Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ceratocystis_20albifundus_20[genbank_20GCA_5F000813685.1_202015-01-
02] 1,405 sequences; 26,875,327 total letters
Query= NC_027213.1
Length=214699
Score E
Sequences producing significant alignments: (Bits) Value
seq539 185 1e-41
>seq539
Length=40911
Score = 185 bits (204), Expect = 1e-41
Identities = 628/973 (65%), Gaps = 4/973 (0%)
Strand=Plus/Plus
Query 69268 AGTGCTACAGATGCTAGATTACAAACTGCTACCTCATTAGAATTTGCATATTGTATTATC 69327
|| || | ||||||||| || || || || ||||| | || ||| | || |||
Sbjct 17067 AGGGCCAGAGATGCTAGGTTGCACACAGCAACCTCGTCAGGGGCACAATACTCGATAATC 17126
Query 69328 TCTGTACATAGATTACTACATTTGATAGTCCCCAGATTTTGCTGATTACTCTTTTTGTTA 69387
|| || || || || | ||| || || ||||||| |||||| ||||| |||
Sbjct 17127 TCAGTGCACAGGTTTGAGCTGCGGATGGTACCTAGATTTTTCTGATTGCTCTTGCGGTTG 17186
Query 69388 CAGGCGTCCTTGTAAAGAATAAACGGAGTACCAGTTTCAATCTGAGATTCGATAATAGAT 69447
|| ||| |||||||| || || || | ||||| ||| |||| | || | ||| |
Sbjct 17187 CAATGGTCTTTGTAAAGCATGAAAGGGTTGCCAGTCTCAGTCTGGGCCTCCAGAATGGCA 17246
Query 69448 TTCCAAACGACCCTAGCATTTATTACGGTCTTGTAACGCTTCTCTTTTTCATATTGTGTA 69507
| ||| | | || || | || || || ||| || || || | | |
Sbjct 17247 TACCACAGCTTCTGGGCCTTGACAACCGTGCGACCGCGACCCTCCTTCTCGTACTTTTCA 17306
Query 69508 TATAGCCGTTCGAATTCATCTCCCCAAACATCATCCAATCCAGGACATTCATTTGGACAC 69567
|| || || || || || || | ||| |||| || || |||||||| || |||
Sbjct 17307 TACAGAGCCTCAAACTCTTCGCCATAGCAATCCGCCAAGCCGGGGCATTCATTGGGGCAC 17366
Query 69568 ATCAATGACCACACATCATCATCCTTAACTCGTTTCATAAATAGATCGGGAATCCAAAGA 69627
|| | | ||| | |||| | || ||| || ||||| || | ||| ||||| ||
Sbjct 17367 ATGAGAGTCCAGTCCTCATTTTTCTCAACACGCTTCATGAACAAGTCGCAGATCCACAGG 17426
Query 69628 GCTATAAAGAGATCTCTGGTTCTATTTTCTTCATTTCC-TGTAttttttttAAGATCGAG 69686
|| | || || || | | | |||||| ||||| || | || ||| |||||
Sbjct 17427 GCCAAGAATAGGTCACGAGCACGGACTTCTTCCTTTCCGTGGTTCTTGCGCAAG-TCGAG 17485
Query 69687 AAACTCCATAATATCAGAATGCCATGGTTCTAGATATATCGCCATGACTCCCGGTCGTTT 69746
||||| | | ||||| ||||||||| || || || || || | | |||| ||||| ||
Sbjct 17486 GAACTCGAAGACATCAGCATGCCATGGCTCGAGGTAAATGGCAAAGGCTCCAGGTCGCTT 17545
Query 69747 ATTTCCTCCCTGATCTATGTATCTGGCAGTGTTATTATAGACTCTCAGCATCGGAATAAT 69806
||||| ||||| || | || | ||||||||| || | || | ||||| |||| ||
Sbjct 17546 GTTTCCACCCTGGTCAACATAACGGGCAGTGTTGTTGAAAACACGTAGCATGGGAACGAT 17605
Query 69807 ACCATTAGATTTACCATTTGTTCCAGAAATATAACTTCCTCTTGCGCGAATATTACTAAT 69866
||| || || |||| || || |||| ||| ||| || | || |||||| |
Sbjct 17606 ACCGTTCGAAGTACCGTTAGTACCAGCAATGTAAGAGCCAGTGGCACGAATACGGTGGAC 17665
Query 69867 AGATAGACCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAACGTTTCAATGTGTCATA 69926
| ||||| || || || ||||| || || || | |||||| || | || || ||
Sbjct 17666 ATTGAGACCGATACCGCCAGCCATCTTGGAAATCATGGCACAAGTCTTGAGGGTATCGTA 17725
Query 69927 TATACCCTCTATGCTATCATCTATCATGTTAAGAAGAAAACAGCTAGACATTTGATGATG 69986
|| ||||| ||||| |||||| |||||| | || || || ||||| ||| ||
Sbjct 17726 AATGCCCTCGATGCTGTCATCTTTCATGTCGACTAGGAAGCACGAAGACAACTGAGCCTG 17785
Query 69987 TATAGTTCCCGCATTAAATAATGTAGGAGATGCGTGAGTGAACCATTTTTCAGAAAGCAG 70046
|| || |||||||| | ||||| |||||||||||||| | || || | |
Sbjct 17786 GGGGGTACCAGCATTAAAGAGCGTAGGTGATGCGTGAGTGAAGAACTTGCTGGACATAAA 17845
Query 70047 ATTGTATGTTTCAATAGCTGATTCTA-TATCCCACTGATGAATTCCTATCGCGACACGCA 70105
||||| ||||||| | ||| | | | ||| ||| || | || |||||||
Sbjct 17846 GTTGTAGGTTTCAAGCACACGTTCGACTTTGTCAC-CCCAAATACCCACAGCAACACGCA 17904
Query 70106 TCAACATATGCTGAGGTCGTTCTACCGTTTTATTATTTATTTTCAACAGGTATGATTTTT 70165
| | ||| ||||| || ||||| || | ||| || | ||||| ||||| || |
Sbjct 17905 TTATCATGTGCTGGGGACGTTCAACAATCTTACCATCGAGTTTCAGTAGGTAAGAACGCT 17964
Query 70166 CCAGAGTTTTAAACCCAAAATAGTTGTATGAAAAGTCTCTTTCGTAAATAATAACAGAAT 70225
| ||||| ||||| ||||| || | ||| ||||| | ||||| | || |||| |
Sbjct 17965 CAAGAGTCTTAAAGCCAAAGTACTGGTAGTTGAAGTCACGATCGTACACGATGGCAGAGT 18024
Query 70226 TTAGTTTATCCTT 70238
|| | ||||||
Sbjct 18025 CCAGCTCATCCTT 18037
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 686896736164200
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |