Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceratocystis_20albifundus_20[genbank_20GCA_5F000813685.1_202015-01- 02] 1,405 sequences; 26,875,327 total letters Query= NC_030230.1 Length=372707 Score E Sequences producing significant alignments: (Bits) Value seq492 141 2e-28 seq576 113 1e-19 seq1207 107 5e-18 >seq492 Length=47418 Score = 141 bits (156), Expect = 2e-28 Identities = 159/213 (75%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551 ||| || | ||||||||||||||||||||| || || |||| ||||| |||| || ||| Sbjct 44762 ACGCAGGCGCAGGACAAGGTGGAGAGTGGACTCCTTCTGGATGTTGTAGTCGGACAGAGT 44703 Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611 | ||||| || |||||||| ||||| ||||| | || || ||||| || ||||| || Sbjct 44702 GCGGCCATCCTCAAGCTGCTTGCCAGCAAAGATCAAGCGCTGCTGGTCCGGGGGAATGCC 44643 Query 225612 TTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAA 225671 |||||||| |||||||| ||| || ||||| ||||| || | || || || | Sbjct 44642 CTCCTTGTCCTGGATCTTGGACTTGACGTTGTCGATCGTGTCCGAAGACTCGACCTCCAG 44583 Query 225672 CGTGATCGTCTTGCCCGTCAAAGTTTTTATGAA 225704 || || ||||| ||||||| || || | ||| Sbjct 44582 GGTAATGGTCTTACCCGTCAGGGTCTTGACGAA 44550 >seq576 Length=37320 Score = 113 bits (124), Expect = 1e-19 Identities = 158/222 (71%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551 ||| || | ||| || | || ||||||||||| || |||| ||||| || | | || Sbjct 12930 ACGCAGACGCAGAACCAAATGAAGAGTGGATTCCTTCTGGATGTTGTAGTCAGAGAGGGT 12871 Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611 | ||||| || || ||||| ||||| ||||| || || || ||||| || || ||||| Sbjct 12870 GCGACCATCCTCGAGTTGCTTTCCAGCAAAGATGAGACGCTGCTGGTCAGGAGGGATACC 12811 Query 225612 TTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAA 225671 |||||||| |||||||| ||| ||| || || || || || | || || || | Sbjct 12810 CTCCTTGTCCTGGATCTTGGACTTGACATTGTCAATAGTATCCGAAGACTCGACCTCGAG 12751 Query 225672 CGTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 || || ||||||||||||| || || | || | |||||| Sbjct 12750 TGTAATAGTCTTGCCCGTCAGGGTCTTGACAAAGATTTGCAT 12709 Score = 98.7 bits (108), Expect = 2e-15 Identities = 155/222 (70%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551 ||| || | ||| || | || ||||| ||||| || |||| ||||| || | | || Sbjct 12702 ACGCAGACGCAGAACCAAATGAAGAGTAGATTCCTTCTGGATGTTGTAGTCAGAGAGGGT 12643 Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611 | || || || |||||||| ||||| ||||| || || || || || || || ||||| Sbjct 12642 GCGGCCGTCCTCAAGCTGCTTTCCAGCAAAGATGAGACGCTGCTGATCCGGAGGGATACC 12583 Query 225612 TTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAA 225671 ||||| || |||||||| ||| ||| || || || || || | || || || | Sbjct 12582 CTCCTTATCCTGGATCTTGGACTTGACATTGTCAATAGTATCCGAAGACTCGACCTCGAG 12523 Query 225672 CGTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 || || ||||||||||||| || || | || | |||||| Sbjct 12522 TGTAATAGTCTTGCCCGTCAGGGTCTTGACAAAGATTTGCAT 12481 >seq1207 Length=77990 Score = 107 bits (118), Expect = 5e-18 Identities = 133/182 (73%), Gaps = 0/182 (0%) Strand=Plus/Minus Query 225535 TTGTAATCGGCCAAAGTTCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGT 225594 ||||| || | || || | ||||| || |||||||| ||||||||||| || || || Sbjct 69248 TTGTAGTCAGACAGGGTGCGGCCATCCTCCAGCTGCTTGCCAGCGAAGATCAGGCGCTGC 69189 Query 225595 TGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCT 225654 ||||| || ||||| || |||||||| || ||||| ||| ||| ||||| ||||| Sbjct 69188 TGGTCCGGGGGAATGCCCTCCTTGTCCTGAATCTTAGACTTGACATTGTCGATAGTGTCC 69129 Query 225655 GAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCATT 225714 |||| || || || | || |||||||| ||||| | || || | ||| | ||||| Sbjct 69128 GAGGACTCAACCTCGAGGGTAATCGTCTTACCCGTAAGGGTCTTGACGAAAATCTGCATC 69069 Query 225715 TT 225716 || Sbjct 69068 TT 69067 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1192509732575070