 120704 |||||||| ||||||||||||||||| || || || |||||||| || ||||| || Sbjct 44188 AGCAAAGTCGGTGTGCAGGCCCTCGTCACGAGAAATGAGCTCGTTTGAGAAGGTCAGACC 44129 Query 120705 GGGCATGATGCCTTTCGTCTTG---ATGTAGAATATGGCGGCAAAGCTGCCCGAAAAGAA 120761 ||||||| || || |||| | |||| |||| ||| ||| ||||| || || Sbjct 44128 AGGCATGAGACC--ACG-CTTGCGCAGCCAGAAGATGGAGGCGAAGGCACCCGAGAAAAA 44072 Query 120762 CACGCCCTCCACGATGGCAAAGGCGACCATGCGCTCGGCCAACGTCGCCGTCTTGCTGTC 120821 | |||||| || |||||||| || | ||||| ||| ||||| | | |||| | Sbjct 44071 GATGCCCTCGACAGCAGCAAAGGCAACTAGGCGCTGGGCAAACGTAGACTCCTTGTCGGT 44012 Query 120822 GATCCACTTCATGGCCCACTCGGCCTT 120848 ||||||||||| ||||| |||||||| Sbjct 44011 GATCCACTTCAGAGCCCAGTCGGCCTT 43985 >seq576 Length=37320 Score = 113 bits (124), Expect = 4e-20 Identities = 132/176 (75%), Gaps = 2/176 (1%) Strand=Plus/Minus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGCC 133522 || ||||| ||||| || ||||| ||| || ||| | | | ||||| |||||||| || Sbjct 12165 GTAGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCA-TCCTCAAGCTGCTTTCC 12107 Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTT 133582 ||| ||||||| ||||||||||| ||||| || || |||||||| |||||| ||| Sbjct 12106 GGCGAAAATGAGACGCTGCTGGTCCGGAGGAATACCCTCCTTGTCCTGGATCTTAGACTT 12047 Query 133583 GAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCA 133638 | | |||| || || | | |||||| |||| ||||| ||| |||||||||| Sbjct 12046 AACGTTGTCAATAGTATCCGAAGACTCCACCTCGAGGGTGATGGTCTTGCCGGTCA 11991 Score = 100 bits (110), Expect = 3e-16 Identities = 148/207 (71%), Gaps = 2/207 (1%) Strand=Plus/Minus Query 133455 AAATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAG 133513 ||||| | ||||| || ||||| || ||||| || | ||| ||| | |||||||| Sbjct 12914 AAATGAAGAGTGGATTCCTTCTGGATGTTGTAGTCAGAGAGGGTGCGACCA-TCCTCGAG 12856 Query 133514 CTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGAT 133573 ||||| || || | ||||| ||||||||||| |||||||| || |||||||| ||| Sbjct 12855 TTGCTTTCCAGCAAAGATGAGACGCTGCTGGTCAGGAGGGATACCCTCCTTGTCCTGGAT 12796 Query 133574 CTTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCC 133633 ||| ||||| | |||| || || | | ||| || |||| || | || ||||| Sbjct 12795 CTTGGACTTGACATTGTCAATAGTATCCGAAGACTCGACCTCGAGTGTAATAGTCTTGCC 12736 Query 133634 GGTCAGAGTTTTTACGAAAATCTGCAT 133660 ||||| || || || || || ||||| Sbjct 12735 CGTCAGGGTCTTGACAAAGATTTGCAT 12709 >seq492 Length=47418 Score = 102 bits (112), Expect = 8e-17 Identities = 138/190 (73%), Gaps = 2/190 (1%) Strand=Plus/Minus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGCC 133522 |||||||| ||||| || ||||| ||| || ||| | | | ||||| ||||||||||| Sbjct 44737 GTGGACTCCTTCTGGATGTTGTAGTCGGACAGAGTGCGGCCA-TCCTCAAGCTGCTTGCC 44679 Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTT 133582 || | || | ||||||||||| || || ||||| |||||||| |||||| ||| Sbjct 44678 AGCAAAGATCAAGCGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCCTGGATCTTGGACTT 44619 Query 133583 GAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGT 133642 || | || | |||||| | | ||| || || | ||| | ||| || || ||||| || Sbjct 44618 GACGTTGTCGATCGTGTCCGAAGACTCGACCTCCAGGGTAATGGTCTTACCCGTCAGGGT 44559 Query 133643 TTTTACGAAA 133652 || |||||| Sbjct 44558 CTTGACGAAA 44549 >seq1207 Length=77990 Score = 100 bits (110), Expect = 3e-16 Identities = 115/155 (74%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 133506 TCCTCGAGCTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTG 133565 ||||| ||||||||||| ||| | || || ||||||||||| || || ||||| |||||| Sbjct 69224 TCCTCCAGCTGCTTGCCAGCGAAGATCAGGCGCTGCTGGTCCGGGGGAATGCCCTCCTTG 69165 Query 133566 TCGGTGATCTTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACG 133625 || ||||| ||||| | || | ||||| | || ||| || |||| ||| | Sbjct 69164 TCCTGAATCTTAGACTTGACATTGTCGATAGTGTCCGAGGACTCAACCTCGAGGGTAATC 69105 Query 133626 GTTTTGCCGGTCAGAGTTTTTACGAAAATCTGCAT 133660 || || || || || || || |||||||||||||| Sbjct 69104 GTCTTACCCGTAAGGGTCTTGACGAAAATCTGCAT 69070 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 483412309922200