Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ceratocystis_20albifundus_20[genbank_20GCA_5F000813685.1_202015-01-
02] 1,405 sequences; 26,875,327 total letters
Query= NC_031033.1
Length=217124
Score E
Sequences producing significant alignments: (Bits) Value
seq539 192 8e-44
>seq539
Length=40911
Score = 192 bits (212), Expect = 8e-44
Identities = 580/885 (66%), Gaps = 32/885 (4%)
Strand=Plus/Plus
Query 77950 CCAATCCAGGGCATTCATTTGGGCACATCAATGACCAGTCACCATCTTCCTTAACTCGTT 78009
|||| || ||||||||||| |||||||| | | |||||| ||| || || ||| || |
Sbjct 17341 CCAAGCCGGGGCATTCATTGGGGCACATGAGAGTCCAGTCCTCATTTTTCTCAACACGCT 17400
Query 78010 TCATAAAGAGATCAGGTATCCATAGAGCAATAAATAGATCTCGGGTTCTATGTTCTTCAT 78069
|||| || | || ||||| || || | ||||| || || | | |||||| |
Sbjct 17401 TCATGAACAAGTCGCAGATCCACAGGGCCAAGAATAGGTCACGAGCACGGACTTCTTCCT 17460
Query 78070 TTCCTGTATTCTTTTTAAGATCGAGAAACTCCATAATATCAGAATGCCATGGTTCTAGAT 78129
|||| ||||| | ||||| ||||| | | ||||| ||||||||| || || |
Sbjct 17461 TTCCGTGGTTCTTGCGCAAGTCGAGGAACTCGAAGACATCAGCATGCCATGGCTCGAGGT 17520
Query 78130 ATATTGCCATAACTCCAGGTCGTTTATTACCTCCCTGATCTATATATCTGGCGGTGTTAT 78189
| || || | |||||||||| || || || ||||| || | ||| | ||| ||||| |
Sbjct 17521 AAATGGCAAAGGCTCCAGGTCGCTTGTTTCCACCCTGGTCAACATAACGGGCAGTGTTGT 17580
Query 78190 TATAAACTCTCAACATTGGAATAATACCGTTAGATGTTCCATTTGTTCCAGAAATATAAC 78249
| |||| | | ||| |||| |||||||| || || || || || |||| ||| |||
Sbjct 17581 TGAAAACACGTAGCATGGGAACGATACCGTTCGAAGTACCGTTAGTACCAGCAATGTAAG 17640
Query 78250 TTCCACTTGCGCGAATA--TTACTAATGGATATCCCTATTCCTCCTGCCATCTTAGATAT 78307
||| | || |||||| | || || | || || || || |||||||| || ||
Sbjct 17641 AGCCAGTGGCACGAATACGGTGGACATTGAGA--CCGATACCGCCAGCCATCTTGGAAAT 17698
Query 78308 TAGAGCGCAACGTTTCAATGTATCGTAGATACCCTCTATACTGTCATCCATCATGTTAAG 78367
| || ||| || | |||||||| || ||||| || |||||||| |||||| |
Sbjct 17699 CATGGCACAAGTCTTGAGGGTATCGTAAATGCCCTCGATGCTGTCATCTTTCATGTCGAC 17758
Query 78368 AAGAAAACAGCTAGACATTTGATGATGAACAGTTCCTGCATTAAATAATGTCGGAGATGC 78427
|| || || ||||| ||| || || || |||||||| | || || |||||
Sbjct 17759 TAGGAAGCACGAAGACAACTGAGCCTGGGGGGTACCAGCATTAAAGAGCGTAGGTGATGC 17818
Query 78428 ATGCGTAAACCATTTTTCAGAAAGTAGATTGTATGTTTCAATAGCTGATT---CTATGT- 78483
|| || || | || || | | ||||| ||||||| | || || |||
Sbjct 17819 GTGAGTGAAGAACTTGCTGGACATAAAGTTGTAGGTTTCAAGCACACGTTCGACTTTGTC 17878
Query 78484 --CCCATTGATGAATTCCTACCGCTACACGCATCAACATATGCTGAGGTCTTTCAACCGT 78541
|||| ||| || || || |||||||| | ||| ||||| || | |||||| |
Sbjct 17879 ACCCCA------AATACCCACAGCAACACGCATTATCATGTGCTGGGGACGTTCAACAAT 17932
Query 78542 CTTATTATTTATTTTCAACAAGTATGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTA 78601
|||| || | ||||| | ||| || || | ||| ||||| ||||| || | |||
Sbjct 17933 CTTACCATCGAGTTTCAGTAGGTAAGAACGCTCAAGAGTCTTAAAGCCAAAGTACTGGTA 17992
Query 78602 TGAAAAGTCTCTCTCGTAAATAATAACAGAATTTAGTTTATCTTTGTATTTGGTAA--CA 78659
||||| | ||||| | || |||| | || | ||| |||| ||| ||
Sbjct 17993 GTTGAAGTCACGATCGTACACGATGGCAGAGTCCAGCTCATCCTTGTGACGCATAATGCA 18052
Query 78660 AT-ATCCATGACAGTAGTTGAAATAATAGGAGATCGTACACCATTTTTAGGATTAACATA 78718
| || ||| | | | || || |||||||| | || || || ||||||||
Sbjct 18053 CTCAT--ATGTCTCT-TTGGAGATCATAGGAGAGGCTTTACGGTTCGCGGGGTTAACATA 18109
Query 78719 GTTAAATAAATCTTCCATTACATCACTAA-----ATAGtttttttGTTTCCTTGTGTAGA 78773
| |||| | || |||| ||| | || | || || |||| |||||| |||
Sbjct 18110 AT--GGTAAAGGT--CA-TACACCACCGACGACCATTGCTTCTTGGTTTGCTTGTGGAGA 18164
Query 78774 TTAGATACAGCTATTCTTGCAGCTAGAATAGCATAATCAGGATGT 78818
||||| ||||| || | || || || || |||||||| ||||||
Sbjct 18165 TTAGAGACAGCAATACGGGCGGCCAGGATGGCATAATCGGGATGT 18209
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 694656599879200
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |