Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ceratocystis_20albifundus_20[genbank_20GCA_5F000813685.1_202015-01-
02] 1,405 sequences; 26,875,327 total letters
Query= NC_028093.1
Length=182309
Score E
Sequences producing significant alignments: (Bits) Value
seq539 201 1e-46
seq431 107 2e-18
seq564 84.2 3e-11
>seq539
Length=40911
Score = 201 bits (222), Expect = 1e-46
Identities = 900/1398 (64%), Gaps = 41/1398 (3%)
Strand=Plus/Minus
Query 104222 CCACAGTACATGTTCATGCGCGTGGCCATCGGTATTCATGGGGAAGACA---TTGATTCT 104278
|| ||| ||||| | ||||| || || | |||||| ||||| |||| | || |
Sbjct 17920 CCCCAGCACATGATAATGCGTGTTGCTGTGGGTATT--TGGGGT-GACAAAGTCGAACGT 17864
Query 104279 GTCTTGGAGACATACGACAAGATGTCC--CAAGGTATGTTCATTCACGCAACACCAACCC 104336
|| | || || ||| || |||||| |||| | | ||| ||||||| |||| || |
Sbjct 17863 GTGCTTGAAACCTACAACTTTATGTCCAGCAAGTTCT--TCACTCACGCATCACCTACGC 17806
Query 104337 TCTTCAATGCTGGTACACCAAGACCCCAAATGTCCAGTTGCTTCCTTATCGCCAACAAGG 104396
|||| ||||||||||| || | || |||| |||||||| ||| || || |
Sbjct 17805 TCTTTAATGCTGGTACCCCCCAGGCTCAGTTGTCTTCGTGCTTCCTAGTCGACATGAAAG 17746
Query 104397 AGGACTCAATCAACGGTATCTATGGAACTCTTACGGAGTGTGCGCAAATCTCAAAGTGGG 104456
| ||| ||| | || || || | || || | | ||||| || || ||| ||
Sbjct 17745 ATGACAGCATCGAGGGCATTTACGATACCCTCAAGACTTGTGCCATGATTTCCAAGATGG 17686
Query 104457 CTGGGGGTATTGGGATGCACATCCATGATGTGAGAGCCAATAAATCTCGTATTCGGGGGA 104516
|||| ||||| || | | |||| | | | |||| | ||| ||| || |
Sbjct 17685 CTGGCGGTATCGGTCTCAATGTCCACCGTATTCGTGCCACTGGCTCTTACATTGCTGGTA 17626
Query 104517 CAAATGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGCGCT 104576
| || ||| || | ||||| |||| ||||| || || || ||| ||| || || |
Sbjct 17625 CTAACGGTACTTCGAACGGTATCGTTCCCATGCTACGTGTTTTCAACAACACTGCCCGTT 17566
Query 104577 ATGTAAATCAAGCTGGGCGT---CGAAAGGGATCTATCGCAGTCTATCTTGAGCCATGGC 104633
|||| | || | ||| ||| ||| | | || | || || ||||||||||
Sbjct 17565 ATGTTGACCAGGGTGGAAACAAGCGACCTGGAGCCTTTGCCATTTACCTCGAGCCATGGC 17506
Query 104634 ACGCGGATATCATGGAGTTCCTTGAGTTGCGTCTCAACCAAGGTGACGAGGAGGCGCGGT 104693
| || ||| || | |||||||| || ||||| ||||| || | || || | || |
Sbjct 17505 ATGCTGATGTCTTCGAGTTCCTCGACTTGCGCAAGAACCACGGAAAGGAAGAAGTCCG-T 17447
Query 104694 GC-CGCGATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTTCATGAAGAGAGTTGAGGAG 104752
|| || || || |||| || || ||||| || | ||||||||| | |||||| |
Sbjct 17446 GCTCGTGACCTATTCTTGGCCCTGTGGATCTGCGACTTGTTCATGAAGCGTGTTGAGAAA 17387
Query 104753 AGTGGCAATTGGTCTCTCTTTTGTCCAGAC-AAGGCACCTGGTCTCTCCGATGCCGTGGG 104811
| || | ||| ||||| | || || | || || || | | | | ||| | ||
Sbjct 17386 AATGAGGACTGGACTCTCATGTGCCCCAATGAATGCCCCGGCT-TGGCGGATTGCTATGG 17328
Query 104812 TGAGGAGTTTGAAGCCCTTTACACAAAGTACGAGGAAGAAGGTCGGGCGACTGCGACGGT 104871
|| |||||||| || || || |||||||||| | || ||||| | | | || |||||
Sbjct 17327 CGAAGAGTTTGAGGCTCTGTATGAAAAGTACGAGAAGGAGGGTCGCG-GTC-GC-ACGGT 17271
Query 104872 G--CCAGCTGCCGATG-TGTGGAAAGCTATTCTCAAGTCTCAAACCGAGACTGGTACACC 104928
| || | || | ||||| | || ||||| || | || || |||||||| | ||
Sbjct 17270 TGTCAAGGCCCAGAAGCTGTGGTATGCCATTCTGGAGGCCCAGACTGAGACTGGCAACCC 17211
Query 104929 ATACATGCTTTACAAAGACGCCTGTAACCAAAAGAGTAATCAAAAGAATTTGGGTGTGAT 104988
| |||||||||||||||| || |||| ||||| ||||| || ||| | ||| ||
Sbjct 17210 TTTCATGCTTTACAAAGACCATTGCAACCGCAAGAGCAATCAGAAAAATCTAGGTACCAT 17151
Query 104989 CAAGAGTTCCAATCTCTGTACAGAAATCTTGGAATTTACAGACAAAGATGAGACGGCTGT 105048
| || || || || || || || || | || | | | | || ||| |||||
Sbjct 17150 CCGCAGCTCAAACCTGTGCACTGAGATTATCGAGTATTGTGCCCCTGACGAGGTTGCTGT 17091
Query 105049 GTGTAACCTCGCATCAATCGCTCTCCCCAAGTATGTGGATCCAGAGACAAAG--ACATTT 105106
||| ||||| ||||| | || || || | ||||| | | | |||| | | |
Sbjct 17090 GTGCAACCTAGCATCTCTGGCCCTTCCTTCCTTCGTGGA-CTACA-ACAAGGGTGAGTAT 17033
Query 105107 GATTATGAAAAACTCCACGAAGTTACGAAAACTGTCACCAAAAACCTAAACAGAGTTATT 105166
|| | | |||| || |||||||| || || ||| ||||||||| | | |||
Sbjct 17032 GACTTTAAAAAGCTACACGAAGTCACTCAAGTTGTTGTTCGCAACCTAAACCGCATCATT 16973
Query 105167 GATAGAAATTTTTACCCCGTTGAGACTGCTCGTAAATCTAATATGAGACACCGTCCAATT 105226
||| ||| ||||| || || |||| || || ||| | |||||||| |||
Sbjct 16972 GATGTGAATCACTACCCTGTCCAGGAAGCTCACAACAGCAACATGCGCCACCGTCCCATT 16913
Query 105227 GGTCTCGGTGTTCAGGGTCTCGCGGATGTATTCATTCTTTGTCGCCACGCATTT-GATTC 105285
||| | ||||| ||||| | || |||| ||| || | || || || ||| || ||
Sbjct 16912 GGTGTTGGTGTACAGGGCTTGGCTGATGCTTTCCTT-GCTCTCCGCATGCCTTTCGAATC 16854
Query 105286 CGACGAAGCGAAGGAAATCAATGCGCGCATATTTGAGACCATGTATCACGCCGCTCTTGA 105345
| |||||| | | || | || ||||| ||||| || |||||||| ||
Sbjct 16853 CCCCGAAGCACGCCAGCTTAACAAACAGATTTTTGAAACCATCTACCACGCCGCACTAAC 16794
Query 105346 GGCGAGTTCA---GAGTTGGCAGAGGTTGATGGTCCATATGAAACCTTTGAGGGTTCTCC 105402
|| |||| || | || || || ||| | || ||||| ||||||||| ||
Sbjct 16793 TGC---TTCAATGGAAATCGCCCAGACGGAGGGTACTTACTCAACCTATGAGGGTTCCCC 16737
Query 105403 AGCTTCACAAGGGGTGCTTCAATTTGATATGTGGGAAGGTGAGACCAAGCTTCAC---TA 105459
| || ||||| | | || ||||||||||||| | |||| || || | || |
Sbjct 16736 TGTCTCCCAAGGTATCTTGCAGTTTGATATGTGGG-ATGTGACTCCTAG--TGACCTGTG 16680
Query 105460 CGACTGGGAAGCTCTCAAGGAACGCATCAAGGAGAAGGGTCTTCGTAACAGTCTCCTCAT 105519
|||||| |||| ||||| || || || | ||| | || || ||| || |
Sbjct 16679 GGACTGGACTTCTCTGAAGGAGAAGATTAAACAGCATGGTGTACGCAATTCTCTTCTGGT 16620
Query 105520 GGCTCCAATGCCAACAGCCTCCACCGCACAAATCTTGGGTAATAATGAATGCTTTGAACC 105579
|| || ||||| |||||| ||| | || || |||| || ||||| ||||| |||||
Sbjct 16619 TGCACCCATGCCTACAGCCAGCACATCGCAGATTCTGGGCAACAATGAGTGCTTCGAACC 16560
Query 105580 CTACACGACGAACATCTA 105597
|||||| | ||||||||
Sbjct 16559 CTACACATCCAACATCTA 16542
>seq431
Length=155802
Score = 107 bits (118), Expect = 2e-18
Identities = 149/206 (72%), Gaps = 6/206 (3%)
Strand=Plus/Plus
Query 94753 AAAGCGGATTGGGCTATGAAGTGGTTTGAT-ACAA--AGTCGCGTTCCTTTGCTGAGCGA 94809
|| || || |||||| |||||||| | |||| |||| | | ||||| ||||
Sbjct 43985 AAGGCCGACTGGGCTCTGAAGTGGATCACCGACAAGGAGTC---TACGTTTGCCCAGCGC 44041
Query 94810 CTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCCTTCTGCGCTATTTAT 94869
|| | || ||||| ||| ||||| ||||| ||||| ||| ||||| | | || |
Sbjct 44042 CTAGTTGCCTTTGCTGCTGTCGAGGGCATCTTTTTCTCGGGTGCCTTCGCCTCCATCTTC 44101
Query 94870 TGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAACGAGCTTATCTCTCGT 94929
||||| ||||| ||||||||||| ||||| |||||| |||||||| || ||||||
Sbjct 44102 TGGCTGCGCAAGCGTGGTCTCATGCCTGGTCTGACCTTCTCAAACGAGCTCATTTCTCGT 44161
Query 94930 GACGAGGGACTCCACCAAGAGTTTGC 94955
|||||||| || ||| || |||||
Sbjct 44162 GACGAGGGCCTGCACACCGACTTTGC 44187
>seq564
Length=132701
Score = 84.2 bits (92), Expect = 3e-11
Identities = 155/225 (69%), Gaps = 2/225 (1%)
Strand=Plus/Minus
Query 9704 GCATCAATCTCATCAATGAAGACGATGCATGGTTGATTTTCGCGAGCGACTTCAAAGAGA 9763
||||||||||| ||||| |||| ||||||||| || | ||| || |||| |||
Sbjct 130105 GCATCAATCTCGTCAATAAAGATGATGCATGGCGCGTTCTTGCGCGCCGTAGCAAAAAGA 130046
Query 9764 TCCCGTACACGCTTGGCGCCCACACCAACAAACATCTCCACAAAGTTTGCGGCG-GAACA 9822
|| || || ||| | |||||| || ||||||||||| ||||| | | | || |||
Sbjct 130045 TCACGCACTCGCGACGGGCCCACGCCGACAAACATCTCGACAAACTCGGAGCCGCTGACA 129986
Query 9823 TTGGATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAGTCTTACCCGT 9882
| || |||||| || || || || || |||| || || || ||||| |||||
Sbjct 129985 CT-GAAGAAGGGAACGCCTGACTCGCCAGCCGTGGCCTTTGCTAGCAGCGTCTTGCCCGT 129927
Query 9883 ACCTGGCTTACCCGCGAGGAGGGCACCTCGTGGAATCTTGGCGCC 9927
|| || |||| |||| || || || || |||||||| ||
Sbjct 129926 TCCCGGGGGGCCCGATAGGATAGCGCCACGCGGGATCTTGGCACC 129882
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 583250556482200
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |