Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ceratocystis_20albifundus_20[genbank_20GCA_5F000813685.1_202015-01-
02] 1,405 sequences; 26,875,327 total letters
Query= NC_028094.1
Length=473558
Score E
Sequences producing significant alignments: (Bits) Value
seq576 167 7e-36
seq1207 114 4e-20
seq819 113 1e-19
seq492 113 1e-19
seq686 93.3 1e-13
seq669 91.5 4e-13
>seq576
Length=37320
Score = 167 bits (184), Expect = 7e-36
Identities = 178/235 (76%), Gaps = 0/235 (0%)
Strand=Plus/Minus
Query 140503 TTTACATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTAT 140562
||| |||||||||||| | | ||||| | |||||||||||| || || || || || |
Sbjct 12715 TTTGCATACCACCACGCAGACGCAGAACCAAATGAAGAGTAGATTCCTTCTGGATGTTGT 12656
Query 140563 AATCAGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGAT 140622
| ||||| | || || || || ||||| || |||||||||||||| ||||| |||||||
Sbjct 12655 AGTCAGAGAGGGTGCGGCCGTCCTCAAGCTGCTTTCCAGCAAAGATGAGACGCTGCTGAT 12596
Query 140623 CAGGAGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATG 140682
| ||||| || || || |||||||| || || | || ||||| ||||| | ||| || |
Sbjct 12595 CCGGAGGGATACCCTCCTTATCCTGGATCTTGGACTTGACATTGTCAATAGTATCCGAAG 12536
Query 140683 GTTCAACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737
|| || || ||||||| ||||| || || || || || ||||| || |||||
Sbjct 12535 ACTCGACCTCGAGTGTAATAGTCTTGCCCGTCAGGGTCTTGACAAAGATTTGCAT 12481
Score = 156 bits (172), Expect = 1e-32
Identities = 176/236 (75%), Gaps = 0/236 (0%)
Strand=Plus/Minus
Query 140502 TTTTACATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTA 140561
|||||| |||||||| | | ||||| | ||||||||| || || || || || ||
Sbjct 12944 TTTTACTGGCCACCACGCAGACGCAGAACCAAATGAAGAGTGGATTCCTTCTGGATGTTG 12885
Query 140562 TAATCAGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGA 140621
|| ||||| | || || ||||| || ||||| |||||||||||||| ||||| |||||
Sbjct 12884 TAGTCAGAGAGGGTGCGACCATCCTCGAGTTGCTTTCCAGCAAAGATGAGACGCTGCTGG 12825
Query 140622 TCAGGAGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGAT 140681
|||||||| || || || || ||||| || || | || ||||| ||||| | ||| ||
Sbjct 12824 TCAGGAGGGATACCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCAATAGTATCCGAA 12765
Query 140682 GGTTCAACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737
| || || || ||||||| ||||| || || || || || ||||| || |||||
Sbjct 12764 GACTCGACCTCGAGTGTAATAGTCTTGCCCGTCAGGGTCTTGACAAAGATTTGCAT 12709
Score = 140 bits (154), Expect = 1e-27
Identities = 166/225 (74%), Gaps = 0/225 (0%)
Strand=Plus/Minus
Query 140503 TTTACATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTAT 140562
||| |||||||||||| | | ||||| | ||||||||||| || || || || || |
Sbjct 12487 TTTGCATACCACCACGCAGACGCAGAACCAAGTGAAGAGTAGATTCCTTCTGGATGTTGT 12428
Query 140563 AATCAGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGAT 140622
| || || | || || || || ||||| || ||||| ||||| || ||||| |||||||
Sbjct 12427 AGTCGGACAGGGTGCGGCCGTCCTCAAGCTGCTTTCCGGCAAAAATGAGACGCTGCTGAT 12368
Query 140623 CAGGAGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATG 140682
| ||||| || || || |||||||| || || | || ||||| || || | |||||| |
Sbjct 12367 CCGGAGGGATACCCTCCTTATCCTGGATCTTGGACTTGACATTGTCGATGGTATCAGAGG 12308
Query 140683 GTTCAACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAA 140727
|| ||||| || || | ||||| ||||| || || || ||||
Sbjct 12307 ACTCGACTTCGAGGGTGATGGTCTTGCCGGTAAGGGTCTTGACAA 12263
Score = 129 bits (142), Expect = 2e-24
Identities = 155/211 (73%), Gaps = 0/211 (0%)
Strand=Plus/Minus
Query 140503 TTTACATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTAT 140562
||| |||||||||||| | | || || ||||| ||||||||||| || || || || |
Sbjct 12203 TTTGCATACCACCACGCAGGCGGAGCACTAGATGGAGAGTAGACTCCTTCTGGATGTTGT 12144
Query 140563 AATCAGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGAT 140622
| || || | || || ||||| ||||| || ||||| || || || ||||| ||||| |
Sbjct 12143 AGTCGGACAGGGTGCGGCCATCCTCAAGCTGCTTTCCGGCGAAAATGAGACGCTGCTGGT 12084
Query 140623 CAGGAGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATG 140682
| |||||||| || || || ||||| || |||| || || || ||||| | ||| || |
Sbjct 12083 CCGGAGGAATACCCTCCTTGTCCTGGATCTTAGACTTAACGTTGTCAATAGTATCCGAAG 12024
Query 140683 GTTCAACTTCAAGTGTAACTGTCTTTCCGGT 140713
|| || || || || | ||||| |||||
Sbjct 12023 ACTCCACCTCGAGGGTGATGGTCTTGCCGGT 11993
>seq1207
Length=77990
Score = 114 bits (126), Expect = 4e-20
Identities = 138/188 (73%), Gaps = 0/188 (0%)
Strand=Plus/Minus
Query 140550 TTTTGAATATTATAATCAGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATT 140609
|| ||||| || || ||||| | || || ||||| || || || || ||||| |||||
Sbjct 69257 TTCTGAATGTTGTAGTCAGACAGGGTGCGGCCATCCTCCAGCTGCTTGCCAGCGAAGATC 69198
Query 140610 AGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCA 140669
|| || ||||| || || ||||| || || || |||||||| |||| || ||||| ||
Sbjct 69197 AGGCGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCCTGAATCTTAGACTTGACATTGTCG 69138
Query 140670 ATCGAATCAGATGGTTCAACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAA 140729
|| | || || | ||||| || || |||| ||||| || || || || || || |||
Sbjct 69137 ATAGTGTCCGAGGACTCAACCTCGAGGGTAATCGTCTTACCCGTAAGGGTCTTGACGAAA 69078
Query 140730 ATCTGCAT 140737
||||||||
Sbjct 69077 ATCTGCAT 69070
>seq819
Length=99480
Score = 113 bits (124), Expect = 1e-19
Identities = 188/272 (69%), Gaps = 0/272 (0%)
Strand=Plus/Plus
Query 349610 GCTGTTATTACTGTACCAGCCTATTTTAATGATGCCCAGCGTTCTGCAACAAAAGATGCT 349669
||||| || ||||| || ||||| || || || | |||||| || || || || ||
Sbjct 62011 GCTGTCATCACTGTTCCCGCCTACTTCAACGACTCTCAGCGTCAGGCTACCAAGGACTCT 62070
Query 349670 GGCAGCATTGCGGGGTTAAATGTTCTAAGAATGATTAATGAACCCACTGCTGCAGCAATT 349729
|| |||||| || | || || || | || ||||| || ||||||||||| || |||
Sbjct 62071 GGTCTCATTGCTGGCCTCAACGTCCTGCGTATCATTAACGAGCCCACTGCTGCTGCCATT 62130
Query 349730 GCATATGGGCTTGATAAAATGAGTGACCAAGaaaaaaaTATTCTTATTTTTGATTTAGGT 349789
|| || || ||||| || | | || || || | || || || ||| | |||
Sbjct 62131 GCCTACGGTCTTGACAAGAAGGTCGAGGGCGAGCGCAACGTCCTGATCTTCGATCTGGGT 62190
Query 349790 GGTGGTACTTTTGATGTATCACTACTAACACTTGAAGAGGGAATTTTTGAAGTTAAAGCA 349849
||||||||||| ||||| || || || || | || || || || || || || || |
Sbjct 62191 GGTGGTACTTTCGATGTCTCGCTTCTGACCATCGAGGACGGTATCTTCGAGGTCAAGTCC 62250
Query 349850 ACTGCTGGTGATACACATCTTGGTGGAGAAGA 349881
|| |||||||| || ||||| ||||| || ||
Sbjct 62251 ACCGCTGGTGACACCCATCTGGGTGGTGAGGA 62282
>seq492
Length=47418
Score = 113 bits (124), Expect = 1e-19
Identities = 158/222 (71%), Gaps = 0/222 (0%)
Strand=Plus/Minus
Query 140508 ATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATCA 140567
||||||||||| | | || ||||| || ||||| ||||| || || || || || ||
Sbjct 44770 ATACCACCACGCAGGCGCAGGACAAGGTGGAGAGTGGACTCCTTCTGGATGTTGTAGTCG 44711
Query 140568 GATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGGA 140627
|| | || || ||||| ||||| || || ||||||||||| | || ||||| || ||
Sbjct 44710 GACAGAGTGCGGCCATCCTCAAGCTGCTTGCCAGCAAAGATCAAGCGCTGCTGGTCCGGG 44651
Query 140628 GGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTCA 140687
||||| || || || ||||| || || | || || || || |||| || || | ||
Sbjct 44650 GGAATGCCCTCCTTGTCCTGGATCTTGGACTTGACGTTGTCGATCGTGTCCGAAGACTCG 44591
Query 140688 ACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAA 140729
|| || || |||| ||||| || || || || || || |||
Sbjct 44590 ACCTCCAGGGTAATGGTCTTACCCGTCAGGGTCTTGACGAAA 44549
>seq686
Length=112311
Score = 93.3 bits (102), Expect = 1e-13
Identities = 112/149 (75%), Gaps = 5/149 (3%)
Strand=Plus/Minus
Query 377439 TGATAATATTTCTTCAATGCGTGGCACACCACGTGTAACATTCGATTTAGATGCAACACC 377498
||| ||| || |||||| ||||||||||| |||| || ||| || || | |||||
Sbjct 101932 TGAGAAT-TTCCTTCAAA-CGTGGCACACCTAGTGTGACGTTC---TTGGAGGACACACC 101878
Query 377499 AGCAAAGTGGAAAGTATTAAGAGTTAATTGAGTAGTGGGCTCACCAATTGACTGCGCTGC 377558
|| || ||||| ||||| || || | ||||||| || |||||||| ||||| || ||
Sbjct 101877 GGCGAAATGGAACGTATTTAGGGTCATCTGAGTAGCAGGTTCACCAATCGACTGAGCAGC 101818
Query 377559 AATAACGCCAACCATTTCTCCAGGATTGA 377587
|| || || ||||| |||||||| ||||
Sbjct 101817 AAGCACACCGACCATCTCTCCAGGGTTGA 101789
>seq669
Length=28067
Score = 91.5 bits (100), Expect = 4e-13
Identities = 110/147 (75%), Gaps = 2/147 (1%)
Strand=Plus/Minus
Query 266972 AATCGGCGATAAATTTTCTAGTCGCCACGGACAAAAAGGTACCATTGGTACGATTATTCC 267031
||| ||||| || ||| | ||| ||||| ||||| ||||| |||||| || || ||
Sbjct 15798 AATTGGCGACAAGTTTGCATCTCGTCACGGTCAAAAGGGTACAATTGGTGTGAC-ATACC 15740
Query 267032 TG-AAGAAAATATGCCATTTAATGAAGATGGAATTAGACCTGATATTATTATTAATCCTC 267090
||||| |||||||||||| || || || | |||||||| |||||||||||||
Sbjct 15739 GCCAAGAAGATATGCCATTTACCCGCGAGGGCATCACTCCTGATATCATTATTAATCCTC 15680
Query 267091 ATGCTATTCCTAGTCGTATGACAATTG 267117
| ||||| ||| |||||||| ||||
Sbjct 15679 ACGCTATCCCTTCGCGTATGACCATTG 15653
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1515227123053215
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |