Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceratocystis_20albifundus_20[genbank_20GCA_5F000813685.1_202015-01- 02] 1,405 sequences; 26,875,327 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq539 196 5e-45 seq431 154 2e-32 seq778 96.9 4e-15 >seq539 Length=40911 Score = 196 bits (216), Expect = 5e-45 Identities = 404/593 (68%), Gaps = 10/593 (2%) Strand=Plus/Minus Query 53195 ATGCGCGTCGCCTTGGGTATCCACGGTGACGACTACACGCGTGTCCGTGAGACGTACGAC 53254 ||||| || || ||||||| |||||| | | ||||| | ||| || ||| || Sbjct 17905 ATGCGTGTTGCTGTGGGTATTTGGGGTGACAAAGTCGAACGTGTGCTTGAAACCTACAAC 17846 Query 53255 TTAATGAGCCAAAAGTACTTTACGCACGCCACGCCAACCCTGTTCAACGCTGGTACGAAT 53314 || ||| | |||| ||| || ||||| | || || || || || |||||||| Sbjct 17845 TTTATGTCCAGCAAGTTCTTCACTCACGCATCACCTACGCTCTTTAATGCTGGTACCCCC 17786 Query 53315 CACCCTCAGATGTCGAGCTGCTTCCTGGTGGCGATGAAGGATGACTCGATCGACGGCATC 53374 || ||||| |||| |||||||| || | ||||| |||||| ||||| ||||| Sbjct 17785 CAGGCTCAGTTGTCTTCGTGCTTCCTAGTCGACATGAAAGATGACAGCATCGAGGGCATT 17726 Query 53375 TACGAGACGCTCAAGGAGTGTGCCCACATCTCCAAGTGGTCGGGTGGTATCGGTATCCAC 53434 ||||| || |||||| |||||| || |||||| | | || ||||||||| || | Sbjct 17725 TACGATACCCTCAAGACTTGTGCCATGATTTCCAAGATGGCTGGCGGTATCGGTCTCAA- 17667 Query 53435 TGCTCGAACGTC--CGTGCGAACGGCACACCAATCAAGGGGACGAACGG--CGTCGCCGA 53490 || || | ||| ||||| | ||| | || || || ||||| | ||| | Sbjct 17666 TG-TCCACCGTATTCGTGCCACTGGCTCTTACATTGCTGGTACTAACGGTACTTCGA--A 17610 Query 53491 TGGAATCGTGCCTATGCTCCGCGTCTTCAACAACACGGCCCGGTACGTCAACCAGGGTGG 53550 || ||||| || ||||| || || ||||||||||| ||||| || || |||||||||| Sbjct 17609 CGGTATCGTTCCCATGCTACGTGTTTTCAACAACACTGCCCGTTATGTTGACCAGGGTGG 17550 Query 53551 TGGGAAGCGCAAGGGGTCGTTCGCCATCTACCTCGAGCCGTGGCACGCCGACATTATGGA 53610 ||||| || | || ||||| ||||||||||| ||||| || || | | || Sbjct 17549 AAACAAGCGACCTGGAGCCTTTGCCATTTACCTCGAGCCATGGCATGCTGATGTCTTCGA 17490 Query 53611 GTTTCTCGAGCTGCGTCTGAATCAGGGTGACGAAGAGATGCGCTGC-CGTGACCTGTTTA 53669 ||| ||||| |||| ||| || || | ||||| | || ||| |||||||| || Sbjct 17489 GTTCCTCGACTTGCGCAAGAACCACGGAAAGGAAGAAGTCCG-TGCTCGTGACCTATTCT 17431 Query 53670 CAGCTCTGTGGATTCCGGACCTCTTCATGCAAAAGGTGGAGAAGGACGAGGAGTGGTACC 53729 || |||||||| ||| | |||||| | || ||||| | ||||| ||| | Sbjct 17430 TGGCCCTGTGGATCTGCGACTTGTTCATGAAGCGTGTTGAGAAAAATGAGGACTGGACTC 17371 Query 53730 TGATGTGCCCGAACGAGTGCCCCGGCCTCCAGGGTGTCTACGGTGAGGAGTTT 53782 | |||||||| || || ||||||||| | || | ||| || || |||||| Sbjct 17370 TCATGTGCCCCAATGAATGCCCCGGCTTGGCGGATTGCTATGGCGAAGAGTTT 17318 Score = 91.5 bits (100), Expect = 2e-13 Identities = 103/138 (75%), Gaps = 0/138 (0%) Strand=Plus/Minus Query 55786 TGCTGATCGTGGTGCGTACATCGACCAGTCCCAGTCTCTGAACATCTTCATGGAGAATCC 55845 |||||| |||||||| | ||| ||||| || |||||||| ||||| |||| | |||| Sbjct 16331 TGCTGACCGTGGTGCTTTCATTGACCAATCGCAGTCTCTAAACATTCACATGAAAGATCC 16272 Query 55846 TTCACTGGCCAAGTTGAGCTCGATGCACTTTTACGGGTGGAAGAAGGGACTCAAGACGGG 55905 | ||| |||| | | | ||||||||| ||| ||||| || ||||||||||| Sbjct 16271 CACCATGGGCAAGATCACCAGCATGCACTTTGCCGGCTGGAAACTAGGTCTCAAGACGGG 16212 Query 55906 TATGTACTATCTGCGGAC 55923 |||||||| ||||| || Sbjct 16211 CATGTACTACCTGCGTAC 16194 >seq431 Length=155802 Score = 154 bits (170), Expect = 2e-32 Identities = 481/730 (66%), Gaps = 31/730 (4%) Strand=Plus/Minus Query 74463 TAATCACCGACCCGCTTTTCAAAAAAGTTGGTCTTCCCTTCCAACGAGATGTTCTCCATC 74522 ||||||||||| ||||| ||||| ||||| ||||| || | | ||||||||||||||| Sbjct 44475 TAATCACCGACACGCTTCTCAAAGAAGTTAGTCTTGCCGCCGAGCGAGATGTTCTCCATG 44416 Query 74523 CAGTCGAAAGGGTTCTTTGCACCGTAAATAGGCTTCTC----CCCAAACTGTGCCATG-A 74577 ||||||| ||||| | |||| ||| | ||| || || | | | || | | Sbjct 44415 AAGTCGAAGGGGTTTGTGGCACGGTACA---CCTTTTCGTTGCCTAGA--GCAACAAGCA 44361 Query 74578 GGCGATCCGCCACAAATTGAATGTACTGCGTCATTTCTCCCGCATCCATGCCGATGAGTT 74637 |||| ||||| ||||| | |||||||||| |||| | || | ||| || | || Sbjct 44360 GGCGGTCCGCAACAAACTCAATGTACTGCTTCATCAGATCGGCGTTCATTCCTAGCAGAC 44301 Query 74638 TGCACGGCAGTGCCTCGGTGATAAACTCACTCTCCACCTCGCAAGCCCAT--TGGACAAT 74695 ||| || || |||||||| | ||||| |||| | || ||| ||| || || Sbjct 44300 CGCAGGGAAGAGCCTCGGTCAGGAACTCCTTCTCGA--TCACAACGGCATCAGTGATGAT 44243 Query 74696 CTTGTG---AATGTCTTTGGAAGGGCACTTTTCCCTCAGGTGAGAGTAAAGC-GTCACGG 74751 ||| || | ||| ||| |||| || | | ||||| ||| | ||| | || | Sbjct 44242 CTTTTGCACTAGGTCCTTGCTGGGGCGGTTGT---TTAGGTGCGAGAACAGCAGGCA-AG 44187 Query 74752 CAAACTCCTGATGCGAGCCTTCATCTCTGCTTATCAATTCATTCGAAAACGAAAGGCCAG 74811 |||| || ||| ||| || || | || | || || || || | || |||| Sbjct 44186 CAAAGTCGGTGTGCAGGCCCTCGTCACGAGAAATGAGCTCGTTTGAGAAGGTCAGACCAG 44127 Query 74812 GCATAAGTCCACGCTTCTTCAACCAAAAGATGGCACAGAAGGAACCACTGAAGAAGATGC 74871 |||| || |||||||| || ||| ||||||| ||||| ||| ||| ||||||| Sbjct 44126 GCATGAGACCACGCTTGCGCAGCCAGAAGATGGAGGCGAAGGCACCCGAGAAAAAGATGC 44067 Query 74872 CTTCGACACACGCAAAGGCGACAAGGCGTTGCGCGAACGGTG---CATCGGAAGTCATCC 74928 | |||||| |||||||| || ||||| || || |||| | | | | || |||| Sbjct 44066 CCTCGACAGCAGCAAAGGCAACTAGGCGCTGGGCAAACGTAGACTCCTTGTCGGTGATCC 44007 Query 74929 AAGTCTGAGCCCATTCAGCTTTTCGTTTGACCGCAGGG-ACAGTATCGATCGCTTGGAAG 74987 | || ||||||| || || || || || |||||| | ||| || || || | ||| Sbjct 44006 ACTTCAGAGCCCAGTCGGCCTTGCGACGGA-TGCAGGGAATAGTGTCAATGGCATTGAAT 43948 Query 74988 AGGCTTGCCTTCTCTTC--GGGATCCTTGACGAGCTTGTCAATCATAAGTGAGTACGTCT 75045 ||| || | | || | ||| ||||||| | ||||||| | || || || || | Sbjct 43947 AGGTATG--TGCGCTGCGAGGGCTCCTTGATGTAGGTGTCAATTAGCAGCGAATAGGTTT 43890 Query 75046 CCGAATGAATCGACTCGTTGAACGACTGGTACGCGTAGAAAGACCGCGCCTCTGCAATCT 75105 | ||||| || || | | |||| | ||||||| |||| ||||| | ||||| Sbjct 43889 CAGAATGGATGTTTTCCATCATGATCTGGAAACCGTAGAAGCACCGGGCCTCGGGAATCT 43830 Query 75106 GTACATCCTTTGAAAAATTCATGTCGATATTCTCCATGACGATGCCGTCCGAGGCGGCGA 75165 | || || ||| || | ||| || || |||||||||| || ||||| || | Sbjct 43829 GCACCTCGCCTGAGAAGCGCTCAACGAGGTTTTCGTTGACGATGCCATCAGAGGCAGCAA 43770 Query 75166 AAAAAGCCAG 75175 | || || || Sbjct 43769 AGAAGGCGAG 43760 >seq778 Length=18041 Score = 96.9 bits (106), Expect = 4e-15 Identities = 180/261 (69%), Gaps = 5/261 (2%) Strand=Plus/Plus Query 117326 GCAGCATCCTTGCCACCAGCAAGACGCGTACCGAATTGTCCACTCGGCTCCAAGAGGTTC 117385 ||||||||| ||||||||||||||||| ||| || | ||||| ||||||| ||| Sbjct 2857 GCAGCATCCGAGCCACCAGCAAGACGCGAACCAAAGTTACCACTGGGCTCCAGACAGTTG 2916 Query 117386 AGGTTGTTGGCGCCCACAAAGTTTTGAGCCAAGTTGACAATCGTACCTTGGAGGCTCGCC 117445 | |||||||| || ||||||| || |||| | ||| || ||| || || Sbjct 2917 ATGTTGTTGGAACCGACAAAGTCCTGGGCCAGACCAATAATGGTCTGTTGTAGAGATGCT 2976 Query 117446 TCACCATGGTGATACGCCGTCTGCTCCGCCACGTAGCCCGCCAGCTGAGCCACCTTCATG 117505 || || || || || | || || | | || | || ||||||| | | |||||||| Sbjct 2977 TCTCCGTGTTGGTAGGAGGTGTGTCCAGAAACAAAACCAGCCAGCTCAACAACCTTCATA 3036 Query 117506 TC--TGACGTCAGGTTCTTCTTGAGGCAGGCATAAATCACCTTGCGCTGACTTGGCTTCA 117563 || ||| | ||| || ||| ||| || ||||| ||||| ||||||| ||||| | Sbjct 3037 TCCTGGAC--AATGTTTTTGCTGAAGCACGCGTAAATGACCTTTCGCTGACCAGGCTTGA 3094 Query 117564 GACCATCCGCCACGTGAGGGA 117584 |||||| ||| |||||| Sbjct 3095 AGCCATCCAGTACG-GAGGGA 3114 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547206389519000