Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ceratocystis_20albifundus_20[genbank_20GCA_5F000813685.1_202015-01-
02] 1,405 sequences; 26,875,327 total letters
Query= NC_029692.1
Length=362276
Score E
Sequences producing significant alignments: (Bits) Value
seq492 154 3e-32
seq1207 150 4e-31
seq576 136 9e-27
>seq492
Length=47418
Score = 154 bits (170), Expect = 3e-32
Identities = 156/203 (77%), Gaps = 0/203 (0%)
Strand=Plus/Minus
Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962
||||||||||| ||||||||||| || |||||||| || || | || || | |||||
Sbjct 44752 AGGACAAGGTGGAGAGTGGACTCCTTCTGGATGTTGTAGTCGGACAGAGTGCGGCCATCC 44693
Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022
|| ||||||||||| || ||||| | ||| || ||||| || |||| || |||||||||
Sbjct 44692 TCAAGCTGCTTGCCAGCAAAGATCAAGCGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCC 44633
Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082
|||||||| || ||||| ||||| ||||| || || ||||| || || || |||
Sbjct 44632 TGGATCTTGGACTTGACGTTGTCGATCGTGTCCGAAGACTCGACCTCCAGGGTAATGGTC 44573
Query 211083 TTTCCCGTGAGAGTCTTTACAAA 211105
|| ||||| || ||||| || ||
Sbjct 44572 TTACCCGTCAGGGTCTTGACGAA 44550
>seq1207
Length=77990
Score = 150 bits (166), Expect = 4e-31
Identities = 148/191 (77%), Gaps = 0/191 (0%)
Strand=Plus/Minus
Query 210927 TTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATA 210986
|| || ||||| || || | ||||| | ||||| |||||||||||||| ||||||||
Sbjct 69257 TTCTGAATGTTGTAGTCAGACAGGGTGCGGCCATCCTCCAGCTGCTTGCCAGCGAAGATC 69198
Query 210987 AGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCG 211046
||||| || ||||| || |||| || ||||||||||| ||||| || || || |||
Sbjct 69197 AGGCGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCCTGAATCTTAGACTTGACATTGTCG 69138
Query 211047 ATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTGAGAGTCTTTACAAAC 211106
|| ||||| ||| ||||||||||| || |||||||| ||||| || ||||| || ||
Sbjct 69137 ATAGTGTCCGAGGACTCAACCTCGAGGGTAATCGTCTTACCCGTAAGGGTCTTGACGAAA 69078
Query 211107 ACCTGCATTTT 211117
| |||||| ||
Sbjct 69077 ATCTGCATCTT 69067
>seq576
Length=37320
Score = 136 bits (150), Expect = 9e-27
Identities = 152/203 (75%), Gaps = 0/203 (0%)
Strand=Plus/Minus
Query 210912 TGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCTGC 210971
||||||||||| || || |||||||| || || | ||||| | ||||| || || |||
Sbjct 12911 TGAAGAGTGGATTCCTTCTGGATGTTGTAGTCAGAGAGGGTGCGACCATCCTCGAGTTGC 12852
Query 210972 TTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTT 211031
|| || || ||||| || || || ||||||||||| | || |||||||||||||||||
Sbjct 12851 TTTCCAGCAAAGATGAGACGCTGCTGGTCAGGAGGGATACCCTCCTTGTCCTGGATCTTG 12792
Query 211032 TGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTG 211091
|| || || || || || || || || |||||||| || || ||||| |||||
Sbjct 12791 GACTTGACATTGTCAATAGTATCCGAAGACTCGACCTCGAGTGTAATAGTCTTGCCCGTC 12732
Query 211092 AGAGTCTTTACAAACACCTGCAT 211114
|| ||||| ||||| | |||||
Sbjct 12731 AGGGTCTTGACAAAGATTTGCAT 12709
Score = 127 bits (140), Expect = 5e-24
Identities = 141/188 (75%), Gaps = 0/188 (0%)
Strand=Plus/Minus
Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962
|| || || || ||||| ||||| || |||||||| || || | ||||| | |||||
Sbjct 12180 AGCACTAGATGGAGAGTAGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCATCC 12121
Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022
|| |||||||| || ||||| || || || || ||||| ||||||| || |||||||||
Sbjct 12120 TCAAGCTGCTTTCCGGCGAAAATGAGACGCTGCTGGTCCGGAGGAATACCCTCCTTGTCC 12061
Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082
|||||||| || ||||| || || || || || || |||||||| ||||| |||
Sbjct 12060 TGGATCTTAGACTTAACGTTGTCAATAGTATCCGAAGACTCCACCTCGAGGGTGATGGTC 12001
Query 211083 TTTCCCGT 211090
|| || ||
Sbjct 12000 TTGCCGGT 11993
Score = 125 bits (138), Expect = 2e-23
Identities = 149/202 (74%), Gaps = 0/202 (0%)
Strand=Plus/Minus
Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962
|| || | ||||||||| || || || |||||||| || || | ||||| | || ||
Sbjct 12464 AGAACCAAGTGAAGAGTAGATTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCGTCC 12405
Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022
|| |||||||| || || || || || || || || || ||||| | || ||||| |||
Sbjct 12404 TCAAGCTGCTTTCCGGCAAAAATGAGACGCTGCTGATCCGGAGGGATACCCTCCTTATCC 12345
Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082
|||||||| || || || |||||||| |||||| || || ||||| ||||| |||
Sbjct 12344 TGGATCTTGGACTTGACATTGTCGATGGTATCAGAGGACTCGACTTCGAGGGTGATGGTC 12285
Query 211083 TTTCCCGTGAGAGTCTTTACAA 211104
|| || || || ||||| ||||
Sbjct 12284 TTGCCGGTAAGGGTCTTGACAA 12263
Score = 118 bits (130), Expect = 2e-21
Identities = 148/203 (73%), Gaps = 0/203 (0%)
Strand=Plus/Minus
Query 210912 TGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCTGC 210971
|||||||| || || || |||||||| || || | ||||| | || || || ||||||
Sbjct 12683 TGAAGAGTAGATTCCTTCTGGATGTTGTAGTCAGAGAGGGTGCGGCCGTCCTCAAGCTGC 12624
Query 210972 TTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTT 211031
|| || || ||||| || || || || || ||||| | || ||||| |||||||||||
Sbjct 12623 TTTCCAGCAAAGATGAGACGCTGCTGATCCGGAGGGATACCCTCCTTATCCTGGATCTTG 12564
Query 211032 TGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTG 211091
|| || || || || || || || || |||||||| || || ||||| |||||
Sbjct 12563 GACTTGACATTGTCAATAGTATCCGAAGACTCGACCTCGAGTGTAATAGTCTTGCCCGTC 12504
Query 211092 AGAGTCTTTACAAACACCTGCAT 211114
|| ||||| ||||| | |||||
Sbjct 12503 AGGGTCTTGACAAAGATTTGCAT 12481
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1159131133452825
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |