Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceratocystis_20albifundus_20[genbank_20GCA_5F000813685.1_202015-01- 02] 1,405 sequences; 26,875,327 total letters Query= NC_028094.1 Length=473558 Score E Sequences producing significant alignments: (Bits) Value seq576 167 7e-36 seq1207 114 4e-20 seq819 113 1e-19 seq492 113 1e-19 seq686 93.3 1e-13 seq669 91.5 4e-13 >seq576 Length=37320 Score = 167 bits (184), Expect = 7e-36 Identities = 178/235 (76%), Gaps = 0/235 (0%) Strand=Plus/Minus Query 140503 TTTACATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTAT 140562 ||| |||||||||||| | | ||||| | |||||||||||| || || || || || | Sbjct 12715 TTTGCATACCACCACGCAGACGCAGAACCAAATGAAGAGTAGATTCCTTCTGGATGTTGT 12656 Query 140563 AATCAGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGAT 140622 | ||||| | || || || || ||||| || |||||||||||||| ||||| ||||||| Sbjct 12655 AGTCAGAGAGGGTGCGGCCGTCCTCAAGCTGCTTTCCAGCAAAGATGAGACGCTGCTGAT 12596 Query 140623 CAGGAGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATG 140682 | ||||| || || || |||||||| || || | || ||||| ||||| | ||| || | Sbjct 12595 CCGGAGGGATACCCTCCTTATCCTGGATCTTGGACTTGACATTGTCAATAGTATCCGAAG 12536 Query 140683 GTTCAACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 || || || ||||||| ||||| || || || || || ||||| || ||||| Sbjct 12535 ACTCGACCTCGAGTGTAATAGTCTTGCCCGTCAGGGTCTTGACAAAGATTTGCAT 12481 Score = 156 bits (172), Expect = 1e-32 Identities = 176/236 (75%), Gaps = 0/236 (0%) Strand=Plus/Minus Query 140502 TTTTACATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTA 140561 |||||| |||||||| | | ||||| | ||||||||| || || || || || || Sbjct 12944 TTTTACTGGCCACCACGCAGACGCAGAACCAAATGAAGAGTGGATTCCTTCTGGATGTTG 12885 Query 140562 TAATCAGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGA 140621 || ||||| | || || ||||| || ||||| |||||||||||||| ||||| ||||| Sbjct 12884 TAGTCAGAGAGGGTGCGACCATCCTCGAGTTGCTTTCCAGCAAAGATGAGACGCTGCTGG 12825 Query 140622 TCAGGAGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGAT 140681 |||||||| || || || || ||||| || || | || ||||| ||||| | ||| || Sbjct 12824 TCAGGAGGGATACCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCAATAGTATCCGAA 12765 Query 140682 GGTTCAACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 | || || || ||||||| ||||| || || || || || ||||| || ||||| Sbjct 12764 GACTCGACCTCGAGTGTAATAGTCTTGCCCGTCAGGGTCTTGACAAAGATTTGCAT 12709 Score = 140 bits (154), Expect = 1e-27 Identities = 166/225 (74%), Gaps = 0/225 (0%) Strand=Plus/Minus Query 140503 TTTACATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTAT 140562 ||| |||||||||||| | | ||||| | ||||||||||| || || || || || | Sbjct 12487 TTTGCATACCACCACGCAGACGCAGAACCAAGTGAAGAGTAGATTCCTTCTGGATGTTGT 12428 Query 140563 AATCAGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGAT 140622 | || || | || || || || ||||| || ||||| ||||| || ||||| ||||||| Sbjct 12427 AGTCGGACAGGGTGCGGCCGTCCTCAAGCTGCTTTCCGGCAAAAATGAGACGCTGCTGAT 12368 Query 140623 CAGGAGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATG 140682 | ||||| || || || |||||||| || || | || ||||| || || | |||||| | Sbjct 12367 CCGGAGGGATACCCTCCTTATCCTGGATCTTGGACTTGACATTGTCGATGGTATCAGAGG 12308 Query 140683 GTTCAACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAA 140727 || ||||| || || | ||||| ||||| || || || |||| Sbjct 12307 ACTCGACTTCGAGGGTGATGGTCTTGCCGGTAAGGGTCTTGACAA 12263 Score = 129 bits (142), Expect = 2e-24 Identities = 155/211 (73%), Gaps = 0/211 (0%) Strand=Plus/Minus Query 140503 TTTACATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTAT 140562 ||| |||||||||||| | | || || ||||| ||||||||||| || || || || | Sbjct 12203 TTTGCATACCACCACGCAGGCGGAGCACTAGATGGAGAGTAGACTCCTTCTGGATGTTGT 12144 Query 140563 AATCAGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGAT 140622 | || || | || || ||||| ||||| || ||||| || || || ||||| ||||| | Sbjct 12143 AGTCGGACAGGGTGCGGCCATCCTCAAGCTGCTTTCCGGCGAAAATGAGACGCTGCTGGT 12084 Query 140623 CAGGAGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATG 140682 | |||||||| || || || ||||| || |||| || || || ||||| | ||| || | Sbjct 12083 CCGGAGGAATACCCTCCTTGTCCTGGATCTTAGACTTAACGTTGTCAATAGTATCCGAAG 12024 Query 140683 GTTCAACTTCAAGTGTAACTGTCTTTCCGGT 140713 || || || || || | ||||| ||||| Sbjct 12023 ACTCCACCTCGAGGGTGATGGTCTTGCCGGT 11993 >seq1207 Length=77990 Score = 114 bits (126), Expect = 4e-20 Identities = 138/188 (73%), Gaps = 0/188 (0%) Strand=Plus/Minus Query 140550 TTTTGAATATTATAATCAGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATT 140609 || ||||| || || ||||| | || || ||||| || || || || ||||| ||||| Sbjct 69257 TTCTGAATGTTGTAGTCAGACAGGGTGCGGCCATCCTCCAGCTGCTTGCCAGCGAAGATC 69198 Query 140610 AGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCA 140669 || || ||||| || || ||||| || || || |||||||| |||| || ||||| || Sbjct 69197 AGGCGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCCTGAATCTTAGACTTGACATTGTCG 69138 Query 140670 ATCGAATCAGATGGTTCAACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAA 140729 || | || || | ||||| || || |||| ||||| || || || || || || ||| Sbjct 69137 ATAGTGTCCGAGGACTCAACCTCGAGGGTAATCGTCTTACCCGTAAGGGTCTTGACGAAA 69078 Query 140730 ATCTGCAT 140737 |||||||| Sbjct 69077 ATCTGCAT 69070 >seq819 Length=99480 Score = 113 bits (124), Expect = 1e-19 Identities = 188/272 (69%), Gaps = 0/272 (0%) Strand=Plus/Plus Query 349610 GCTGTTATTACTGTACCAGCCTATTTTAATGATGCCCAGCGTTCTGCAACAAAAGATGCT 349669 ||||| || ||||| || ||||| || || || | |||||| || || || || || Sbjct 62011 GCTGTCATCACTGTTCCCGCCTACTTCAACGACTCTCAGCGTCAGGCTACCAAGGACTCT 62070 Query 349670 GGCAGCATTGCGGGGTTAAATGTTCTAAGAATGATTAATGAACCCACTGCTGCAGCAATT 349729 || |||||| || | || || || | || ||||| || ||||||||||| || ||| Sbjct 62071 GGTCTCATTGCTGGCCTCAACGTCCTGCGTATCATTAACGAGCCCACTGCTGCTGCCATT 62130 Query 349730 GCATATGGGCTTGATAAAATGAGTGACCAAGaaaaaaaTATTCTTATTTTTGATTTAGGT 349789 || || || ||||| || | | || || || | || || || ||| | ||| Sbjct 62131 GCCTACGGTCTTGACAAGAAGGTCGAGGGCGAGCGCAACGTCCTGATCTTCGATCTGGGT 62190 Query 349790 GGTGGTACTTTTGATGTATCACTACTAACACTTGAAGAGGGAATTTTTGAAGTTAAAGCA 349849 ||||||||||| ||||| || || || || | || || || || || || || || | Sbjct 62191 GGTGGTACTTTCGATGTCTCGCTTCTGACCATCGAGGACGGTATCTTCGAGGTCAAGTCC 62250 Query 349850 ACTGCTGGTGATACACATCTTGGTGGAGAAGA 349881 || |||||||| || ||||| ||||| || || Sbjct 62251 ACCGCTGGTGACACCCATCTGGGTGGTGAGGA 62282 >seq492 Length=47418 Score = 113 bits (124), Expect = 1e-19 Identities = 158/222 (71%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 140508 ATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATCA 140567 ||||||||||| | | || ||||| || ||||| ||||| || || || || || || Sbjct 44770 ATACCACCACGCAGGCGCAGGACAAGGTGGAGAGTGGACTCCTTCTGGATGTTGTAGTCG 44711 Query 140568 GATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGGA 140627 || | || || ||||| ||||| || || ||||||||||| | || ||||| || || Sbjct 44710 GACAGAGTGCGGCCATCCTCAAGCTGCTTGCCAGCAAAGATCAAGCGCTGCTGGTCCGGG 44651 Query 140628 GGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTCA 140687 ||||| || || || ||||| || || | || || || || |||| || || | || Sbjct 44650 GGAATGCCCTCCTTGTCCTGGATCTTGGACTTGACGTTGTCGATCGTGTCCGAAGACTCG 44591 Query 140688 ACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAA 140729 || || || |||| ||||| || || || || || || ||| Sbjct 44590 ACCTCCAGGGTAATGGTCTTACCCGTCAGGGTCTTGACGAAA 44549 >seq686 Length=112311 Score = 93.3 bits (102), Expect = 1e-13 Identities = 112/149 (75%), Gaps = 5/149 (3%) Strand=Plus/Minus Query 377439 TGATAATATTTCTTCAATGCGTGGCACACCACGTGTAACATTCGATTTAGATGCAACACC 377498 ||| ||| || |||||| ||||||||||| |||| || ||| || || | ||||| Sbjct 101932 TGAGAAT-TTCCTTCAAA-CGTGGCACACCTAGTGTGACGTTC---TTGGAGGACACACC 101878 Query 377499 AGCAAAGTGGAAAGTATTAAGAGTTAATTGAGTAGTGGGCTCACCAATTGACTGCGCTGC 377558 || || ||||| ||||| || || | ||||||| || |||||||| ||||| || || Sbjct 101877 GGCGAAATGGAACGTATTTAGGGTCATCTGAGTAGCAGGTTCACCAATCGACTGAGCAGC 101818 Query 377559 AATAACGCCAACCATTTCTCCAGGATTGA 377587 || || || ||||| |||||||| |||| Sbjct 101817 AAGCACACCGACCATCTCTCCAGGGTTGA 101789 >seq669 Length=28067 Score = 91.5 bits (100), Expect = 4e-13 Identities = 110/147 (75%), Gaps = 2/147 (1%) Strand=Plus/Minus Query 266972 AATCGGCGATAAATTTTCTAGTCGCCACGGACAAAAAGGTACCATTGGTACGATTATTCC 267031 ||| ||||| || ||| | ||| ||||| ||||| ||||| |||||| || || || Sbjct 15798 AATTGGCGACAAGTTTGCATCTCGTCACGGTCAAAAGGGTACAATTGGTGTGAC-ATACC 15740 Query 267032 TG-AAGAAAATATGCCATTTAATGAAGATGGAATTAGACCTGATATTATTATTAATCCTC 267090 ||||| |||||||||||| || || || | |||||||| ||||||||||||| Sbjct 15739 GCCAAGAAGATATGCCATTTACCCGCGAGGGCATCACTCCTGATATCATTATTAATCCTC 15680 Query 267091 ATGCTATTCCTAGTCGTATGACAATTG 267117 | ||||| ||| |||||||| |||| Sbjct 15679 ACGCTATCCCTTCGCGTATGACCATTG 15653 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1515227123053215