Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ceratocystis_20albifundus_20[genbank_20GCA_5F000813685.1_202015-01-
02] 1,405 sequences; 26,875,327 total letters
Query= NC_029304.1
Length=111246
Score E
Sequences producing significant alignments: (Bits) Value
seq576 86.0 4e-12
>seq576
Length=37320
Score = 86.0 bits (94), Expect = 4e-12
Identities = 158/230 (69%), Gaps = 4/230 (2%)
Strand=Plus/Plus
Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849
|||||||| ||||| || || || || || || ||||||| | || ||||| |
Sbjct 12709 ATGCAAATCTTTGTCAAGACCCTGACGGGCAAGACTATTACACTCGAGGTCGAGTCTTCG 12768
Query 27850 GA--CGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGC 27907
|| | || ||||| ||||| || || ||||| || ||| | || || |
Sbjct 12769 GATACTATTGACAAT--GTCAAGTCCAAGATCCAGGACAAGGAGGGTATCCCTCCTGACC 12826
Query 27908 AGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACA 27967
|||| || | || ||||| ||||| ||| | || || | |||| | | || || ||||
Sbjct 12827 AGCAGCGTCTCATCTTTGCTGGAAAGCAACTCGAGGATGGTCGCACCCTCTCTGACTACA 12886
Query 27968 ACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGGC 28017
||||||| || || |||| | ||||||||| ||||| ||||||| |||
Sbjct 12887 ACATCCAGAAGGAATCCACTCTTCATTTGGTTCTGCGTCTGCGTGGTGGC 12936
Score = 84.2 bits (92), Expect = 2e-11
Identities = 87/114 (76%), Gaps = 0/114 (0%)
Strand=Plus/Plus
Query 27903 GGAGCAGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGA 27962
||| ||||| || | |||||||||||||| || | || |||| |||| | |||||||
Sbjct 12366 GGATCAGCAGCGTCTCATTTTTGCCGGAAAGCAGCTTGAGGACGGCCGCACCCTGTCCGA 12425
Query 27963 TTACAACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016
||||||||||| || || ||| | || |||||| ||||| ||||||| ||
Sbjct 12426 CTACAACATCCAGAAGGAATCTACTCTTCACTTGGTTCTGCGTCTGCGTGGTGG 12479
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 355856306412435
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |