Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ceratocystis_20albifundus_20[genbank_20GCA_5F000813685.1_202015-01-
02] 1,405 sequences; 26,875,327 total letters
Query= NC_028110.1
Length=171045
Score E
Sequences producing significant alignments: (Bits) Value
seq539 196 5e-45
seq431 154 2e-32
seq778 96.9 4e-15
>seq539
Length=40911
Score = 196 bits (216), Expect = 5e-45
Identities = 404/593 (68%), Gaps = 10/593 (2%)
Strand=Plus/Minus
Query 53195 ATGCGCGTCGCCTTGGGTATCCACGGTGACGACTACACGCGTGTCCGTGAGACGTACGAC 53254
||||| || || ||||||| |||||| | | ||||| | ||| || ||| ||
Sbjct 17905 ATGCGTGTTGCTGTGGGTATTTGGGGTGACAAAGTCGAACGTGTGCTTGAAACCTACAAC 17846
Query 53255 TTAATGAGCCAAAAGTACTTTACGCACGCCACGCCAACCCTGTTCAACGCTGGTACGAAT 53314
|| ||| | |||| ||| || ||||| | || || || || || ||||||||
Sbjct 17845 TTTATGTCCAGCAAGTTCTTCACTCACGCATCACCTACGCTCTTTAATGCTGGTACCCCC 17786
Query 53315 CACCCTCAGATGTCGAGCTGCTTCCTGGTGGCGATGAAGGATGACTCGATCGACGGCATC 53374
|| ||||| |||| |||||||| || | ||||| |||||| ||||| |||||
Sbjct 17785 CAGGCTCAGTTGTCTTCGTGCTTCCTAGTCGACATGAAAGATGACAGCATCGAGGGCATT 17726
Query 53375 TACGAGACGCTCAAGGAGTGTGCCCACATCTCCAAGTGGTCGGGTGGTATCGGTATCCAC 53434
||||| || |||||| |||||| || |||||| | | || ||||||||| || |
Sbjct 17725 TACGATACCCTCAAGACTTGTGCCATGATTTCCAAGATGGCTGGCGGTATCGGTCTCAA- 17667
Query 53435 TGCTCGAACGTC--CGTGCGAACGGCACACCAATCAAGGGGACGAACGG--CGTCGCCGA 53490
|| || | ||| ||||| | ||| | || || || ||||| | ||| |
Sbjct 17666 TG-TCCACCGTATTCGTGCCACTGGCTCTTACATTGCTGGTACTAACGGTACTTCGA--A 17610
Query 53491 TGGAATCGTGCCTATGCTCCGCGTCTTCAACAACACGGCCCGGTACGTCAACCAGGGTGG 53550
|| ||||| || ||||| || || ||||||||||| ||||| || || ||||||||||
Sbjct 17609 CGGTATCGTTCCCATGCTACGTGTTTTCAACAACACTGCCCGTTATGTTGACCAGGGTGG 17550
Query 53551 TGGGAAGCGCAAGGGGTCGTTCGCCATCTACCTCGAGCCGTGGCACGCCGACATTATGGA 53610
||||| || | || ||||| ||||||||||| ||||| || || | | ||
Sbjct 17549 AAACAAGCGACCTGGAGCCTTTGCCATTTACCTCGAGCCATGGCATGCTGATGTCTTCGA 17490
Query 53611 GTTTCTCGAGCTGCGTCTGAATCAGGGTGACGAAGAGATGCGCTGC-CGTGACCTGTTTA 53669
||| ||||| |||| ||| || || | ||||| | || ||| |||||||| ||
Sbjct 17489 GTTCCTCGACTTGCGCAAGAACCACGGAAAGGAAGAAGTCCG-TGCTCGTGACCTATTCT 17431
Query 53670 CAGCTCTGTGGATTCCGGACCTCTTCATGCAAAAGGTGGAGAAGGACGAGGAGTGGTACC 53729
|| |||||||| ||| | |||||| | || ||||| | ||||| ||| |
Sbjct 17430 TGGCCCTGTGGATCTGCGACTTGTTCATGAAGCGTGTTGAGAAAAATGAGGACTGGACTC 17371
Query 53730 TGATGTGCCCGAACGAGTGCCCCGGCCTCCAGGGTGTCTACGGTGAGGAGTTT 53782
| |||||||| || || ||||||||| | || | ||| || || ||||||
Sbjct 17370 TCATGTGCCCCAATGAATGCCCCGGCTTGGCGGATTGCTATGGCGAAGAGTTT 17318
Score = 91.5 bits (100), Expect = 2e-13
Identities = 103/138 (75%), Gaps = 0/138 (0%)
Strand=Plus/Minus
Query 55786 TGCTGATCGTGGTGCGTACATCGACCAGTCCCAGTCTCTGAACATCTTCATGGAGAATCC 55845
|||||| |||||||| | ||| ||||| || |||||||| ||||| |||| | ||||
Sbjct 16331 TGCTGACCGTGGTGCTTTCATTGACCAATCGCAGTCTCTAAACATTCACATGAAAGATCC 16272
Query 55846 TTCACTGGCCAAGTTGAGCTCGATGCACTTTTACGGGTGGAAGAAGGGACTCAAGACGGG 55905
| ||| |||| | | | ||||||||| ||| ||||| || |||||||||||
Sbjct 16271 CACCATGGGCAAGATCACCAGCATGCACTTTGCCGGCTGGAAACTAGGTCTCAAGACGGG 16212
Query 55906 TATGTACTATCTGCGGAC 55923
|||||||| ||||| ||
Sbjct 16211 CATGTACTACCTGCGTAC 16194
>seq431
Length=155802
Score = 154 bits (170), Expect = 2e-32
Identities = 481/730 (66%), Gaps = 31/730 (4%)
Strand=Plus/Minus
Query 74463 TAATCACCGACCCGCTTTTCAAAAAAGTTGGTCTTCCCTTCCAACGAGATGTTCTCCATC 74522
||||||||||| ||||| ||||| ||||| ||||| || | | |||||||||||||||
Sbjct 44475 TAATCACCGACACGCTTCTCAAAGAAGTTAGTCTTGCCGCCGAGCGAGATGTTCTCCATG 44416
Query 74523 CAGTCGAAAGGGTTCTTTGCACCGTAAATAGGCTTCTC----CCCAAACTGTGCCATG-A 74577
||||||| ||||| | |||| ||| | ||| || || | | | || | |
Sbjct 44415 AAGTCGAAGGGGTTTGTGGCACGGTACA---CCTTTTCGTTGCCTAGA--GCAACAAGCA 44361
Query 74578 GGCGATCCGCCACAAATTGAATGTACTGCGTCATTTCTCCCGCATCCATGCCGATGAGTT 74637
|||| ||||| ||||| | |||||||||| |||| | || | ||| || | ||
Sbjct 44360 GGCGGTCCGCAACAAACTCAATGTACTGCTTCATCAGATCGGCGTTCATTCCTAGCAGAC 44301
Query 74638 TGCACGGCAGTGCCTCGGTGATAAACTCACTCTCCACCTCGCAAGCCCAT--TGGACAAT 74695
||| || || |||||||| | ||||| |||| | || ||| ||| || ||
Sbjct 44300 CGCAGGGAAGAGCCTCGGTCAGGAACTCCTTCTCGA--TCACAACGGCATCAGTGATGAT 44243
Query 74696 CTTGTG---AATGTCTTTGGAAGGGCACTTTTCCCTCAGGTGAGAGTAAAGC-GTCACGG 74751
||| || | ||| ||| |||| || | | ||||| ||| | ||| | || |
Sbjct 44242 CTTTTGCACTAGGTCCTTGCTGGGGCGGTTGT---TTAGGTGCGAGAACAGCAGGCA-AG 44187
Query 74752 CAAACTCCTGATGCGAGCCTTCATCTCTGCTTATCAATTCATTCGAAAACGAAAGGCCAG 74811
|||| || ||| ||| || || | || | || || || || | || ||||
Sbjct 44186 CAAAGTCGGTGTGCAGGCCCTCGTCACGAGAAATGAGCTCGTTTGAGAAGGTCAGACCAG 44127
Query 74812 GCATAAGTCCACGCTTCTTCAACCAAAAGATGGCACAGAAGGAACCACTGAAGAAGATGC 74871
|||| || |||||||| || ||| ||||||| ||||| ||| ||| |||||||
Sbjct 44126 GCATGAGACCACGCTTGCGCAGCCAGAAGATGGAGGCGAAGGCACCCGAGAAAAAGATGC 44067
Query 74872 CTTCGACACACGCAAAGGCGACAAGGCGTTGCGCGAACGGTG---CATCGGAAGTCATCC 74928
| |||||| |||||||| || ||||| || || |||| | | | | || ||||
Sbjct 44066 CCTCGACAGCAGCAAAGGCAACTAGGCGCTGGGCAAACGTAGACTCCTTGTCGGTGATCC 44007
Query 74929 AAGTCTGAGCCCATTCAGCTTTTCGTTTGACCGCAGGG-ACAGTATCGATCGCTTGGAAG 74987
| || ||||||| || || || || || |||||| | ||| || || || | |||
Sbjct 44006 ACTTCAGAGCCCAGTCGGCCTTGCGACGGA-TGCAGGGAATAGTGTCAATGGCATTGAAT 43948
Query 74988 AGGCTTGCCTTCTCTTC--GGGATCCTTGACGAGCTTGTCAATCATAAGTGAGTACGTCT 75045
||| || | | || | ||| ||||||| | ||||||| | || || || || |
Sbjct 43947 AGGTATG--TGCGCTGCGAGGGCTCCTTGATGTAGGTGTCAATTAGCAGCGAATAGGTTT 43890
Query 75046 CCGAATGAATCGACTCGTTGAACGACTGGTACGCGTAGAAAGACCGCGCCTCTGCAATCT 75105
| ||||| || || | | |||| | ||||||| |||| ||||| | |||||
Sbjct 43889 CAGAATGGATGTTTTCCATCATGATCTGGAAACCGTAGAAGCACCGGGCCTCGGGAATCT 43830
Query 75106 GTACATCCTTTGAAAAATTCATGTCGATATTCTCCATGACGATGCCGTCCGAGGCGGCGA 75165
| || || ||| || | ||| || || |||||||||| || ||||| || |
Sbjct 43829 GCACCTCGCCTGAGAAGCGCTCAACGAGGTTTTCGTTGACGATGCCATCAGAGGCAGCAA 43770
Query 75166 AAAAAGCCAG 75175
| || || ||
Sbjct 43769 AGAAGGCGAG 43760
>seq778
Length=18041
Score = 96.9 bits (106), Expect = 4e-15
Identities = 180/261 (69%), Gaps = 5/261 (2%)
Strand=Plus/Plus
Query 117326 GCAGCATCCTTGCCACCAGCAAGACGCGTACCGAATTGTCCACTCGGCTCCAAGAGGTTC 117385
||||||||| ||||||||||||||||| ||| || | ||||| ||||||| |||
Sbjct 2857 GCAGCATCCGAGCCACCAGCAAGACGCGAACCAAAGTTACCACTGGGCTCCAGACAGTTG 2916
Query 117386 AGGTTGTTGGCGCCCACAAAGTTTTGAGCCAAGTTGACAATCGTACCTTGGAGGCTCGCC 117445
| |||||||| || ||||||| || |||| | ||| || ||| || ||
Sbjct 2917 ATGTTGTTGGAACCGACAAAGTCCTGGGCCAGACCAATAATGGTCTGTTGTAGAGATGCT 2976
Query 117446 TCACCATGGTGATACGCCGTCTGCTCCGCCACGTAGCCCGCCAGCTGAGCCACCTTCATG 117505
|| || || || || | || || | | || | || ||||||| | | ||||||||
Sbjct 2977 TCTCCGTGTTGGTAGGAGGTGTGTCCAGAAACAAAACCAGCCAGCTCAACAACCTTCATA 3036
Query 117506 TC--TGACGTCAGGTTCTTCTTGAGGCAGGCATAAATCACCTTGCGCTGACTTGGCTTCA 117563
|| ||| | ||| || ||| ||| || ||||| ||||| ||||||| ||||| |
Sbjct 3037 TCCTGGAC--AATGTTTTTGCTGAAGCACGCGTAAATGACCTTTCGCTGACCAGGCTTGA 3094
Query 117564 GACCATCCGCCACGTGAGGGA 117584
|||||| ||| ||||||
Sbjct 3095 AGCCATCCAGTACG-GAGGGA 3114
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 547206389519000
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |