Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceratocystis_20albifundus_20[genbank_20GCA_5F000813685.1_202015-01- 02] 1,405 sequences; 26,875,327 total letters Query= NC_031465.1 Length=360610 Score E Sequences producing significant alignments: (Bits) Value seq576 102 2e-16 seq492 100 7e-16 seq1207 84.2 5e-11 >seq576 Length=37320 Score = 102 bits (112), Expect = 2e-16 Identities = 152/214 (71%), Gaps = 4/214 (2%) Strand=Plus/Minus Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952 || || | |||||||||||| || || ||||||||||| || | | || | || || Sbjct 12692 AGAACCAAATGAAGAGTAGATTCCTTCTGGATGTTGTAGTCAGAGAGGGTGCGGCCGTCC 12633 Query 151953 TCTAG--GCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTT 152010 || || ||||| || || ||||| || | |||||| |||| | ||| || ||||| | Sbjct 12632 TCAAGCTGCTTT--CCAGCAAAGATGAGACGCTGCTGATCCGGAGGGATACCCTCCTTAT 12575 Query 152011 CTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAG 152070 | || || || |||||| | || | | || ||| ||| || || || ||||||| Sbjct 12574 CCTGGATCTTGGACTTGACATTGTCAATAGTATCCGAAGACTCGACCTCGAGTGTAATAG 12515 Query 152071 TTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 | |||||||| || ||||| || |||| ||||| Sbjct 12514 TCTTGCCCGTCAGGGTCTTGACAAAGATTTGCAT 12481 Score = 102 bits (112), Expect = 2e-16 Identities = 152/214 (71%), Gaps = 4/214 (2%) Strand=Plus/Minus Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952 || || | ||||||||| || || || ||||||||||| || | | || | ||||| Sbjct 12920 AGAACCAAATGAAGAGTGGATTCCTTCTGGATGTTGTAGTCAGAGAGGGTGCGACCATCC 12861 Query 151953 TCTAG--GCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTT 152010 || || ||||| || || ||||| || | ||||||||| | | ||| || ||||| | Sbjct 12860 TCGAGTTGCTTT--CCAGCAAAGATGAGACGCTGCTGGTCAGGAGGGATACCCTCCTTGT 12803 Query 152011 CTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAG 152070 | || || || |||||| | || | | || ||| ||| || || || ||||||| Sbjct 12802 CCTGGATCTTGGACTTGACATTGTCAATAGTATCCGAAGACTCGACCTCGAGTGTAATAG 12743 Query 152071 TTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 | |||||||| || ||||| || |||| ||||| Sbjct 12742 TCTTGCCCGTCAGGGTCTTGACAAAGATTTGCAT 12709 Score = 87.8 bits (96), Expect = 4e-12 Identities = 140/198 (71%), Gaps = 5/198 (3%) Strand=Plus/Minus Query 151897 CAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTA 151956 |||| ||||||||||| || || ||||||||||| |||| | || | || || || | Sbjct 12459 CAAG-TGAAGAGTAGATTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCGTCCTCAA 12401 Query 151957 G--GCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTG 152014 | ||||| ||||| || || || | |||||| |||| | ||| || ||||| || || Sbjct 12400 GCTGCTTT--CCGGCAAAAATGAGACGCTGCTGATCCGGAGGGATACCCTCCTTATCCTG 12343 Query 152015 AATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTT 152074 || || |||||| | || | | | || || ||| ||||| || || || || || Sbjct 12342 GATCTTGGACTTGACATTGTCGATGGTATCAGAGGACTCGACTTCGAGGGTGATGGTCTT 12283 Query 152075 GCCCGTGAGAGTCTTCAC 152092 ||| || || ||||| || Sbjct 12282 GCCGGTAAGGGTCTTGAC 12265 >seq492 Length=47418 Score = 100 bits (110), Expect = 7e-16 Identities = 144/203 (71%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952 |||||||| || ||||| ||||| || ||||||||||| |||| | ||| | ||||| Sbjct 44752 AGGACAAGGTGGAGAGTGGACTCCTTCTGGATGTTGTAGTCGGACAGAGTGCGGCCATCC 44693 Query 151953 TCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCT 152012 || || || || || ||||| | | ||||||||||| | || || ||||| || Sbjct 44692 TCAAGCTGCTTGCCAGCAAAGATCAAGCGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCC 44633 Query 152013 TGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTT 152072 || || || ||||| | || | |||| ||| ||| || || || ||||| || Sbjct 44632 TGGATCTTGGACTTGACGTTGTCGATCGTGTCCGAAGACTCGACCTCCAGGGTAATGGTC 44573 Query 152073 TTGCCCGTGAGAGTCTTCACGAA 152095 || ||||| || ||||| ||||| Sbjct 44572 TTACCCGTCAGGGTCTTGACGAA 44550 >seq1207 Length=77990 Score = 84.2 bits (92), Expect = 5e-11 Identities = 133/191 (70%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 151917 TTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTAGGCTTTTCCCGGCGAAGATA 151976 || || |||||||| || | | || | ||||| || || || || |||||||| Sbjct 69257 TTCTGAATGTTGTAGTCAGACAGGGTGCGGCCATCCTCCAGCTGCTTGCCAGCGAAGATC 69198 Query 151977 AGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAATTTTTTGTTTGACAGTCTCT 152036 || | ||||||||||| | || || ||||| || ||||| || |||||| | || Sbjct 69197 AGGCGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCCTGAATCTTAGACTTGACATTGTCG 69138 Query 152037 ACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGCCCGTGAGAGTCTTCACGAAG 152096 | |||| || ||| || || || ||||| || || ||||| || ||||| ||||| Sbjct 69137 ATAGTGTCCGAGGACTCAACCTCGAGGGTAATCGTCTTACCCGTAAGGGTCTTGACGAAA 69078 Query 152097 ACCTGCATTTT 152107 | |||||| || Sbjct 69077 ATCTGCATCTT 69067 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1153800029422755