Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceratocystis_20albifundus_20[genbank_20GCA_5F000813685.1_202015-01- 02] 1,405 sequences; 26,875,327 total letters Query= NC_026511.1 Length=140913 Score E Sequences producing significant alignments: (Bits) Value seq492 113 4e-20 seq1207 109 5e-19 seq576 95.1 1e-14 >seq492 Length=47418 Score = 113 bits (124), Expect = 4e-20 Identities = 137/184 (74%), Gaps = 2/184 (1%) Strand=Plus/Minus Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604 |||||| || |||||||| |||| || || || | || || |||||||| || ||||| Sbjct 44732 CTCCTTCTGGATGTTGTAGTCGGACAGAGTGCGGCCATCCTCAAGCTGCTTGCCAGCAAA 44673 Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGT 35664 ||||| ||||||||||||| |||| || |||||||||| |||||| ||| | || Sbjct 44672 GATCAAGCGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCCTGGATCTTGGACTTGA-CGT 44614 Query 35665 TG-CCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCA 35723 || | | |||||| || || ||||||| || || || |||||||||| || || | Sbjct 44613 TGTCGATCGTGTCCGAAGACTCGACCTCCAGGGTAATGGTCTTACCCGTCAGGGTCTTGA 44554 Query 35724 CAAA 35727 | || Sbjct 44553 CGAA 44550 >seq1207 Length=77990 Score = 109 bits (120), Expect = 5e-19 Identities = 138/190 (73%), Gaps = 0/190 (0%) Strand=Plus/Minus Query 35547 CCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATA 35606 |||| ||||||||||| || | || ||| || | || ||||||||||| || || || | Sbjct 69259 CCTTCTGAATGTTGTAGTCAGACAGGGTGCGGCCATCCTCCAGCTGCTTGCCAGCGAAGA 69200 Query 35607 TCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTG 35666 ||| ||||||||||||| |||| || |||||||||| ||||| ||| | | | Sbjct 69199 TCAGGCGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCCTGAATCTTAGACTTGACATTGT 69140 Query 35667 CCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAA 35726 | | ||||| || || ||||| | || ||||| |||||||| | || || || | Sbjct 69139 CGATAGTGTCCGAGGACTCAACCTCGAGGGTAATCGTCTTACCCGTAAGGGTCTTGACGA 69080 Query 35727 ATATCTGCAT 35736 | |||||||| Sbjct 69079 AAATCTGCAT 69070 >seq576 Length=37320 Score = 95.1 bits (104), Expect = 1e-14 Identities = 146/206 (71%), Gaps = 2/206 (1%) Strand=Plus/Minus Query 35510 CCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCC 35569 |||||||| | | | ||| | ||| | ||| |||||| || |||||||| |||| | Sbjct 12195 CCACCACGCAGGCGGAGCACTAGATGGAGAGTAGACTCCTTCTGGATGTTGTAGTCGGAC 12136 Query 35570 AAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGA 35629 | ||| || | || || |||||||| || || || || | ||||||||||||| |||| Sbjct 12135 AGGGTGCGGCCATCCTCAAGCTGCTTTCCGGCGAAAATGAGACGCTGCTGGTCCGGAGGA 12076 Query 35630 ACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTG-CCACCGTGTCGCTCGATTCCAC 35688 | | |||||||||| |||||| ||| | |||| | | || || || ||||| Sbjct 12075 ATACCCTCCTTGTCCTGGATCTTAGACTT-AACGTTGTCAATAGTATCCGAAGACTCCAC 12017 Query 35689 CTCCACCGTGATCGTTTTACCCGTCA 35714 ||| | ||||| || || || |||| Sbjct 12016 CTCGAGGGTGATGGTCTTGCCGGTCA 11991 Score = 86.0 bits (94), Expect = 6e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 35510 CCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCC 35569 |||||||| | | || |||||||| | || ||||| || |||||||| || | Sbjct 12935 CCACCACGCAGACGCAGAACCAAATGAAGAGTGGATTCCTTCTGGATGTTGTAGTCAGAG 12876 Query 35570 AAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGA 35629 | ||| || | || || || ||||| || ||||| || | ||||||||||| | ||| Sbjct 12875 AGGGTGCGACCATCCTCGAGTTGCTTTCCAGCAAAGATGAGACGCTGCTGGTCAGGAGGG 12816 Query 35630 ACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTGCCACCGTGTCGCTCGATTCCACC 35689 | | |||||||||| |||||| ||| | | | | | || || || || ||| Sbjct 12815 ATACCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCAATAGTATCCGAAGACTCGACC 12756 Query 35690 TCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCAT 35736 || | || || || || ||||||| || || ||||| || ||||| Sbjct 12755 TCGAGTGTAATAGTCTTGCCCGTCAGGGTCTTGACAAAGATTTGCAT 12709 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 450785682937400