Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ceratocystis_20albifundus_20[genbank_20GCA_5F000813685.1_202015-01-
02] 1,405 sequences; 26,875,327 total letters
Query= NC_026440.1
Length=2243109
Score E
Sequences producing significant alignments: (Bits) Value
seq431 212 9e-49
seq539 116 5e-20
>seq431
Length=155802
Score = 212 bits (234), Expect = 9e-49
Identities = 362/513 (71%), Gaps = 24/513 (5%)
Strand=Plus/Plus
Query 1455775 GATATGGGAAATGTACCAAAAAGGCCGAGGCCTCCTTTTGGACCGCCGAGGAGGTCGACC 1455834
||| ||| | |||||| || ||||||||||| ||||| ||||| || || ||| | || |
Sbjct 43633 GATCTGGCAGATGTAC-AAGAAGGCCGAGGCTTCCTTCTGGACTGCTGAAGAGATTGATC 43691
Query 1455835 TCGGCGCCGA----CACGGTCCACTGGGTGT--CG-CTGAGCGACGACGAGCGCCATTTC 1455887
|| | || |||| ||||| || |||| | | ||||||| | |||
Sbjct 43692 TCTCCAAGGATCTCCACG----ACTGGAACAACCGTCTGAACAAGGACGAGCAGTACTTC 43747
Query 1455888 ATCAAGCACGTCCTCGCCTTTTTTCGCCGCCAGCGATGGCATCGTGGCCGAGAACCTGGC 1455947
||| ||| | |||||||| ||| || ||| ||||||||||| ||| ||||| |
Sbjct 43748 ATCTCCCACATTCTCGCCTTCTTT-GCTGCCTCTGATGGCATCGTCAACGAAAACCTCGT 43806
Query 1455948 CGGCCGCTTTATGAAAGAGGTCCAATTGCCAGAGGCACGTTTGTTTTACGGGTTCCAGAT 1456007
| ||||| ||||| || | || ||||| || | || ||||| ||||||||
Sbjct 43807 TGAGCGCTTCTCAGGCGAGGTGCAGATTCCCGAGGCCCGGTGCTTCTACGGTTTCCAGAT 43866
Query 1456008 CGCCATCGAAAACATCCACTCTGAAACCTACTCGCTCCTGATCGACACCTACGTCAAGGA 1456067
| || ||||||||||| ||||||||||| ||||| || || ||||||||| |||||||
Sbjct 43867 CATGATGGAAAACATCCATTCTGAAACCTATTCGCTGCTAATTGACACCTACATCAAGGA 43926
Query 1456068 CCCGGTCGAGAAGGAC-CACCTCTTTCGCGCCATCGACACGGTGCCGTCGGTGAGGAAAA 1456126
|| ||| | || |||| || ||||| ||||| | || | | | |
Sbjct 43927 GCC-CTCGCAGCGCACATACCTATTCAATGCCATTGACACTATTCCCTGCATCCGTCGCA 43985
Query 1456127 AGGCCGACTGGGCGATGAAGTGGATCA---ACAAGGAGGGCCTCGACACTTTGCCGAGCG 1456183
||||||||||||| |||||||||||| |||||||| || || |||||| ||||
Sbjct 43986 AGGCCGACTGGGCTCTGAAGTGGATCACCGACAAGGAG----TCTAC-GTTTGCCCAGCG 44040
Query 1456184 GCTCGTCGGCTTTGCCGC-GTCGAGGGCATCTTTTTCTCGGGCAGTTTCTGCGCCATCTT 1456242
|| || | |||||| || ||||||||||||||||||||||| ||| | |||||||
Sbjct 44041 CCTAGTTGCCTTTGCTGCTGTCGAGGGCATCTTTTTCTCGGGTGCCTTCGCCTCCATCTT 44100
Query 1456243 TTGGCTCAAGAAGCGCGGCCTCATGCCCGGTCT 1456275
||||| ||||| || |||||||| |||||
Sbjct 44101 CTGGCTGCGCAAGCGTGGTCTCATGCCTGGTCT 44133
Score = 86.0 bits (94), Expect = 9e-11
Identities = 154/221 (70%), Gaps = 3/221 (1%)
Strand=Plus/Plus
Query 1456521 AGATCATCGTCGAGGCCGTCGAGATCGAGAAAGAGTTTGTCAGCGAGTCGCTGCCGGTGG 1456580
|||||||| || ||||| | ||||||||| ||||| | | |||| | || || |
Sbjct 44241 AGATCATCACTGATGCCGTTGTGATCGAGAAGGAGTTCCTGACCGAGGCTCTTCCCTGCG 44300
Query 1456581 CGCTCATCGGCATGAACGCCACCGCTCATGTGCCAGTACATTGAATTTTGTCGCCGACCG 1456640
|| | || ||||||||| || ||| ||||||||||| ||| || || |||||
Sbjct 44301 GTCTGCTAGGAATGAACGCCGAT-CTGATGAAGCAGTACATTGAGTTT-GTTGCGGACCG 44358
Query 1456641 CCTGCTCGCGGCGCTCGGCTGCGGAGAAGCACTACCGGACGGCCAACCCGTTCCCATGGA 1456700
|||||| | || || ||| | || ||| ||||| | | ||||| ||| | |
Sbjct 44359 CCTGCTTGTTGCTCTAGGCAAC-GAAAAGGTGTACCGTGCCACAAACCCCTTCGACTTCA 44417
Query 1456701 TGGAGTTGATCTCGCTCGAGGGCAAGACCAACTTTTTCGAG 1456741
||||| |||||||||| |||||||| ||||| || |||
Sbjct 44418 TGGAGAACATCTCGCTCGGCGGCAAGACTAACTTCTTTGAG 44458
>seq539
Length=40911
Score = 116 bits (128), Expect = 5e-20
Identities = 333/504 (66%), Gaps = 21/504 (4%)
Strand=Plus/Minus
Query 259682 CACAAGGAGGTCCTCGACGCTGCCATCTGCCACGGCCGAGACTTTGGCTACTCGTACTTT 259741
|||||||| | || ||| |||||||| ||| || ||||| |||| |||||||
Sbjct 18040 CACAAGGATGAGCTGGACTCTGCCATCGTGTACGATCGTGACTTCAACTACCAGTACTTT 17981
Query 259742 GGTCTGGCGAC-CTTGCGCCGGTCCTACCTGACCAAAGTGCGCGATATTGTCGTCGAGCG 259800
|| | ||| |||| || | || ||||| ||| | | || | || || ||
Sbjct 17980 GGCTTTAAGACTCTTGAGC-GTTCTTACCTACTGAAACTCGATGGTAAGATTGTTGAACG 17922
Query 259801 GCCCCAGTATATGCTCATGCGTGTCGCCCTTGGCCATTATGGGTTTGCCGACGTCGACAA 259860
|||||| | ||| | |||||||| || | || ||| |||| |||||
Sbjct 17921 TCCCCAGCACATGATAATGCGTGTTGCTGTGGGT-ATTTGGGGT-----------GACAA 17874
Query 259861 TGCGCTGGAGCACGTGCTCGCCACCTACGAGGCCATGTCGCAGCA-GTTGTTCACCTCA- 259918
| | || | ||||| | |||||| | ||||| ||||| ||| ||||| |||
Sbjct 17873 AG---TCGAACGTGTGCTTGAAACCTACAACTTTATGTC-CAGCAAGTTCTTCAC-TCAC 17819
Query 259919 GCGACGCCCACGCTCTTTAATGCCGGCACGCCGCGCCCGCAGAATTCGTCGTGCTTTCTG 259978
|| | || |||||||||||||| || || || | | ||| || |||||||| ||
Sbjct 17818 GCATCACCTACGCTCTTTAATGCTGGTACCCCCCAGGCTCAGTTGTCTTCGTGCTTCCTA 17759
Query 259979 TTGGACATGAAGGCCGATTCGATCGAGGGCATCTATGACACGCTCAAGCAGTGCGCGCTC 260038
| |||||||| | || ||||||||||| || || || |||||| || || |
Sbjct 17758 GTCGACATGAAAGATGACAGCATCGAGGGCATTTACGATACCCTCAAGACTTGTGCCATG 17699
Query 260039 ATCTCCAAGGCGGCCGGCGGCATCGGTTTTGCCGCACACAAGGTGCGCGCCGCGGGCGCC 260098
|| |||||| ||| ||||| |||||| | | ||| | || ||| | ||| |
Sbjct 17698 ATTTCCAAGATGGCTGGCGGTATCGGTCTCAATGTCCACCGTATTCGTGCCACTGGCTCT 17639
Query 260099 TACGTGGCGGGCACCAACGGCCAGTCCAACGGCCTTGTGCCCATGCTTCGCGTTTTTAAC 260158
||| | || || || ||||| || ||||| | || |||||||| || ||||| |||
Sbjct 17638 TACATTGCTGGTACTAACGGTACTTCGAACGGTATCGTTCCCATGCTACGTGTTTTCAAC 17579
Query 260159 GACACGGCGCGCTACGTCGACCAG 260182
|||| || || || || ||||||
Sbjct 17578 AACACTGCCCGTTATGTTGACCAG 17555
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 7177675685167610
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |