Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceratocystis_20albifundus_20[genbank_20GCA_5F000813685.1_202015-01- 02] 1,405 sequences; 26,875,327 total letters Query= NC_028093.1 Length=182309 Score E Sequences producing significant alignments: (Bits) Value seq539 201 1e-46 seq431 107 2e-18 seq564 84.2 3e-11 >seq539 Length=40911 Score = 201 bits (222), Expect = 1e-46 Identities = 900/1398 (64%), Gaps = 41/1398 (3%) Strand=Plus/Minus Query 104222 CCACAGTACATGTTCATGCGCGTGGCCATCGGTATTCATGGGGAAGACA---TTGATTCT 104278 || ||| ||||| | ||||| || || | |||||| ||||| |||| | || | Sbjct 17920 CCCCAGCACATGATAATGCGTGTTGCTGTGGGTATT--TGGGGT-GACAAAGTCGAACGT 17864 Query 104279 GTCTTGGAGACATACGACAAGATGTCC--CAAGGTATGTTCATTCACGCAACACCAACCC 104336 || | || || ||| || |||||| |||| | | ||| ||||||| |||| || | Sbjct 17863 GTGCTTGAAACCTACAACTTTATGTCCAGCAAGTTCT--TCACTCACGCATCACCTACGC 17806 Query 104337 TCTTCAATGCTGGTACACCAAGACCCCAAATGTCCAGTTGCTTCCTTATCGCCAACAAGG 104396 |||| ||||||||||| || | || |||| |||||||| ||| || || | Sbjct 17805 TCTTTAATGCTGGTACCCCCCAGGCTCAGTTGTCTTCGTGCTTCCTAGTCGACATGAAAG 17746 Query 104397 AGGACTCAATCAACGGTATCTATGGAACTCTTACGGAGTGTGCGCAAATCTCAAAGTGGG 104456 | ||| ||| | || || || | || || | | ||||| || || ||| || Sbjct 17745 ATGACAGCATCGAGGGCATTTACGATACCCTCAAGACTTGTGCCATGATTTCCAAGATGG 17686 Query 104457 CTGGGGGTATTGGGATGCACATCCATGATGTGAGAGCCAATAAATCTCGTATTCGGGGGA 104516 |||| ||||| || | | |||| | | | |||| | ||| ||| || | Sbjct 17685 CTGGCGGTATCGGTCTCAATGTCCACCGTATTCGTGCCACTGGCTCTTACATTGCTGGTA 17626 Query 104517 CAAATGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGCGCT 104576 | || ||| || | ||||| |||| ||||| || || || ||| ||| || || | Sbjct 17625 CTAACGGTACTTCGAACGGTATCGTTCCCATGCTACGTGTTTTCAACAACACTGCCCGTT 17566 Query 104577 ATGTAAATCAAGCTGGGCGT---CGAAAGGGATCTATCGCAGTCTATCTTGAGCCATGGC 104633 |||| | || | ||| ||| ||| | | || | || || |||||||||| Sbjct 17565 ATGTTGACCAGGGTGGAAACAAGCGACCTGGAGCCTTTGCCATTTACCTCGAGCCATGGC 17506 Query 104634 ACGCGGATATCATGGAGTTCCTTGAGTTGCGTCTCAACCAAGGTGACGAGGAGGCGCGGT 104693 | || ||| || | |||||||| || ||||| ||||| || | || || | || | Sbjct 17505 ATGCTGATGTCTTCGAGTTCCTCGACTTGCGCAAGAACCACGGAAAGGAAGAAGTCCG-T 17447 Query 104694 GC-CGCGATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTTCATGAAGAGAGTTGAGGAG 104752 || || || || |||| || || ||||| || | ||||||||| | |||||| | Sbjct 17446 GCTCGTGACCTATTCTTGGCCCTGTGGATCTGCGACTTGTTCATGAAGCGTGTTGAGAAA 17387 Query 104753 AGTGGCAATTGGTCTCTCTTTTGTCCAGAC-AAGGCACCTGGTCTCTCCGATGCCGTGGG 104811 | || | ||| ||||| | || || | || || || | | | | ||| | || Sbjct 17386 AATGAGGACTGGACTCTCATGTGCCCCAATGAATGCCCCGGCT-TGGCGGATTGCTATGG 17328 Query 104812 TGAGGAGTTTGAAGCCCTTTACACAAAGTACGAGGAAGAAGGTCGGGCGACTGCGACGGT 104871 || |||||||| || || || |||||||||| | || ||||| | | | || ||||| Sbjct 17327 CGAAGAGTTTGAGGCTCTGTATGAAAAGTACGAGAAGGAGGGTCGCG-GTC-GC-ACGGT 17271 Query 104872 G--CCAGCTGCCGATG-TGTGGAAAGCTATTCTCAAGTCTCAAACCGAGACTGGTACACC 104928 | || | || | ||||| | || ||||| || | || || |||||||| | || Sbjct 17270 TGTCAAGGCCCAGAAGCTGTGGTATGCCATTCTGGAGGCCCAGACTGAGACTGGCAACCC 17211 Query 104929 ATACATGCTTTACAAAGACGCCTGTAACCAAAAGAGTAATCAAAAGAATTTGGGTGTGAT 104988 | |||||||||||||||| || |||| ||||| ||||| || ||| | ||| || Sbjct 17210 TTTCATGCTTTACAAAGACCATTGCAACCGCAAGAGCAATCAGAAAAATCTAGGTACCAT 17151 Query 104989 CAAGAGTTCCAATCTCTGTACAGAAATCTTGGAATTTACAGACAAAGATGAGACGGCTGT 105048 | || || || || || || || || | || | | | | || ||| ||||| Sbjct 17150 CCGCAGCTCAAACCTGTGCACTGAGATTATCGAGTATTGTGCCCCTGACGAGGTTGCTGT 17091 Query 105049 GTGTAACCTCGCATCAATCGCTCTCCCCAAGTATGTGGATCCAGAGACAAAG--ACATTT 105106 ||| ||||| ||||| | || || || | ||||| | | | |||| | | | Sbjct 17090 GTGCAACCTAGCATCTCTGGCCCTTCCTTCCTTCGTGGA-CTACA-ACAAGGGTGAGTAT 17033 Query 105107 GATTATGAAAAACTCCACGAAGTTACGAAAACTGTCACCAAAAACCTAAACAGAGTTATT 105166 || | | |||| || |||||||| || || ||| ||||||||| | | ||| Sbjct 17032 GACTTTAAAAAGCTACACGAAGTCACTCAAGTTGTTGTTCGCAACCTAAACCGCATCATT 16973 Query 105167 GATAGAAATTTTTACCCCGTTGAGACTGCTCGTAAATCTAATATGAGACACCGTCCAATT 105226 ||| ||| ||||| || || |||| || || ||| | |||||||| ||| Sbjct 16972 GATGTGAATCACTACCCTGTCCAGGAAGCTCACAACAGCAACATGCGCCACCGTCCCATT 16913 Query 105227 GGTCTCGGTGTTCAGGGTCTCGCGGATGTATTCATTCTTTGTCGCCACGCATTT-GATTC 105285 ||| | ||||| ||||| | || |||| ||| || | || || || ||| || || Sbjct 16912 GGTGTTGGTGTACAGGGCTTGGCTGATGCTTTCCTT-GCTCTCCGCATGCCTTTCGAATC 16854 Query 105286 CGACGAAGCGAAGGAAATCAATGCGCGCATATTTGAGACCATGTATCACGCCGCTCTTGA 105345 | |||||| | | || | || ||||| ||||| || |||||||| || Sbjct 16853 CCCCGAAGCACGCCAGCTTAACAAACAGATTTTTGAAACCATCTACCACGCCGCACTAAC 16794 Query 105346 GGCGAGTTCA---GAGTTGGCAGAGGTTGATGGTCCATATGAAACCTTTGAGGGTTCTCC 105402 || |||| || | || || || ||| | || ||||| ||||||||| || Sbjct 16793 TGC---TTCAATGGAAATCGCCCAGACGGAGGGTACTTACTCAACCTATGAGGGTTCCCC 16737 Query 105403 AGCTTCACAAGGGGTGCTTCAATTTGATATGTGGGAAGGTGAGACCAAGCTTCAC---TA 105459 | || ||||| | | || ||||||||||||| | |||| || || | || | Sbjct 16736 TGTCTCCCAAGGTATCTTGCAGTTTGATATGTGGG-ATGTGACTCCTAG--TGACCTGTG 16680 Query 105460 CGACTGGGAAGCTCTCAAGGAACGCATCAAGGAGAAGGGTCTTCGTAACAGTCTCCTCAT 105519 |||||| |||| ||||| || || || | ||| | || || ||| || | Sbjct 16679 GGACTGGACTTCTCTGAAGGAGAAGATTAAACAGCATGGTGTACGCAATTCTCTTCTGGT 16620 Query 105520 GGCTCCAATGCCAACAGCCTCCACCGCACAAATCTTGGGTAATAATGAATGCTTTGAACC 105579 || || ||||| |||||| ||| | || || |||| || ||||| ||||| ||||| Sbjct 16619 TGCACCCATGCCTACAGCCAGCACATCGCAGATTCTGGGCAACAATGAGTGCTTCGAACC 16560 Query 105580 CTACACGACGAACATCTA 105597 |||||| | |||||||| Sbjct 16559 CTACACATCCAACATCTA 16542 >seq431 Length=155802 Score = 107 bits (118), Expect = 2e-18 Identities = 149/206 (72%), Gaps = 6/206 (3%) Strand=Plus/Plus Query 94753 AAAGCGGATTGGGCTATGAAGTGGTTTGAT-ACAA--AGTCGCGTTCCTTTGCTGAGCGA 94809 || || || |||||| |||||||| | |||| |||| | | ||||| |||| Sbjct 43985 AAGGCCGACTGGGCTCTGAAGTGGATCACCGACAAGGAGTC---TACGTTTGCCCAGCGC 44041 Query 94810 CTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCCTTCTGCGCTATTTAT 94869 || | || ||||| ||| ||||| ||||| ||||| ||| ||||| | | || | Sbjct 44042 CTAGTTGCCTTTGCTGCTGTCGAGGGCATCTTTTTCTCGGGTGCCTTCGCCTCCATCTTC 44101 Query 94870 TGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAACGAGCTTATCTCTCGT 94929 ||||| ||||| ||||||||||| ||||| |||||| |||||||| || |||||| Sbjct 44102 TGGCTGCGCAAGCGTGGTCTCATGCCTGGTCTGACCTTCTCAAACGAGCTCATTTCTCGT 44161 Query 94930 GACGAGGGACTCCACCAAGAGTTTGC 94955 |||||||| || ||| || ||||| Sbjct 44162 GACGAGGGCCTGCACACCGACTTTGC 44187 >seq564 Length=132701 Score = 84.2 bits (92), Expect = 3e-11 Identities = 155/225 (69%), Gaps = 2/225 (1%) Strand=Plus/Minus Query 9704 GCATCAATCTCATCAATGAAGACGATGCATGGTTGATTTTCGCGAGCGACTTCAAAGAGA 9763 ||||||||||| ||||| |||| ||||||||| || | ||| || |||| ||| Sbjct 130105 GCATCAATCTCGTCAATAAAGATGATGCATGGCGCGTTCTTGCGCGCCGTAGCAAAAAGA 130046 Query 9764 TCCCGTACACGCTTGGCGCCCACACCAACAAACATCTCCACAAAGTTTGCGGCG-GAACA 9822 || || || ||| | |||||| || ||||||||||| ||||| | | | || ||| Sbjct 130045 TCACGCACTCGCGACGGGCCCACGCCGACAAACATCTCGACAAACTCGGAGCCGCTGACA 129986 Query 9823 TTGGATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAGTCTTACCCGT 9882 | || |||||| || || || || || |||| || || || ||||| ||||| Sbjct 129985 CT-GAAGAAGGGAACGCCTGACTCGCCAGCCGTGGCCTTTGCTAGCAGCGTCTTGCCCGT 129927 Query 9883 ACCTGGCTTACCCGCGAGGAGGGCACCTCGTGGAATCTTGGCGCC 9927 || || |||| |||| || || || || |||||||| || Sbjct 129926 TCCCGGGGGGCCCGATAGGATAGCGCCACGCGGGATCTTGGCACC 129882 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583250556482200