Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceratocystis_20albifundus_20[genbank_20GCA_5F000813685.1_202015-01- 02] 1,405 sequences; 26,875,327 total letters Query= NC_028491.1 Length=98392 Score E Sequences producing significant alignments: (Bits) Value seq576 89.7 3e-13 seq492 84.2 1e-11 >seq576 Length=37320 Score = 89.7 bits (98), Expect = 3e-13 Identities = 100/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548 ||||||| |||||||| |||||| ||||| || ||||| || || || || || || Sbjct 12926 AGACGCAGAACCAAATGAAGAGTGGATTCCTTCTGGATGTTGTAGTCAGAGAGGGTGCGA 12867 Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608 | || || ||||| || || ||||| || | |||||| ||||| || || | |||||| Sbjct 12866 CCATCCTCGAGTTGCTTTCCAGCAAAGATGAGACGCTGCTGGTCAGGAGGGATACCCTCC 12807 Query 34609 TTGTCTGTGATCTT 34622 ||||| |||||| Sbjct 12806 TTGTCCTGGATCTT 12793 Score = 84.2 bits (92), Expect = 1e-11 Identities = 99/134 (74%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548 || || | ||| | ||||||||| |||||| || ||||| || || || || || || Sbjct 12186 AGGCGGAGCACTAGATGGAGAGTAGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGG 12127 Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608 | || ||||| || || ||||| || || | |||||| |||||||| || | |||||| Sbjct 12126 CCATCCTCAAGCTGCTTTCCGGCGAAAATGAGACGCTGCTGGTCCGGAGGAATACCCTCC 12067 Query 34609 TTGTCTGTGATCTT 34622 ||||| |||||| Sbjct 12066 TTGTCCTGGATCTT 12053 >seq492 Length=47418 Score = 84.2 bits (92), Expect = 1e-11 Identities = 90/119 (76%), Gaps = 0/119 (0%) Strand=Plus/Minus Query 34504 TGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGCTCGTCTTCAAGTTGT 34563 ||||||||| |||||| || ||||| || || || || || || | || ||||| || Sbjct 44743 TGGAGAGTGGACTCCTTCTGGATGTTGTAGTCGGACAGAGTGCGGCCATCCTCAAGCTGC 44684 Query 34564 TTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCCTTGTCTGTGATCTT 34622 || || ||||| || || ||||| |||||||| || | ||||||||||| |||||| Sbjct 44683 TTGCCAGCAAAGATCAAGCGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCCTGGATCTT 44625 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 314724210747365