Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceratocystis_20albifundus_20[genbank_20GCA_5F000813685.1_202015-01- 02] 1,405 sequences; 26,875,327 total letters Query= NC_026440.1 Length=2243109 Score E Sequences producing significant alignments: (Bits) Value seq431 212 9e-49 seq539 116 5e-20 >seq431 Length=155802 Score = 212 bits (234), Expect = 9e-49 Identities = 362/513 (71%), Gaps = 24/513 (5%) Strand=Plus/Plus Query 1455775 GATATGGGAAATGTACCAAAAAGGCCGAGGCCTCCTTTTGGACCGCCGAGGAGGTCGACC 1455834 ||| ||| | |||||| || ||||||||||| ||||| ||||| || || ||| | || | Sbjct 43633 GATCTGGCAGATGTAC-AAGAAGGCCGAGGCTTCCTTCTGGACTGCTGAAGAGATTGATC 43691 Query 1455835 TCGGCGCCGA----CACGGTCCACTGGGTGT--CG-CTGAGCGACGACGAGCGCCATTTC 1455887 || | || |||| ||||| || |||| | | ||||||| | ||| Sbjct 43692 TCTCCAAGGATCTCCACG----ACTGGAACAACCGTCTGAACAAGGACGAGCAGTACTTC 43747 Query 1455888 ATCAAGCACGTCCTCGCCTTTTTTCGCCGCCAGCGATGGCATCGTGGCCGAGAACCTGGC 1455947 ||| ||| | |||||||| ||| || ||| ||||||||||| ||| ||||| | Sbjct 43748 ATCTCCCACATTCTCGCCTTCTTT-GCTGCCTCTGATGGCATCGTCAACGAAAACCTCGT 43806 Query 1455948 CGGCCGCTTTATGAAAGAGGTCCAATTGCCAGAGGCACGTTTGTTTTACGGGTTCCAGAT 1456007 | ||||| ||||| || | || ||||| || | || ||||| |||||||| Sbjct 43807 TGAGCGCTTCTCAGGCGAGGTGCAGATTCCCGAGGCCCGGTGCTTCTACGGTTTCCAGAT 43866 Query 1456008 CGCCATCGAAAACATCCACTCTGAAACCTACTCGCTCCTGATCGACACCTACGTCAAGGA 1456067 | || ||||||||||| ||||||||||| ||||| || || ||||||||| ||||||| Sbjct 43867 CATGATGGAAAACATCCATTCTGAAACCTATTCGCTGCTAATTGACACCTACATCAAGGA 43926 Query 1456068 CCCGGTCGAGAAGGAC-CACCTCTTTCGCGCCATCGACACGGTGCCGTCGGTGAGGAAAA 1456126 || ||| | || |||| || ||||| ||||| | || | | | | Sbjct 43927 GCC-CTCGCAGCGCACATACCTATTCAATGCCATTGACACTATTCCCTGCATCCGTCGCA 43985 Query 1456127 AGGCCGACTGGGCGATGAAGTGGATCA---ACAAGGAGGGCCTCGACACTTTGCCGAGCG 1456183 ||||||||||||| |||||||||||| |||||||| || || |||||| |||| Sbjct 43986 AGGCCGACTGGGCTCTGAAGTGGATCACCGACAAGGAG----TCTAC-GTTTGCCCAGCG 44040 Query 1456184 GCTCGTCGGCTTTGCCGC-GTCGAGGGCATCTTTTTCTCGGGCAGTTTCTGCGCCATCTT 1456242 || || | |||||| || ||||||||||||||||||||||| ||| | ||||||| Sbjct 44041 CCTAGTTGCCTTTGCTGCTGTCGAGGGCATCTTTTTCTCGGGTGCCTTCGCCTCCATCTT 44100 Query 1456243 TTGGCTCAAGAAGCGCGGCCTCATGCCCGGTCT 1456275 ||||| ||||| || |||||||| ||||| Sbjct 44101 CTGGCTGCGCAAGCGTGGTCTCATGCCTGGTCT 44133 Score = 86.0 bits (94), Expect = 9e-11 Identities = 154/221 (70%), Gaps = 3/221 (1%) Strand=Plus/Plus Query 1456521 AGATCATCGTCGAGGCCGTCGAGATCGAGAAAGAGTTTGTCAGCGAGTCGCTGCCGGTGG 1456580 |||||||| || ||||| | ||||||||| ||||| | | |||| | || || | Sbjct 44241 AGATCATCACTGATGCCGTTGTGATCGAGAAGGAGTTCCTGACCGAGGCTCTTCCCTGCG 44300 Query 1456581 CGCTCATCGGCATGAACGCCACCGCTCATGTGCCAGTACATTGAATTTTGTCGCCGACCG 1456640 || | || ||||||||| || ||| ||||||||||| ||| || || ||||| Sbjct 44301 GTCTGCTAGGAATGAACGCCGAT-CTGATGAAGCAGTACATTGAGTTT-GTTGCGGACCG 44358 Query 1456641 CCTGCTCGCGGCGCTCGGCTGCGGAGAAGCACTACCGGACGGCCAACCCGTTCCCATGGA 1456700 |||||| | || || ||| | || ||| ||||| | | ||||| ||| | | Sbjct 44359 CCTGCTTGTTGCTCTAGGCAAC-GAAAAGGTGTACCGTGCCACAAACCCCTTCGACTTCA 44417 Query 1456701 TGGAGTTGATCTCGCTCGAGGGCAAGACCAACTTTTTCGAG 1456741 ||||| |||||||||| |||||||| ||||| || ||| Sbjct 44418 TGGAGAACATCTCGCTCGGCGGCAAGACTAACTTCTTTGAG 44458 >seq539 Length=40911 Score = 116 bits (128), Expect = 5e-20 Identities = 333/504 (66%), Gaps = 21/504 (4%) Strand=Plus/Minus Query 259682 CACAAGGAGGTCCTCGACGCTGCCATCTGCCACGGCCGAGACTTTGGCTACTCGTACTTT 259741 |||||||| | || ||| |||||||| ||| || ||||| |||| ||||||| Sbjct 18040 CACAAGGATGAGCTGGACTCTGCCATCGTGTACGATCGTGACTTCAACTACCAGTACTTT 17981 Query 259742 GGTCTGGCGAC-CTTGCGCCGGTCCTACCTGACCAAAGTGCGCGATATTGTCGTCGAGCG 259800 || | ||| |||| || | || ||||| ||| | | || | || || || Sbjct 17980 GGCTTTAAGACTCTTGAGC-GTTCTTACCTACTGAAACTCGATGGTAAGATTGTTGAACG 17922 Query 259801 GCCCCAGTATATGCTCATGCGTGTCGCCCTTGGCCATTATGGGTTTGCCGACGTCGACAA 259860 |||||| | ||| | |||||||| || | || ||| |||| ||||| Sbjct 17921 TCCCCAGCACATGATAATGCGTGTTGCTGTGGGT-ATTTGGGGT-----------GACAA 17874 Query 259861 TGCGCTGGAGCACGTGCTCGCCACCTACGAGGCCATGTCGCAGCA-GTTGTTCACCTCA- 259918 | | || | ||||| | |||||| | ||||| ||||| ||| ||||| ||| Sbjct 17873 AG---TCGAACGTGTGCTTGAAACCTACAACTTTATGTC-CAGCAAGTTCTTCAC-TCAC 17819 Query 259919 GCGACGCCCACGCTCTTTAATGCCGGCACGCCGCGCCCGCAGAATTCGTCGTGCTTTCTG 259978 || | || |||||||||||||| || || || | | ||| || |||||||| || Sbjct 17818 GCATCACCTACGCTCTTTAATGCTGGTACCCCCCAGGCTCAGTTGTCTTCGTGCTTCCTA 17759 Query 259979 TTGGACATGAAGGCCGATTCGATCGAGGGCATCTATGACACGCTCAAGCAGTGCGCGCTC 260038 | |||||||| | || ||||||||||| || || || |||||| || || | Sbjct 17758 GTCGACATGAAAGATGACAGCATCGAGGGCATTTACGATACCCTCAAGACTTGTGCCATG 17699 Query 260039 ATCTCCAAGGCGGCCGGCGGCATCGGTTTTGCCGCACACAAGGTGCGCGCCGCGGGCGCC 260098 || |||||| ||| ||||| |||||| | | ||| | || ||| | ||| | Sbjct 17698 ATTTCCAAGATGGCTGGCGGTATCGGTCTCAATGTCCACCGTATTCGTGCCACTGGCTCT 17639 Query 260099 TACGTGGCGGGCACCAACGGCCAGTCCAACGGCCTTGTGCCCATGCTTCGCGTTTTTAAC 260158 ||| | || || || ||||| || ||||| | || |||||||| || ||||| ||| Sbjct 17638 TACATTGCTGGTACTAACGGTACTTCGAACGGTATCGTTCCCATGCTACGTGTTTTCAAC 17579 Query 260159 GACACGGCGCGCTACGTCGACCAG 260182 |||| || || || || |||||| Sbjct 17578 AACACTGCCCGTTATGTTGACCAG 17555 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7177675685167610