Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceratocystis_20albifundus_20[genbank_20GCA_5F000813685.1_202015-01- 02] 1,405 sequences; 26,875,327 total letters Query= NC_031033.1 Length=217124 Score E Sequences producing significant alignments: (Bits) Value seq539 192 8e-44 >seq539 Length=40911 Score = 192 bits (212), Expect = 8e-44 Identities = 580/885 (66%), Gaps = 32/885 (4%) Strand=Plus/Plus Query 77950 CCAATCCAGGGCATTCATTTGGGCACATCAATGACCAGTCACCATCTTCCTTAACTCGTT 78009 |||| || ||||||||||| |||||||| | | |||||| ||| || || ||| || | Sbjct 17341 CCAAGCCGGGGCATTCATTGGGGCACATGAGAGTCCAGTCCTCATTTTTCTCAACACGCT 17400 Query 78010 TCATAAAGAGATCAGGTATCCATAGAGCAATAAATAGATCTCGGGTTCTATGTTCTTCAT 78069 |||| || | || ||||| || || | ||||| || || | | |||||| | Sbjct 17401 TCATGAACAAGTCGCAGATCCACAGGGCCAAGAATAGGTCACGAGCACGGACTTCTTCCT 17460 Query 78070 TTCCTGTATTCTTTTTAAGATCGAGAAACTCCATAATATCAGAATGCCATGGTTCTAGAT 78129 |||| ||||| | ||||| ||||| | | ||||| ||||||||| || || | Sbjct 17461 TTCCGTGGTTCTTGCGCAAGTCGAGGAACTCGAAGACATCAGCATGCCATGGCTCGAGGT 17520 Query 78130 ATATTGCCATAACTCCAGGTCGTTTATTACCTCCCTGATCTATATATCTGGCGGTGTTAT 78189 | || || | |||||||||| || || || ||||| || | ||| | ||| ||||| | Sbjct 17521 AAATGGCAAAGGCTCCAGGTCGCTTGTTTCCACCCTGGTCAACATAACGGGCAGTGTTGT 17580 Query 78190 TATAAACTCTCAACATTGGAATAATACCGTTAGATGTTCCATTTGTTCCAGAAATATAAC 78249 | |||| | | ||| |||| |||||||| || || || || || |||| ||| ||| Sbjct 17581 TGAAAACACGTAGCATGGGAACGATACCGTTCGAAGTACCGTTAGTACCAGCAATGTAAG 17640 Query 78250 TTCCACTTGCGCGAATA--TTACTAATGGATATCCCTATTCCTCCTGCCATCTTAGATAT 78307 ||| | || |||||| | || || | || || || || |||||||| || || Sbjct 17641 AGCCAGTGGCACGAATACGGTGGACATTGAGA--CCGATACCGCCAGCCATCTTGGAAAT 17698 Query 78308 TAGAGCGCAACGTTTCAATGTATCGTAGATACCCTCTATACTGTCATCCATCATGTTAAG 78367 | || ||| || | |||||||| || ||||| || |||||||| |||||| | Sbjct 17699 CATGGCACAAGTCTTGAGGGTATCGTAAATGCCCTCGATGCTGTCATCTTTCATGTCGAC 17758 Query 78368 AAGAAAACAGCTAGACATTTGATGATGAACAGTTCCTGCATTAAATAATGTCGGAGATGC 78427 || || || ||||| ||| || || || |||||||| | || || ||||| Sbjct 17759 TAGGAAGCACGAAGACAACTGAGCCTGGGGGGTACCAGCATTAAAGAGCGTAGGTGATGC 17818 Query 78428 ATGCGTAAACCATTTTTCAGAAAGTAGATTGTATGTTTCAATAGCTGATT---CTATGT- 78483 || || || | || || | | ||||| ||||||| | || || ||| Sbjct 17819 GTGAGTGAAGAACTTGCTGGACATAAAGTTGTAGGTTTCAAGCACACGTTCGACTTTGTC 17878 Query 78484 --CCCATTGATGAATTCCTACCGCTACACGCATCAACATATGCTGAGGTCTTTCAACCGT 78541 |||| ||| || || || |||||||| | ||| ||||| || | |||||| | Sbjct 17879 ACCCCA------AATACCCACAGCAACACGCATTATCATGTGCTGGGGACGTTCAACAAT 17932 Query 78542 CTTATTATTTATTTTCAACAAGTATGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTA 78601 |||| || | ||||| | ||| || || | ||| ||||| ||||| || | ||| Sbjct 17933 CTTACCATCGAGTTTCAGTAGGTAAGAACGCTCAAGAGTCTTAAAGCCAAAGTACTGGTA 17992 Query 78602 TGAAAAGTCTCTCTCGTAAATAATAACAGAATTTAGTTTATCTTTGTATTTGGTAA--CA 78659 ||||| | ||||| | || |||| | || | ||| |||| ||| || Sbjct 17993 GTTGAAGTCACGATCGTACACGATGGCAGAGTCCAGCTCATCCTTGTGACGCATAATGCA 18052 Query 78660 AT-ATCCATGACAGTAGTTGAAATAATAGGAGATCGTACACCATTTTTAGGATTAACATA 78718 | || ||| | | | || || |||||||| | || || || |||||||| Sbjct 18053 CTCAT--ATGTCTCT-TTGGAGATCATAGGAGAGGCTTTACGGTTCGCGGGGTTAACATA 18109 Query 78719 GTTAAATAAATCTTCCATTACATCACTAA-----ATAGtttttttGTTTCCTTGTGTAGA 78773 | |||| | || |||| ||| | || | || || |||| |||||| ||| Sbjct 18110 AT--GGTAAAGGT--CA-TACACCACCGACGACCATTGCTTCTTGGTTTGCTTGTGGAGA 18164 Query 78774 TTAGATACAGCTATTCTTGCAGCTAGAATAGCATAATCAGGATGT 78818 ||||| ||||| || | || || || || |||||||| |||||| Sbjct 18165 TTAGAGACAGCAATACGGGCGGCCAGGATGGCATAATCGGGATGT 18209 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694656599879200