Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceratocystis_20albifundus_20[genbank_20GCA_5F000813685.1_202015-01- 02] 1,405 sequences; 26,875,327 total letters Query= NC_029692.1 Length=362276 Score E Sequences producing significant alignments: (Bits) Value seq492 154 3e-32 seq1207 150 4e-31 seq576 136 9e-27 >seq492 Length=47418 Score = 154 bits (170), Expect = 3e-32 Identities = 156/203 (77%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 ||||||||||| ||||||||||| || |||||||| || || | || || | ||||| Sbjct 44752 AGGACAAGGTGGAGAGTGGACTCCTTCTGGATGTTGTAGTCGGACAGAGTGCGGCCATCC 44693 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 || ||||||||||| || ||||| | ||| || ||||| || |||| || ||||||||| Sbjct 44692 TCAAGCTGCTTGCCAGCAAAGATCAAGCGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCC 44633 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 |||||||| || ||||| ||||| ||||| || || ||||| || || || ||| Sbjct 44632 TGGATCTTGGACTTGACGTTGTCGATCGTGTCCGAAGACTCGACCTCCAGGGTAATGGTC 44573 Query 211083 TTTCCCGTGAGAGTCTTTACAAA 211105 || ||||| || ||||| || || Sbjct 44572 TTACCCGTCAGGGTCTTGACGAA 44550 >seq1207 Length=77990 Score = 150 bits (166), Expect = 4e-31 Identities = 148/191 (77%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 210927 TTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATA 210986 || || ||||| || || | ||||| | ||||| |||||||||||||| |||||||| Sbjct 69257 TTCTGAATGTTGTAGTCAGACAGGGTGCGGCCATCCTCCAGCTGCTTGCCAGCGAAGATC 69198 Query 210987 AGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCG 211046 ||||| || ||||| || |||| || ||||||||||| ||||| || || || ||| Sbjct 69197 AGGCGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCCTGAATCTTAGACTTGACATTGTCG 69138 Query 211047 ATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTGAGAGTCTTTACAAAC 211106 || ||||| ||| ||||||||||| || |||||||| ||||| || ||||| || || Sbjct 69137 ATAGTGTCCGAGGACTCAACCTCGAGGGTAATCGTCTTACCCGTAAGGGTCTTGACGAAA 69078 Query 211107 ACCTGCATTTT 211117 | |||||| || Sbjct 69077 ATCTGCATCTT 69067 >seq576 Length=37320 Score = 136 bits (150), Expect = 9e-27 Identities = 152/203 (75%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 210912 TGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCTGC 210971 ||||||||||| || || |||||||| || || | ||||| | ||||| || || ||| Sbjct 12911 TGAAGAGTGGATTCCTTCTGGATGTTGTAGTCAGAGAGGGTGCGACCATCCTCGAGTTGC 12852 Query 210972 TTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTT 211031 || || || ||||| || || || ||||||||||| | || ||||||||||||||||| Sbjct 12851 TTTCCAGCAAAGATGAGACGCTGCTGGTCAGGAGGGATACCCTCCTTGTCCTGGATCTTG 12792 Query 211032 TGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTG 211091 || || || || || || || || || |||||||| || || ||||| ||||| Sbjct 12791 GACTTGACATTGTCAATAGTATCCGAAGACTCGACCTCGAGTGTAATAGTCTTGCCCGTC 12732 Query 211092 AGAGTCTTTACAAACACCTGCAT 211114 || ||||| ||||| | ||||| Sbjct 12731 AGGGTCTTGACAAAGATTTGCAT 12709 Score = 127 bits (140), Expect = 5e-24 Identities = 141/188 (75%), Gaps = 0/188 (0%) Strand=Plus/Minus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || || || || ||||| ||||| || |||||||| || || | ||||| | ||||| Sbjct 12180 AGCACTAGATGGAGAGTAGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCATCC 12121 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 || |||||||| || ||||| || || || || ||||| ||||||| || ||||||||| Sbjct 12120 TCAAGCTGCTTTCCGGCGAAAATGAGACGCTGCTGGTCCGGAGGAATACCCTCCTTGTCC 12061 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 |||||||| || ||||| || || || || || || |||||||| ||||| ||| Sbjct 12060 TGGATCTTAGACTTAACGTTGTCAATAGTATCCGAAGACTCCACCTCGAGGGTGATGGTC 12001 Query 211083 TTTCCCGT 211090 || || || Sbjct 12000 TTGCCGGT 11993 Score = 125 bits (138), Expect = 2e-23 Identities = 149/202 (74%), Gaps = 0/202 (0%) Strand=Plus/Minus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || || | ||||||||| || || || |||||||| || || | ||||| | || || Sbjct 12464 AGAACCAAGTGAAGAGTAGATTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCGTCC 12405 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 || |||||||| || || || || || || || || || ||||| | || ||||| ||| Sbjct 12404 TCAAGCTGCTTTCCGGCAAAAATGAGACGCTGCTGATCCGGAGGGATACCCTCCTTATCC 12345 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 |||||||| || || || |||||||| |||||| || || ||||| ||||| ||| Sbjct 12344 TGGATCTTGGACTTGACATTGTCGATGGTATCAGAGGACTCGACTTCGAGGGTGATGGTC 12285 Query 211083 TTTCCCGTGAGAGTCTTTACAA 211104 || || || || ||||| |||| Sbjct 12284 TTGCCGGTAAGGGTCTTGACAA 12263 Score = 118 bits (130), Expect = 2e-21 Identities = 148/203 (73%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 210912 TGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCTGC 210971 |||||||| || || || |||||||| || || | ||||| | || || || |||||| Sbjct 12683 TGAAGAGTAGATTCCTTCTGGATGTTGTAGTCAGAGAGGGTGCGGCCGTCCTCAAGCTGC 12624 Query 210972 TTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTT 211031 || || || ||||| || || || || || ||||| | || ||||| ||||||||||| Sbjct 12623 TTTCCAGCAAAGATGAGACGCTGCTGATCCGGAGGGATACCCTCCTTATCCTGGATCTTG 12564 Query 211032 TGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTG 211091 || || || || || || || || || |||||||| || || ||||| ||||| Sbjct 12563 GACTTGACATTGTCAATAGTATCCGAAGACTCGACCTCGAGTGTAATAGTCTTGCCCGTC 12504 Query 211092 AGAGTCTTTACAAACACCTGCAT 211114 || ||||| ||||| | ||||| Sbjct 12503 AGGGTCTTGACAAAGATTTGCAT 12481 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1159131133452825