Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceratocystis_20albifundus_20[genbank_20GCA_5F000813685.1_202015-01- 02] 1,405 sequences; 26,875,327 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq539 150 2e-31 seq431 95.1 2e-14 seq564 87.8 2e-12 seq1 87.8 2e-12 >seq539 Length=40911 Score = 150 bits (166), Expect = 2e-31 Identities = 821/1295 (63%), Gaps = 17/1295 (1%) Strand=Plus/Plus Query 110706 GGTAGATGTTTGTTGTGTATGGTTCAAAGCATTCATTATTACCCAAGATTTGTGCGGTGG 110765 |||||||||| | |||||| ||||| ||||| ||||| || |||| || || | ||| Sbjct 16540 GGTAGATGTTGGATGTGTAGGGTTCGAAGCACTCATTGTTGCCCAGAATCTGCGATGTGC 16599 Query 110766 AGGCTGTTGGCATTGGTGCCATCAAAAGACTGTTACGAAGACCCTTCTCCTTGATGCGTT 110825 |||||| ||||| ||||| | || |||| || || | ||| | || || || | Sbjct 16600 TGGCTGTAGGCATGGGTGCAACCAGAAGAGAATTGCGTACACCATGCTGTTTAATCTTCT 16659 Query 110826 CCTTGAGAACATCCCAGTCGTA--GTTGAGCTTGGTTTCACCTTCCCACATGTCAAACTG 110883 |||| ||| | |||||| | | | | || || |||| | ||||||| |||||||| Sbjct 16660 CCTTCAGAGAAGTCCAGTCCCACAGGTCA-CTAGGAGTCACAT-CCCACATATCAAACTG 16717 Query 110884 AAGCACCCCTTGGGACGCGGGAGAACCCTCAAAGGTTTCATAGGAACCTTGGGCTTCAGC 110943 | | |||||||| | || ||||||||| ||||| || | ||| | | | || Sbjct 16718 CAAGATACCTTGGGAGACAGGGGAACCCTCATAGGTTGAGTAAGTACCCTCCGTCTGGGC 16777 Query 110944 CAATTCACAGCTCGCCTCCAGGGATGCGTGATACATGGTTTCAAAGATACGAGCATTCAT 111003 | ||| || || | ||||| || ||||||||||| || | || | Sbjct 16778 GATTTCCATTGAAGCAGTTAGTGCGGCGTGGTAGATGGTTTCAAAAATCTGTTTGTTAAG 16837 Query 111004 CTCCTTGGCTTCATCTGAATC-AAATGCGTAGCGGCACAAAATAAATACATCCGCGAGAC 111062 || ||||| || || ||| || | |||| || || |||| || | | Sbjct 16838 CTGGCGTGCTTCGGGGGATTCGAAAGGCAT-GCGGAGAGCAAGGAAAGCATCAGCCAAGC 16896 Query 111063 CTTGAACACCCAAACCAATAGGTCTGTGTCGCATATTAGACTTTCGCGCAGTCTCAACGG 111122 | || ||||| | |||||| || | ||| ||||| || || | || || || | Sbjct 16897 CCTGTACACCAACACCAATGGGACGGTGGCGCATGTTGCTGTTGTGAGCTTCCTGGACAG 16956 Query 111123 GATAAAAATTTCTGTCAATGACTCGGTTTAGATTTTTGGTAACAATCTTTGTGATTTCAT 111182 | || ||| ||||||| |||||||| || ||||| | |||| ||| | Sbjct 16957 GGTAGTGATTCACATCAATGATGCGGTTTAGGTTGCGAACAACAACTTGAGTGACTTCGT 17016 Query 111183 GAAGTTTTTCATAATCAAAAGTGCGAGTCTCTTCATTGACATACTTTGGAAGGGCGATTG 111242 | || |||| | | ||| | | | | | | || | |||||||| | | Sbjct 17017 GTAGCTTTTTAAAGTCATACTCACCCTTGTTGTAGTCCACGAAGGAAGGAAGGGCCAGAG 17076 Query 111243 ATGCCAAATTGCAAACAGCCGTCTCATCCTTATCTGTGTACTCTAAAATTTCTGTACATA 111302 |||| | ||||| ||||| ||| || | ||||| | ||| || || || | Sbjct 17077 ATGCTAGGTTGCACACAGCAACCTCGTCAGGGGCACAATACTCGATAATCTCAGTGCACA 17136 Query 111303 AGTTGGAACTCTTAATCGTCCCCAAATTCTTTTGGTTACTCTTCTTGTTGCACGCATCCT 111362 ||| || || || || || | ||| || || || ||||| |||||| || | Sbjct 17137 GGTTTGAGCTGCGGATGGTACCTAGATTTTTCTGATTGCTCTTGCGGTTGCAATGGTCTT 17196 Query 111363 TGTAGAGCATGTAGGGCGTCCCCGTCTCCGTCTGTGATTTGAGAATAGCCTTCCAAA-CA 111421 |||| |||||| | || | || ||||| ||||| | | ||||| || | ||| | | Sbjct 17197 TGTAAAGCATGAAAGGGTTGCCAGTCTCAGTCTGGGCCTCCAGAATGGCATACCACAGCT 17256 Query 111422 TCGGCGGCTGGTACAATGGCGTTGGCCCGTCCCTCCGCCTCGTACTTTGTGTAGAGGGCT 111481 || | | || | |||| | | | || |||||| |||||||||| || || || Sbjct 17257 TCTGGGCCTTG-ACAACCGTGCGACCGCGACCCTCCTTCTCGTACTTTTCATACAGAGCC 17315 Query 111482 TCAAACTCCTCACCCACCGCG-TCGGAGAGACCTGGTGCCTTGTCTGGA-CAGAAAAGAG 111539 |||||||| || || | || || | | || || || || ||| || | |||| Sbjct 17316 TCAAACTCTTCGCC-ATAGCAATCCGCCAAGCCGGG-GCATTCATTGGGGCACATGAGAG 17373 Query 111540 ACCATTGACCACCTTCCTCAACCCGCTTCATGAAAAGGTCTGGAATCCACAGGGATGAAA 111599 ||| | || || |||||| ||||||||||| | ||| |||||||||| | | Sbjct 17374 TCCAGTCCTCATTTTTCTCAACACGCTTCATGAACAAGTCGCAGATCCACAGGGCCAAGA 17433 Query 111600 AGAGATCTCTA-CACCGAGCCTCTTCGTCACCTTGGTTGAGTCGTAACTCAAGGAACTCC 111658 | || || | | ||| || | ||||| | || ||||| || || || |||||||| Sbjct 17434 ATAGGTCACGAGCACGGA-CTTCTTCCTTTCCGTGGTTCTTGCGCAAGTCGAGGAACTCG 17492 Query 111659 ATGATATCCGCGTGCCATGGCTCAAGATAGACTGCGATAGATCCCTTTCG---ACGCCCA 111715 | || ||| || ||||||||||| || || | || | | ||| ||| ||| Sbjct 17493 AAGACATCAGCATGCCATGGCTCGAGGTAAATGGCAAAGGCTCCAGGTCGCTTGTTTCCA 17552 Query 111716 GCTTGATTTACATAGCGCGCTGTGGCGTTAAATACGCGAAGCATTGGAATAATACCATCT 111775 | || | ||||| || || ||| ||| || || || ||||| |||| ||||| | Sbjct 17553 CCCTGGTCAACATAACGGGCAGTGTTGTTGAAAACACGTAGCATGGGAACGATACCGTTC 17612 Query 111776 GATTGACCATTTGTCCCCCGAATACGAGATTTATTGGCTCTCACATCATGGATGTGCATC 111835 || ||| || || || ||| ||| | |||| | | | |||| | | Sbjct 17613 GAAGTACCGTTAGTACCAGCAATGTAAGAGCCAGTGGCACGAATACGGTGGACATTGAGA 17672 Query 111836 CCAATACCCCCAGCCCACTTTGAGATTTGCGCACACTCCGTAAGAGTTCCATAGATACCG 111895 || ||||| |||||| ||| || || ||||| | | || || | || || || Sbjct 17673 CCGATACCGCCAGCCATCTTGGAAATCATGGCACAAGTCTTGAGGGTATCGTAAATGCCC 17732 Query 111896 TTGATTGAGTCCTCCTTGTTGGCGATAAGGAAGCAACTGGACATCTGCGGTCTTGGTGTA 111955 | ||| ||| || || || ||| |||||||| |||| ||| | || ||| Sbjct 17733 TCGATGCTGTCATCTTTCATGTCGACTAGGAAGCACGAAGACAACTGAGCCTGGGGGGTA 17792 Query 111956 CCAGCATTGAAGAGGGTTGGTGTTGCGTGAATGAA 111990 |||||||| ||||| || |||| ||||||| |||| Sbjct 17793 CCAGCATTAAAGAGCGTAGGTGATGCGTGAGTGAA 17827 >seq431 Length=155802 Score = 95.1 bits (104), Expect = 2e-14 Identities = 338/522 (65%), Gaps = 11/522 (2%) Strand=Plus/Minus Query 122659 GCAAACTCCTGGTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGACCT 122718 ||||| || ||| || ||||| || || ||||| || || ||||||||| ||||| Sbjct 44187 GCAAAGTCGGTGTGCAGGCCCTCGTCACGAGAAATGAGCTCGTTTGAGAAGGTCAGACCA 44128 Query 122719 GGCATGAGACCCCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATA 122778 ||||||||||| ||||| || ||| | || | | ||| | || ||||| ||||| Sbjct 44127 GGCATGAGACCACGCTTGCGCAGCCAGAAGATGGAGGCGAAGGCACCCGAGAAAAAGATG 44068 Query 122779 CCCTCCACACACGCAAACGCAAAAAGGCGTTCGGCGAAGGAGCGAGACT--TTG-CATCA 122835 ||||| ||| ||||| |||| ||||| | ||| || | ||||| ||| | Sbjct 44067 CCCTCGACAGCAGCAAAGGCAACTAGGCGCTGGGCAAACG---TAGACTCCTTGTCGGTG 44011 Query 122836 AACCATTTCATTGCCCATTTCGCCTTCTTCTCAATACATGGTACAGTTTGGATGGCTTCA 122895 | ||| |||| ||||| | ||||| || || || | ||| | ||||| | Sbjct 44010 ATCCACTTCAGAGCCCAGTCGGCCTTGCGACGGATGCAGGGAATAGTGTCAATGGCATTG 43951 Query 122896 AATAACTGCTTCTTTTCAGATCCATCCTTAATGTATTTGTCAATCAATTTTGAATATGTT 122955 |||| | | | || ||||| ||||| ||||||| | ||||| ||| Sbjct 43950 AATAGGTATGTGCGCTGCGAGGGCTCCTTGATGTAGGTGTCAATTAGCAGCGAATAGGTT 43891 Query 122956 TCGCCATGAACCATTT-CATTATGGCATTGATATGCGTAGAATGAGCGCGCTTCGCTTAT 123014 || ||| | ||| ||| ||| | || | ||||||| | || || ||| || Sbjct 43890 TCAGAATGGATGTTTTCCATCATGATCTGGA-AACCGTAGAAGCACCGGGCCTCGGGAAT 43832 Query 123015 CTGAACCTCATCCGCAAAATTGTTATTGATATTCTCAAAAACAATTCCATCGGACCCAGC 123074 ||| ||||| | | || | | || || || || || ||||| || |||| Sbjct 43831 CTGCACCTCGCCTGAGAAGCGCTCAACGAGGTTTTCGTTGACGATGCCATCAGAGGCAGC 43772 Query 123075 AAAGAATGCCAGGATGTACTTTATGAATTTCTTTTCATTTTCATTCA---GGGTCTTCCA 123131 |||||| || || |||| ||||| | || || | | |||| || | ||||| Sbjct 43771 AAAGAAGGCGAGAATGTGGGAGATGAAGTACTGCTCGTCCTTGTTCAGACGGTTGTTCCA 43712 Query 123132 GTCGTCAAGATCTTTGGACAAATCAACTTCTTCCGCAGTCCA 123173 ||||| ||||| ||||| | ||||| ||||| |||||||| Sbjct 43711 GTCGTGGAGATCCTTGGAGAGATCAATCTCTTCAGCAGTCCA 43670 >seq564 Length=132701 Score = 87.8 bits (96), Expect = 2e-12 Identities = 210/313 (67%), Gaps = 10/313 (3%) Strand=Plus/Minus Query 11630 GCATCAATCTCATCAATGAAGACAATACATGGTTGATTTTCGCGGGCGATTTCAAAGAGA 11689 ||||||||||| ||||| |||| || ||||| || | ||| || | |||| ||| Sbjct 130105 GCATCAATCTCGTCAATAAAGATGATGCATGGCGCGTTCTTGCGCGCCGTAGCAAAAAGA 130046 Query 11690 TCGCGAACCCTTTTGGCACCCACACCAACAAACATCTCCACAAAGT--TTGCGGCAGAGC 11747 || || || | | ||||| || ||||||||||| ||||| | || || || | Sbjct 130045 TCACGCACTCGCGACGGGCCCACGCCGACAAACATCTCGACAAACTCGGAGCCGCTGA-C 129987 Query 11748 ACTGGATGAATGGGACATTTGATTCACCCGCGATGGCTCGGGCGAGGAGGGTCTTTCCCG 11807 ||| || ||| || || ||| || || || |||| || || || ||||| |||| Sbjct 129986 ACT-GAAGAAGGGAACGCCTGACTCGCCAGCCGTGGCCTTTGCTAGCAGCGTCTTGCCCG 129928 Query 11808 TACCTGGCTTACCCGCGAGAAGGGCGCCTCGGGGGATCTTGGCACC---ACTTCCAAAAT 11864 | || || |||| || | ||||| || |||||||||||||| || |||| | Sbjct 129927 TTCCCGGGGGGCCCGATAGGATAGCGCCACGCGGGATCTTGGCACCCAGACGCACAAACT 129868 Query 11865 ATCTCTCGGGTTGCTTGAGAAAATCCACAATCTCTTCAAGTTCATCTTTGGCCGCGTCAA 11924 | ||||| | |||||| || | ||||| ||| | || | |||||| | || | Sbjct 129867 ---TTTCGGGCTTCTTGAGGAACTGCACAAACTCCATGATCTCGACCTTGGCCTCATCCA 129811 Query 11925 TCCCCTCAACATC 11937 |||| | ||||| Sbjct 129810 TCCCAGCCACATC 129798 >seq1 Length=236255 Score = 87.8 bits (96), Expect = 2e-12 Identities = 132/188 (70%), Gaps = 0/188 (0%) Strand=Plus/Minus Query 164658 GGTGCGGGTGTTATTGATCCCGACTATACAGGTGAAGTCAAAGTCGTTCTCTTCAATCAC 164717 || || ||||| |||||| |||| || ||||| ||||| || | | ||||||||| Sbjct 196554 GGAGCTGGTGTCATTGATGCCGATTACCGTGGTGAGGTCAAGGTTCTCTTGTTCAATCAC 196495 Query 164718 GGAGACAAAGACTTTGAGGTAAAGAAAGGGGATCGCATCGCACAACTTGTCCTTGAGCGC 164777 ||| ||||| ||||| || | || || |||||||| || || || | || || Sbjct 196494 CACGACGCCGACTTCGAGGTCAAAGAGGGCGACCGCATCGCTCAGCTAGTGTTGGAACGT 196435 Query 164778 TGTGAAACACCCGATGTGGAGGAAATTGGTGTTCTTGAAGAGACGGAGAGAGGTGCGGGT 164837 || ||| |||||||| | || ||| |||||||||||||| | | || || ||| Sbjct 196434 ATTGTAACTCCCGATGTTGTCGAGGTTGCTGTTCTTGAAGAGAGTGTCCGTGGAGCTGGT 196375 Query 164838 GGATTTGG 164845 || ||||| Sbjct 196374 GGTTTTGG 196367 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 628020970188000