Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceratocystis_20albifundus_20[genbank_20GCA_5F000813685.1_202015-01- 02] 1,405 sequences; 26,875,327 total letters Query= NC_028112.1 Length=178262 Score E Sequences producing significant alignments: (Bits) Value seq539 242 4e-59 seq576 226 3e-54 seq1207 145 9e-30 seq492 145 9e-30 seq778 96.9 4e-15 >seq539 Length=40911 Score = 242 bits (268), Expect = 4e-59 Identities = 1122/1756 (64%), Gaps = 61/1756 (3%) Strand=Plus/Plus Query 80032 GCCCGCGTCCGCAGATAGTACATGCCCGTCTTGAGGCCCTTCTTCCAGCCGTACAGGTGC 80091 ||| |||| ||||| |||||||||||||||||||| || ||||||||| | |||| Sbjct 16188 GCCTGCGTACGCAGGTAGTACATGCCCGTCTTGAGACCTAGTTTCCAGCCGGCAAAGTGC 16247 Query 80092 ATAGAACTGAGCTTCGCAAGTGTGGGGTTCTCCATGAAGATGTTCAGAGACTGAGACTGA 80151 || ||| ||| | | ||||| | | |||| ||||| |||||||| || || Sbjct 16248 ATGCTGGTGATCTTGCCCATGGTGGGATCTTTCATGTGAATGTTTAGAGACTGCGATTGG 16307 Query 80152 CAGATGAAAGCCCCACGATCTGCCGCCATTTCAATAATTGACTTTTGTGGAATTTCCCAT 80211 |||||||| ||||| || || ||||||| | || || || | ||||||||| Sbjct 16308 TCAATGAAAGCACCACGGTCAGCAGCCATTTGCACAACTGTACGCTGGGAAATTTCCCAA 16367 Query 80212 ACTGTACGATACAC--CTTACGAAGCTCCTCTGGAATG-TCCAGATTTT--GCACACTGC 80266 || || |||| ||| || || | |||||| | ||| || | | | | Sbjct 16368 ACGGTCTTGTACAGAGCTTT--AATATCAGCAGGAATGCTAGGGATGTTCTGAATAGATC 16425 Query 80267 CACCGTCCTTTACAATTTGATTTTTCA-ATT--CAGACGTCCAGACACCAAGCTTGTGCA 80323 || |||| | ||| | || |||| ||| ||||| || | |||||| | | | Sbjct 16426 CATTGTCCGCAATAATGCGGTTCTTCATATTGTCAGAC---CATAAACCAAGATCGACAA 16482 Query 80324 GATCTTTCACA-AGGTGCTTG---TTAATCATGACAAACTCTCCCGCGAGGGTGCGACGC 80379 | || || ||| || | || | || ||||| || || || ||| ||| Sbjct 16483 GGTC----ACGTAGGAGCCAGGGGTTGACCACCTGGAACTCGCCAGCAAGAACGCGGCGC 16538 Query 80380 AGATACAGGTTTGTAGTGTAAGGCTCAAATGCCTCGTTGTTTCCGAGGATCTGAGCCGTG 80439 | || | ||| | ||||| || || || ||| ||||| || || ||||| | ||| Sbjct 16539 TGGTAGATGTTGGATGTGTAGGGTTCGAAGCACTCATTGTTGCCCAGAATCTGCGATGTG 16598 Query 80440 CTCGCCGTCGGCATCGGGCCGACCAACAGTGAATTCCGCAGGCCGTGCTTCTTGATATCC 80499 || || || ||||| || | |||| || ||||| || | || |||| || || | | Sbjct 16599 CTGGCTGTAGGCATGGGTGCAACCAGAAGAGAATTGCGTACACCATGCTGTTTAATCTTC 16658 Query 80500 TCGCGCAAATCTGACCAAAAATCAACCCCAA--CGCT----GTGAC--CCCACATGTCGT 80551 || || | | ||| || || || | || || || ||||||| || Sbjct 16659 TCCTTCAGAGAAGTCCAG---TC--CCACAGGTCACTAGGAGTCACATCCCACATATCAA 16713 Query 80552 GCTGCAAGATGCCCTCCGACGCCGGAGACCCCGCGAACGTCTCGTACGGGCCCTCCGTCT 80611 ||||||||| || | || | || || ||| | | || ||| | |||||||||| Sbjct 16714 ACTGCAAGATACCTTGGGAGACAGGGGAACCCTCATAGGTTGAGTAAGTACCCTCCGTCT 16773 Query 80612 TGGCCAGCTCACACGACTCCATAAGGGCCGCGTGATAAATGCACTCAAAGACGCCCTTGT 80671 ||| | || || | | || || ||||| || ||| ||||| | |||| Sbjct 16774 GGGCGATTTCCATTGAAGCAGTTAGTGCGGCGTGGTAGATGGTTTCAAAAATCTGTTTGT 16833 Query 80672 TCACACCGCGCGCCTGTGGGTCGTCGAACGACAAGCCCATCATCATGAACACGTCAGCCA 80731 | | ||| || | ||| ||||| | || || | | ||| | ||||||| Sbjct 16834 TAAGCTGGCGTGCTTCGGGGGATTCGAAAGGCATGCGGAGAGCAAGGAAAGCATCAGCCA 16893 Query 80732 GGCCCTGAACGCCGATGGCGATCGGGCGGTGGCGCTTGTT-CGATCGCTCGGCCTCCGGA 80790 |||||| || || | | || || ||||||||| |||| | | | | || ||| | Sbjct 16894 AGCCCTGTACACCAACACCAATGGGACGGTGGCGCATGTTGCTGTTG-TGAGCTTCCTGG 16952 Query 80791 ATTGGGTAAAAGTTATT---ATCGATGACGCGGTTCAGGTTGCGTGTAACAACCCGTGTA 80847 | ||||| || ||| ||| |||| |||||| |||||||| |||||| | || Sbjct 16953 ACAGGGTA---GTGATTCACATCAATGATGCGGTTTAGGTTGCGAACAACAACTTGAGTG 17009 Query 80848 ACATCATGAAGTTTCTGAAAGTCGAATTG------GTTCCCCTTCACAAATGCCGGAAGG 80901 || || || || || | |||||| | | ||| | ||| || | |||||| Sbjct 17010 ACTTCGTGTAGCTTTTTAAAGTCATACTCACCCTTGTTGTAGTCCACGAAGGAAGGAAGG 17069 Query 80902 CTCAGGGACGCCAGATTGCACACGGCCACCTCTTCAGCATCTGTAAACTCGACGATTTCC 80961 ||| || || || |||||||| || ||||| |||| | | |||||| || || Sbjct 17070 GCCAGAGATGCTAGGTTGCACACAGCAACCTCGTCAGGGGCACAATACTCGATAATCTCA 17129 Query 80962 GTGCACAAATTAGAAGACTTAATTGTACCCAGGTTTTTCTGGTTTGACTTGGCGTTGCAA 81021 ||||||| || || || ||||| || |||||||| || |||| ||||||| Sbjct 17130 GTGCACAGGTTTGAGCTGCGGATGGTACCTAGATTTTTCTGATTGCTCTTGCGGTTGCAA 17189 Query 81022 GCGTCCTTGTAGCACATGTACGGGGTACCGGTCTCGACCTGTGACTTGAGGATGGCGTCC 81081 ||| ||||| |||| | ||| | || ||||| ||| | || || ||||| | | Sbjct 17190 TGGTCTTTGTAAAGCATGAAAGGGTTGCCAGTCTCAGTCTGGGCCTCCAGAATGGCATAC 17249 Query 81082 CAAATCTCGCGCGCCTTGACCACCTTGCGGAATTTGCCTTCGGCCACATACTTGGCGTAA 81141 || | || | |||||||| ||| |||| || || | | ||||| | || Sbjct 17250 CACAGCTTCTGGGCCTTGACAACCGTGCGACCGCGACCCTCCTTCTCGTACTTTTCATAC 17309 Query 81142 GCTTCGTCGAACTTGGCACCGTGAAGTTCAGTGAGGTCTGGGCACTCGTTAGGGCACATC 81201 | || |||| | || | || | | | | ||||| || || |||||||| Sbjct 17310 AGAGCCTCAAACTCTTCGCCATAGCAATCCGCCAAGCCGGGGCATTCATTGGGGCACATG 17369 Query 81202 AGGTGCCAGTCGGTGTCGTTCTCTACAGCCTTCATGAAAGCGTCAGGGATCCAGAGGGCG 81261 || |||||| | ||||| ||| ||||||||| ||| |||||| ||||| Sbjct 17370 AGAGTCCAGTCCTCATTTTTCTCAACACGCTTCATGAACAAGTCGCAGATCCACAGGGCC 17429 Query 81262 GTGAACAGGTCGCG-GCAGCGCGCCTCCTCATCACCCTGGTTGAGGCGCAACTCGAGAAA 81320 ||| ||||| || ||| || | || || | || ||||| |||||| ||||| || Sbjct 17430 AAGAATAGGTCACGAGCA-CGGACTTCTTCCTTTCCGTGGTTCTTGCGCAAGTCGAGGAA 17488 Query 81321 GTCCATGATGTCCGCATGCCATGGCTCCAGATACACGGCGATCGACCCCTTGCGACGG-- 81378 || | || || |||||||||||||| || || | ||| | | || || | Sbjct 17489 CTCGAAGACATCAGCATGCCATGGCTCGAGGTAAATGGCAAAGGCTCCAGGTCGCTTGTT 17548 Query 81379 -CCACCCTGGTTGACGTAACGGGCAGTCGCGTTAAATACACGCAACATAGGGATGATACC 81437 |||||||||| || ||||||||||| ||| || ||||| | ||| || | |||||| Sbjct 17549 TCCACCCTGGTCAACATAACGGGCAGTGTTGTTGAAAACACGTAGCATGGGAACGATACC 17608 Query 81438 ATCTGACTGACCGTTCGTACCCACGATACGCGACCCCTTGGCGCG--CACCTTGCTGATT 81495 | || |||||| ||||| | || || || |||| || || || ||| Sbjct 17609 GTTCGAAGTACCGTTAGTACCAGCAATGTAAGAGCCAGTGGCACGAATACGGTGGACATT 17668 Query 81496 GAAAGACCGATGCCACCTGACCACTTTGAAATCTGAGCACACCGGTTCATGGTCTCATAA 81555 | |||||||| || || | | ||| |||||| ||||| || | ||| || ||| Sbjct 17669 G--AGACCGATACCGCCAGCCATCTTGGAAATCATGGCACAAGTCTTGAGGGTATCGTAA 17726 Query 81556 ATTCCCTCGATGCTATCTTTTTTCATGTCAAGCAAGAAACAGCTTGACATCTGAGGGCTT 81615 || ||||||||||| || | ||||||||| | | ||| || |||| |||| || | Sbjct 17727 ATGCCCTCGATGCTGTCATCTTTCATGTCGACTAGGAAGCACGAAGACAACTGA--GCCT 17784 Query 81616 TTTGAG--CCGGCATTGAACAGTGTTGGGGTCGCGTGAATGAAATAACGGTTTGACATCA 81673 | | || ||||| || || || || | |||||| |||| | | | ||||| | Sbjct 17785 GGGGGGTACCAGCATTAAAGAGCGTAGGTGATGCGTGAGTGAAGAACTTGCTGGACATAA 17844 Query 81674 GGTCATAGGTTTCCTTGACGCGTGGAATATCGTCACCGTGAATACCGATAGCTACACGCA 81733 || |||||||| || ||| | | |||||| |||||| | ||| ||||||| Sbjct 17845 AGTTGTAGGTTTCAAGCACACGTTCGACTTTGTCACCCCAAATACCCACAGCAACACGCA 17904 Query 81734 TAAACATGTACTGGGG 81749 | | ||||| |||||| Sbjct 17905 TTATCATGTGCTGGGG 17920 >seq576 Length=37320 Score = 226 bits (250), Expect = 3e-54 Identities = 188/230 (82%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 |||||||||||||||||||| || || |||||||||||||| || ||||| ||||| Sbjct 12709 ATGCAAATCTTTGTCAAGACCCTGACGGGCAAGACTATTACACTCGAGGTCGAGTCTTCG 12768 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 |||| |||| ||| | ||| | || || |||||||||||||| || ||||| |||||| Sbjct 12769 GATACTATTGACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGTATCCCTCCTGACCAG 12828 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 |||||||| || |||||||| |||||||||||||||| ||| ||||| | ||||| || Sbjct 12829 CAGCGTCTCATCTTTGCTGGAAAGCAACTCGAGGATGGTCGCACCCTCTCTGACTACAAC 12888 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGGACA 27635 |||| |||||||||||||||||| | || ||||||| || ||||| || Sbjct 12889 ATCCAGAAGGAATCCACTCTTCATTTGGTTCTGCGTCTGCGTGGTGGCCA 12938 Score = 194 bits (214), Expect = 2e-44 Identities = 179/227 (79%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 |||||||||||||||||||| || || |||||||||||||| || ||||| ||||| Sbjct 12481 ATGCAAATCTTTGTCAAGACCCTGACGGGCAAGACTATTACACTCGAGGTCGAGTCTTCG 12540 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 |||| |||| ||| | ||| | || || ||||| |||||||| || ||||| || ||| Sbjct 12541 GATACTATTGACAATGTCAAGTCCAAGATCCAGGATAAGGAGGGTATCCCTCCGGATCAG 12600 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 |||||||| || |||||||| ||||| || ||||| | || ||||| | ||||| || Sbjct 12601 CAGCGTCTCATCTTTGCTGGAAAGCAGCTTGAGGACGGCCGCACCCTCTCTGACTACAAC 12660 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 |||| |||||||| ||||||||| | || ||||||| || ||||| Sbjct 12661 ATCCAGAAGGAATCTACTCTTCATTTGGTTCTGCGTCTGCGTGGTGG 12707 Score = 170 bits (188), Expect = 2e-37 Identities = 168/217 (77%), Gaps = 0/217 (0%) Strand=Plus/Plus Query 27416 TTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGTGATAGCATTG 27475 |||||||||| |||||||||||||| || || || || || ||||| ||||| ||| | Sbjct 12263 TTGTCAAGACCCTTACCGGCAAGACCATCACCCTCGAAGTCGAGTCCTCTGATACCATCG 12322 Query 27476 CAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAA 27535 ||| | ||| | || || ||||| |||||||| || ||||| || ||||||||||| | Sbjct 12323 ACAATGTCAAGTCCAAGATCCAGGATAAGGAGGGTATCCCTCCGGATCAGCAGCGTCTCA 12382 Query 27536 TTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAGG 27595 ||||||| || ||||| || ||||| | || ||||| | ||||| || |||| |||| Sbjct 12383 TTTTTGCCGGAAAGCAGCTTGAGGACGGCCGCACCCTGTCCGACTACAACATCCAGAAGG 12442 Query 27596 AATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 |||| |||||||| | || ||||||| || ||||| Sbjct 12443 AATCTACTCTTCACTTGGTTCTGCGTCTGCGTGGTGG 12479 Score = 159 bits (176), Expect = 4e-34 Identities = 157/203 (77%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 27430 ACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGTGATAGCATTGCAAATTTGAAGGCT 27489 ||||||||||| || || || ||||| ||||| |||| |||| || | ||| || Sbjct 11993 ACCGGCAAGACCATCACCCTCGAGGTGGAGTCTTCGGATACTATTGACAACGTTAAGTCT 12052 Query 27490 AAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGTAAG 27549 || || |||||||||||||| |||||||| |||||||||||||| ||||| || || ||| Sbjct 12053 AAGATCCAGGACAAGGAGGGTATTCCTCCGGACCAGCAGCGTCTCATTTTCGCCGGAAAG 12112 Query 27550 CAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAGGAATCCACTCTTCAT 27609 || || ||||||| || ||||| | ||||| || |||| ||||| || ||||| ||| Sbjct 12113 CAGCTTGAGGATGGCCGCACCCTGTCCGACTACAACATCCAGAAGGAGTCTACTCTCCAT 12172 Query 27610 CTAGTCTTGCGTCTTCGCGGTGG 27632 ||||| | || || || ||||| Sbjct 12173 CTAGTGCTCCGCCTGCGTGGTGG 12195 >seq1207 Length=77990 Score = 145 bits (160), Expect = 9e-30 Identities = 146/190 (77%), Gaps = 0/190 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| || || |||||||| ||||| || ||||| ||||| || ||||||||||| Sbjct 69070 ATGCAGATTTTCGTCAAGACCCTTACGGGTAAGACGATTACCCTCGAGGTTGAGTCCTCG 69129 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | || | ||| | ||| |||| ||||||||||||||||| ||||| || |||||| Sbjct 69130 GACACTATCGACAATGTCAAGTCTAAGATTCAGGACAAGGAGGGCATTCCCCCGGACCAG 69189 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 ||||| || || || ||||| ||||| || ||||||| || ||||| | ||||| || Sbjct 69190 CAGCGCCTGATCTTCGCTGGCAAGCAGCTGGAGGATGGCCGCACCCTGTCTGACTACAAC 69249 Query 27586 GTCCAAAAGG 27595 | || |||| Sbjct 69250 ATTCAGAAGG 69259 >seq492 Length=47418 Score = 145 bits (160), Expect = 9e-30 Identities = 163/218 (75%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 27415 TTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGTGATAGCATT 27474 || |||||||| || || || ||||| ||||| || ||||| ||||| || | || Sbjct 44550 TTCGTCAAGACCCTGACGGGTAAGACCATTACCCTGGAGGTCGAGTCTTCGGACACGATC 44609 Query 27475 GCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTA 27534 | || | ||| | || || |||||||||||||| ||||| || ||||||||||| | Sbjct 44610 GACAACGTCAAGTCCAAGATCCAGGACAAGGAGGGCATTCCCCCGGACCAGCAGCGCTTG 44669 Query 27535 ATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAG 27594 || |||||||| ||||| || ||||||| || || || | ||||| || |||| ||| Sbjct 44670 ATCTTTGCTGGCAAGCAGCTTGAGGATGGCCGCACTCTGTCCGACTACAACATCCAGAAG 44729 Query 27595 GAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 || |||||||| || || ||| |||| || || ||||| Sbjct 44730 GAGTCCACTCTCCACCTTGTCCTGCGCCTGCGTGGTGG 44767 >seq778 Length=18041 Score = 96.9 bits (106), Expect = 4e-15 Identities = 171/247 (69%), Gaps = 2/247 (1%) Strand=Plus/Minus Query 31983 GGACGGCCTCAAGCCTTCACAGCGCAAGGTGATATACGCCTGCCTCAAGAAGAACCT-GT 32041 ||| ||| |||||||| ||||| ||||| || ||||| ||| ||| || ||| | || Sbjct 3102 GGATGGCTTCAAGCCTGGTCAGCGAAAGGTCATTTACGCGTGCTTCAGCAAAAACATTGT 3043 Query 32042 CGAGTGACATGAAGGTGGCGCAGCTGTCGGGCTACGTGGCAGAGCAAACGGCCTATCACC 32101 | || || |||||||| | ||||| | || | || | | || || |||| || | Sbjct 3042 CCAG-GATATGAAGGTTGTTGAGCTGGCTGGTTTTGTTTCTGGACACACCTCCTACCAAC 2984 Query 32102 ACGGCGAGGCGTCGCTCCAGGGCACCATTGTCAACCTTGCTCAGAACTTTGTCGGTGCAA 32161 |||| || || || || || |||||| | || || ||| ||||||||||| | | Sbjct 2983 ACGGAGAAGCATCTCTACAACAGACCATTATTGGTCTGGCCCAGGACTTTGTCGGTTCCA 2924 Query 32162 ATAACCTGAACTTACTCGAGCCATCTGGACAGTTTGGGACCCGGCTCGCCGGTGGCAAGG 32221 | ||| | |||| || ||||| ||| | ||||| | || || || |||||| || Sbjct 2923 ACAACATCAACTGTCTGGAGCCCAGTGGTAACTTTGGTTCGCGTCTTGCTGGTGGCTCGG 2864 Query 32222 ATGCTGC 32228 ||||||| Sbjct 2863 ATGCTGC 2857 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 570300383923600