Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceratocystis_20albifundus_20[genbank_20GCA_5F000813685.1_202015-01- 02] 1,405 sequences; 26,875,327 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq539 185 1e-41 >seq539 Length=40911 Score = 185 bits (204), Expect = 1e-41 Identities = 628/973 (65%), Gaps = 4/973 (0%) Strand=Plus/Plus Query 69268 AGTGCTACAGATGCTAGATTACAAACTGCTACCTCATTAGAATTTGCATATTGTATTATC 69327 || || | ||||||||| || || || || ||||| | || ||| | || ||| Sbjct 17067 AGGGCCAGAGATGCTAGGTTGCACACAGCAACCTCGTCAGGGGCACAATACTCGATAATC 17126 Query 69328 TCTGTACATAGATTACTACATTTGATAGTCCCCAGATTTTGCTGATTACTCTTTTTGTTA 69387 || || || || || | ||| || || ||||||| |||||| ||||| ||| Sbjct 17127 TCAGTGCACAGGTTTGAGCTGCGGATGGTACCTAGATTTTTCTGATTGCTCTTGCGGTTG 17186 Query 69388 CAGGCGTCCTTGTAAAGAATAAACGGAGTACCAGTTTCAATCTGAGATTCGATAATAGAT 69447 || ||| |||||||| || || || | ||||| ||| |||| | || | ||| | Sbjct 17187 CAATGGTCTTTGTAAAGCATGAAAGGGTTGCCAGTCTCAGTCTGGGCCTCCAGAATGGCA 17246 Query 69448 TTCCAAACGACCCTAGCATTTATTACGGTCTTGTAACGCTTCTCTTTTTCATATTGTGTA 69507 | ||| | | || || | || || || ||| || || || | | | Sbjct 17247 TACCACAGCTTCTGGGCCTTGACAACCGTGCGACCGCGACCCTCCTTCTCGTACTTTTCA 17306 Query 69508 TATAGCCGTTCGAATTCATCTCCCCAAACATCATCCAATCCAGGACATTCATTTGGACAC 69567 || || || || || || || | ||| |||| || || |||||||| || ||| Sbjct 17307 TACAGAGCCTCAAACTCTTCGCCATAGCAATCCGCCAAGCCGGGGCATTCATTGGGGCAC 17366 Query 69568 ATCAATGACCACACATCATCATCCTTAACTCGTTTCATAAATAGATCGGGAATCCAAAGA 69627 || | | ||| | |||| | || ||| || ||||| || | ||| ||||| || Sbjct 17367 ATGAGAGTCCAGTCCTCATTTTTCTCAACACGCTTCATGAACAAGTCGCAGATCCACAGG 17426 Query 69628 GCTATAAAGAGATCTCTGGTTCTATTTTCTTCATTTCC-TGTAttttttttAAGATCGAG 69686 || | || || || | | | |||||| ||||| || | || ||| ||||| Sbjct 17427 GCCAAGAATAGGTCACGAGCACGGACTTCTTCCTTTCCGTGGTTCTTGCGCAAG-TCGAG 17485 Query 69687 AAACTCCATAATATCAGAATGCCATGGTTCTAGATATATCGCCATGACTCCCGGTCGTTT 69746 ||||| | | ||||| ||||||||| || || || || || | | |||| ||||| || Sbjct 17486 GAACTCGAAGACATCAGCATGCCATGGCTCGAGGTAAATGGCAAAGGCTCCAGGTCGCTT 17545 Query 69747 ATTTCCTCCCTGATCTATGTATCTGGCAGTGTTATTATAGACTCTCAGCATCGGAATAAT 69806 ||||| ||||| || | || | ||||||||| || | || | ||||| |||| || Sbjct 17546 GTTTCCACCCTGGTCAACATAACGGGCAGTGTTGTTGAAAACACGTAGCATGGGAACGAT 17605 Query 69807 ACCATTAGATTTACCATTTGTTCCAGAAATATAACTTCCTCTTGCGCGAATATTACTAAT 69866 ||| || || |||| || || |||| ||| ||| || | || |||||| | Sbjct 17606 ACCGTTCGAAGTACCGTTAGTACCAGCAATGTAAGAGCCAGTGGCACGAATACGGTGGAC 17665 Query 69867 AGATAGACCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAACGTTTCAATGTGTCATA 69926 | ||||| || || || ||||| || || || | |||||| || | || || || Sbjct 17666 ATTGAGACCGATACCGCCAGCCATCTTGGAAATCATGGCACAAGTCTTGAGGGTATCGTA 17725 Query 69927 TATACCCTCTATGCTATCATCTATCATGTTAAGAAGAAAACAGCTAGACATTTGATGATG 69986 || ||||| ||||| |||||| |||||| | || || || ||||| ||| || Sbjct 17726 AATGCCCTCGATGCTGTCATCTTTCATGTCGACTAGGAAGCACGAAGACAACTGAGCCTG 17785 Query 69987 TATAGTTCCCGCATTAAATAATGTAGGAGATGCGTGAGTGAACCATTTTTCAGAAAGCAG 70046 || || |||||||| | ||||| |||||||||||||| | || || | | Sbjct 17786 GGGGGTACCAGCATTAAAGAGCGTAGGTGATGCGTGAGTGAAGAACTTGCTGGACATAAA 17845 Query 70047 ATTGTATGTTTCAATAGCTGATTCTA-TATCCCACTGATGAATTCCTATCGCGACACGCA 70105 ||||| ||||||| | ||| | | | ||| ||| || | || ||||||| Sbjct 17846 GTTGTAGGTTTCAAGCACACGTTCGACTTTGTCAC-CCCAAATACCCACAGCAACACGCA 17904 Query 70106 TCAACATATGCTGAGGTCGTTCTACCGTTTTATTATTTATTTTCAACAGGTATGATTTTT 70165 | | ||| ||||| || ||||| || | ||| || | ||||| ||||| || | Sbjct 17905 TTATCATGTGCTGGGGACGTTCAACAATCTTACCATCGAGTTTCAGTAGGTAAGAACGCT 17964 Query 70166 CCAGAGTTTTAAACCCAAAATAGTTGTATGAAAAGTCTCTTTCGTAAATAATAACAGAAT 70225 | ||||| ||||| ||||| || | ||| ||||| | ||||| | || |||| | Sbjct 17965 CAAGAGTCTTAAAGCCAAAGTACTGGTAGTTGAAGTCACGATCGTACACGATGGCAGAGT 18024 Query 70226 TTAGTTTATCCTT 70238 || | |||||| Sbjct 18025 CCAGCTCATCCTT 18037 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 686896736164200