Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ceratocystis_20albifundus_20[genbank_20GCA_5F000813685.1_202015-01-
02] 1,405 sequences; 26,875,327 total letters
Query= NC_031465.1
Length=360610
Score E
Sequences producing significant alignments: (Bits) Value
seq576 102 2e-16
seq492 100 7e-16
seq1207 84.2 5e-11
>seq576
Length=37320
Score = 102 bits (112), Expect = 2e-16
Identities = 152/214 (71%), Gaps = 4/214 (2%)
Strand=Plus/Minus
Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952
|| || | |||||||||||| || || ||||||||||| || | | || | || ||
Sbjct 12692 AGAACCAAATGAAGAGTAGATTCCTTCTGGATGTTGTAGTCAGAGAGGGTGCGGCCGTCC 12633
Query 151953 TCTAG--GCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTT 152010
|| || ||||| || || ||||| || | |||||| |||| | ||| || ||||| |
Sbjct 12632 TCAAGCTGCTTT--CCAGCAAAGATGAGACGCTGCTGATCCGGAGGGATACCCTCCTTAT 12575
Query 152011 CTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAG 152070
| || || || |||||| | || | | || ||| ||| || || || |||||||
Sbjct 12574 CCTGGATCTTGGACTTGACATTGTCAATAGTATCCGAAGACTCGACCTCGAGTGTAATAG 12515
Query 152071 TTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104
| |||||||| || ||||| || |||| |||||
Sbjct 12514 TCTTGCCCGTCAGGGTCTTGACAAAGATTTGCAT 12481
Score = 102 bits (112), Expect = 2e-16
Identities = 152/214 (71%), Gaps = 4/214 (2%)
Strand=Plus/Minus
Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952
|| || | ||||||||| || || || ||||||||||| || | | || | |||||
Sbjct 12920 AGAACCAAATGAAGAGTGGATTCCTTCTGGATGTTGTAGTCAGAGAGGGTGCGACCATCC 12861
Query 151953 TCTAG--GCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTT 152010
|| || ||||| || || ||||| || | ||||||||| | | ||| || ||||| |
Sbjct 12860 TCGAGTTGCTTT--CCAGCAAAGATGAGACGCTGCTGGTCAGGAGGGATACCCTCCTTGT 12803
Query 152011 CTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAG 152070
| || || || |||||| | || | | || ||| ||| || || || |||||||
Sbjct 12802 CCTGGATCTTGGACTTGACATTGTCAATAGTATCCGAAGACTCGACCTCGAGTGTAATAG 12743
Query 152071 TTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104
| |||||||| || ||||| || |||| |||||
Sbjct 12742 TCTTGCCCGTCAGGGTCTTGACAAAGATTTGCAT 12709
Score = 87.8 bits (96), Expect = 4e-12
Identities = 140/198 (71%), Gaps = 5/198 (3%)
Strand=Plus/Minus
Query 151897 CAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTA 151956
|||| ||||||||||| || || ||||||||||| |||| | || | || || || |
Sbjct 12459 CAAG-TGAAGAGTAGATTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCGTCCTCAA 12401
Query 151957 G--GCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTG 152014
| ||||| ||||| || || || | |||||| |||| | ||| || ||||| || ||
Sbjct 12400 GCTGCTTT--CCGGCAAAAATGAGACGCTGCTGATCCGGAGGGATACCCTCCTTATCCTG 12343
Query 152015 AATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTT 152074
|| || |||||| | || | | | || || ||| ||||| || || || || ||
Sbjct 12342 GATCTTGGACTTGACATTGTCGATGGTATCAGAGGACTCGACTTCGAGGGTGATGGTCTT 12283
Query 152075 GCCCGTGAGAGTCTTCAC 152092
||| || || ||||| ||
Sbjct 12282 GCCGGTAAGGGTCTTGAC 12265
>seq492
Length=47418
Score = 100 bits (110), Expect = 7e-16
Identities = 144/203 (71%), Gaps = 0/203 (0%)
Strand=Plus/Minus
Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952
|||||||| || ||||| ||||| || ||||||||||| |||| | ||| | |||||
Sbjct 44752 AGGACAAGGTGGAGAGTGGACTCCTTCTGGATGTTGTAGTCGGACAGAGTGCGGCCATCC 44693
Query 151953 TCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCT 152012
|| || || || || ||||| | | ||||||||||| | || || ||||| ||
Sbjct 44692 TCAAGCTGCTTGCCAGCAAAGATCAAGCGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCC 44633
Query 152013 TGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTT 152072
|| || || ||||| | || | |||| ||| ||| || || || ||||| ||
Sbjct 44632 TGGATCTTGGACTTGACGTTGTCGATCGTGTCCGAAGACTCGACCTCCAGGGTAATGGTC 44573
Query 152073 TTGCCCGTGAGAGTCTTCACGAA 152095
|| ||||| || ||||| |||||
Sbjct 44572 TTACCCGTCAGGGTCTTGACGAA 44550
>seq1207
Length=77990
Score = 84.2 bits (92), Expect = 5e-11
Identities = 133/191 (70%), Gaps = 0/191 (0%)
Strand=Plus/Minus
Query 151917 TTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTAGGCTTTTCCCGGCGAAGATA 151976
|| || |||||||| || | | || | ||||| || || || || ||||||||
Sbjct 69257 TTCTGAATGTTGTAGTCAGACAGGGTGCGGCCATCCTCCAGCTGCTTGCCAGCGAAGATC 69198
Query 151977 AGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAATTTTTTGTTTGACAGTCTCT 152036
|| | ||||||||||| | || || ||||| || ||||| || |||||| | ||
Sbjct 69197 AGGCGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCCTGAATCTTAGACTTGACATTGTCG 69138
Query 152037 ACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGCCCGTGAGAGTCTTCACGAAG 152096
| |||| || ||| || || || ||||| || || ||||| || ||||| |||||
Sbjct 69137 ATAGTGTCCGAGGACTCAACCTCGAGGGTAATCGTCTTACCCGTAAGGGTCTTGACGAAA 69078
Query 152097 ACCTGCATTTT 152107
| |||||| ||
Sbjct 69077 ATCTGCATCTT 69067
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1153800029422755
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |