Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ceratocystis_20albifundus_20[genbank_20GCA_5F000813685.1_202015-01-
02] 1,405 sequences; 26,875,327 total letters
Query= NC_032255.1
Length=112536
Score E
Sequences producing significant alignments: (Bits) Value
seq576 132 3e-26
seq492 120 2e-22
seq1207 107 1e-18
>seq576
Length=37320
Score = 132 bits (146), Expect = 3e-26
Identities = 172/236 (73%), Gaps = 4/236 (2%)
Strand=Plus/Minus
Query 44104 TTTCATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTA 44163
|| ||| || || | ||| | || |||| ||||| || ||||| |||||||||||
Sbjct 12714 TTGCATACCACCACGCAGACGCAGAACCAAATGAAGAGTAGATTCCTTCTGGATGTTGTA 12655
Query 44164 ATCGGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATC 44223
|| | ||| ||| |||| || |||||||| || |||||||| | ||||||||||||
Sbjct 12654 GTCAGAGAGGGTGCGGCCGTCCTCAAGCTGCTTTCCAGCAAAGATGAGACGCTGCTGATC 12595
Query 44224 TGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTT--CAATGTTCCTATGGTGTCGGCG 44281
| ||| | ||| ||||| ||| ||||| ||| || ||| | || || || |
Sbjct 12594 CGGAGGGATACCCTCCTTATCCTGGATCTTGGACTTGACATTGT--CAATAGTATCCGAA 12537
Query 44282 GATTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337
|| || ||||| | ||||| ||||| ||||| |||||||| || |||||||||||
Sbjct 12536 GACTCGACCTCGAGTGTAATAGTCTTGCCCGTCAGGGTCTTGACAAAGATTTGCAT 12481
Score = 120 bits (132), Expect = 2e-22
Identities = 165/229 (72%), Gaps = 4/229 (2%)
Strand=Plus/Minus
Query 44111 CCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCG 44170
|| || | ||| | || |||| ||||| ||| ||||| ||||||||||| || | |
Sbjct 12935 CCACCACGCAGACGCAGAACCAAATGAAGAGTGGATTCCTTCTGGATGTTGTAGTCAGAG 12876
Query 44171 AGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGC 44230
|| ||| | || || || ||||| || |||||||| | ||||||||| || | |||
Sbjct 12875 AGGGTGCGACCATCCTCGAGTTGCTTTCCAGCAAAGATGAGACGCTGCTGGTCAGGAGGG 12816
Query 44231 ACACCTTCCTTTTCCGTTATCTTCTGCTT--CAATGTTCCTATGGTGTCGGCGGATTCCA 44288
| ||| ||||| ||| ||||| ||| || ||| | || || || | || || |
Sbjct 12815 ATACCCTCCTTGTCCTGGATCTTGGACTTGACATTGT--CAATAGTATCCGAAGACTCGA 12758
Query 44289 CCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337
|||| | ||||| ||||| ||||| |||||||| || |||||||||||
Sbjct 12757 CCTCGAGTGTAATAGTCTTGCCCGTCAGGGTCTTGACAAAGATTTGCAT 12709
Score = 114 bits (126), Expect = 9e-21
Identities = 161/224 (72%), Gaps = 4/224 (2%)
Strand=Plus/Minus
Query 44104 TTTCATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTA 44163
|| ||| || || | ||| | || |||| |||||| || ||||| |||||||||||
Sbjct 12486 TTGCATACCACCACGCAGACGCAGAACCAAGTGAAGAGTAGATTCCTTCTGGATGTTGTA 12427
Query 44164 ATCGGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATC 44223
|||| || ||| |||| || |||||||| |||||||| || | ||||||||||||
Sbjct 12426 GTCGGACAGGGTGCGGCCGTCCTCAAGCTGCTTTCCGGCAAAAATGAGACGCTGCTGATC 12367
Query 44224 TGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTT--CAATGTTCCTATGGTGTCGGCG 44281
| ||| | ||| ||||| ||| ||||| ||| || ||| | ||||| || | |
Sbjct 12366 CGGAGGGATACCCTCCTTATCCTGGATCTTGGACTTGACATTGT--CGATGGTATCAGAG 12309
Query 44282 GATTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCAC 44325
|| || || || | || || ||||| || || |||||||| ||
Sbjct 12308 GACTCGACTTCGAGGGTGATGGTCTTGCCGGTAAGGGTCTTGAC 12265
Score = 86.0 bits (94), Expect = 5e-12
Identities = 147/211 (70%), Gaps = 2/211 (1%)
Strand=Plus/Minus
Query 44104 TTTCATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTA 44163
|| ||| || || | ||| | | ||| || || || || |||||| |||||||||||
Sbjct 12202 TTGCATACCACCACGCAGGCGGAGCACTAGATGGAGAGTAGACTCCTTCTGGATGTTGTA 12143
Query 44164 ATCGGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATC 44223
|||| || ||| | || || |||||||| ||||| || || | ||||||||| ||
Sbjct 12142 GTCGGACAGGGTGCGGCCATCCTCAAGCTGCTTTCCGGCGAAAATGAGACGCTGCTGGTC 12083
Query 44224 TGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTT-CCTATGGTGTCGGCGG 44282
| ||| | ||| ||||| ||| ||||| ||| || ||| | || || || | |
Sbjct 12082 CGGAGGAATACCCTCCTTGTCCTGGATCTTAGACTT-AACGTTGTCAATAGTATCCGAAG 12024
Query 44283 ATTCCACCTCCACCGTAATCGTCTTTCCCGT 44313
| |||||||| | || || ||||| || ||
Sbjct 12023 ACTCCACCTCGAGGGTGATGGTCTTGCCGGT 11993
>seq492
Length=47418
Score = 120 bits (132), Expect = 2e-22
Identities = 159/221 (72%), Gaps = 0/221 (0%)
Strand=Plus/Minus
Query 44108 ATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCG 44167
|| || || | ||| | || || ||||| || ||| |||||| ||||||||||| |||
Sbjct 44770 ATACCACCACGCAGGCGCAGGACAAGGTGGAGAGTGGACTCCTTCTGGATGTTGTAGTCG 44711
Query 44168 GCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAA 44227
| || ||| | || || |||||||| || ||||||||||| |||||||| || |
Sbjct 44710 GACAGAGTGCGGCCATCCTCAAGCTGCTTGCCAGCAAAGATCAAGCGCTGCTGGTCCGGG 44651
Query 44228 GGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCC 44287
|| | || ||||| ||| ||||| ||| | | | || ||||| | || ||
Sbjct 44650 GGAATGCCCTCCTTGTCCTGGATCTTGGACTTGACGTTGTCGATCGTGTCCGAAGACTCG 44591
Query 44288 ACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAA 44328
||||||| ||||| ||||| ||||| |||||||| |||||
Sbjct 44590 ACCTCCAGGGTAATGGTCTTACCCGTCAGGGTCTTGACGAA 44550
>seq1207
Length=77990
Score = 107 bits (118), Expect = 1e-18
Identities = 140/192 (73%), Gaps = 4/192 (2%)
Strand=Plus/Minus
Query 44148 CCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGA 44207
|||| || |||||||| || | || ||| | || ||||||||||| || || ||||
Sbjct 69259 CCTTCTGAATGTTGTAGTCAGACAGGGTGCGGCCATCCTCCAGCTGCTTGCCAGCGAAGA 69200
Query 44208 TCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTT--CAATGT 44265
||| |||||||| || | || | || ||||| ||| ||||| ||| || |||
Sbjct 69199 TCAGGCGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCCTGAATCTTAGACTTGACATTGT 69140
Query 44266 TCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCAC 44325
| || ||||| | ||| || ||||| | ||||||||||| ||||| |||||||| ||
Sbjct 69139 --CGATAGTGTCCGAGGACTCAACCTCGAGGGTAATCGTCTTACCCGTAAGGGTCTTGAC 69082
Query 44326 GAAGATTTGCAT 44337
||| || |||||
Sbjct 69081 GAAAATCTGCAT 69070
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 359984235726885
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |