Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceratocystis_20albifundus_20[genbank_20GCA_5F000813685.1_202015-01- 02] 1,405 sequences; 26,875,327 total letters Query= NC_032255.1 Length=112536 Score E Sequences producing significant alignments: (Bits) Value seq576 132 3e-26 seq492 120 2e-22 seq1207 107 1e-18 >seq576 Length=37320 Score = 132 bits (146), Expect = 3e-26 Identities = 172/236 (73%), Gaps = 4/236 (2%) Strand=Plus/Minus Query 44104 TTTCATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTA 44163 || ||| || || | ||| | || |||| ||||| || ||||| ||||||||||| Sbjct 12714 TTGCATACCACCACGCAGACGCAGAACCAAATGAAGAGTAGATTCCTTCTGGATGTTGTA 12655 Query 44164 ATCGGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATC 44223 || | ||| ||| |||| || |||||||| || |||||||| | |||||||||||| Sbjct 12654 GTCAGAGAGGGTGCGGCCGTCCTCAAGCTGCTTTCCAGCAAAGATGAGACGCTGCTGATC 12595 Query 44224 TGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTT--CAATGTTCCTATGGTGTCGGCG 44281 | ||| | ||| ||||| ||| ||||| ||| || ||| | || || || | Sbjct 12594 CGGAGGGATACCCTCCTTATCCTGGATCTTGGACTTGACATTGT--CAATAGTATCCGAA 12537 Query 44282 GATTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 || || ||||| | ||||| ||||| ||||| |||||||| || ||||||||||| Sbjct 12536 GACTCGACCTCGAGTGTAATAGTCTTGCCCGTCAGGGTCTTGACAAAGATTTGCAT 12481 Score = 120 bits (132), Expect = 2e-22 Identities = 165/229 (72%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 44111 CCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCG 44170 || || | ||| | || |||| ||||| ||| ||||| ||||||||||| || | | Sbjct 12935 CCACCACGCAGACGCAGAACCAAATGAAGAGTGGATTCCTTCTGGATGTTGTAGTCAGAG 12876 Query 44171 AGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGC 44230 || ||| | || || || ||||| || |||||||| | ||||||||| || | ||| Sbjct 12875 AGGGTGCGACCATCCTCGAGTTGCTTTCCAGCAAAGATGAGACGCTGCTGGTCAGGAGGG 12816 Query 44231 ACACCTTCCTTTTCCGTTATCTTCTGCTT--CAATGTTCCTATGGTGTCGGCGGATTCCA 44288 | ||| ||||| ||| ||||| ||| || ||| | || || || | || || | Sbjct 12815 ATACCCTCCTTGTCCTGGATCTTGGACTTGACATTGT--CAATAGTATCCGAAGACTCGA 12758 Query 44289 CCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 |||| | ||||| ||||| ||||| |||||||| || ||||||||||| Sbjct 12757 CCTCGAGTGTAATAGTCTTGCCCGTCAGGGTCTTGACAAAGATTTGCAT 12709 Score = 114 bits (126), Expect = 9e-21 Identities = 161/224 (72%), Gaps = 4/224 (2%) Strand=Plus/Minus Query 44104 TTTCATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTA 44163 || ||| || || | ||| | || |||| |||||| || ||||| ||||||||||| Sbjct 12486 TTGCATACCACCACGCAGACGCAGAACCAAGTGAAGAGTAGATTCCTTCTGGATGTTGTA 12427 Query 44164 ATCGGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATC 44223 |||| || ||| |||| || |||||||| |||||||| || | |||||||||||| Sbjct 12426 GTCGGACAGGGTGCGGCCGTCCTCAAGCTGCTTTCCGGCAAAAATGAGACGCTGCTGATC 12367 Query 44224 TGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTT--CAATGTTCCTATGGTGTCGGCG 44281 | ||| | ||| ||||| ||| ||||| ||| || ||| | ||||| || | | Sbjct 12366 CGGAGGGATACCCTCCTTATCCTGGATCTTGGACTTGACATTGT--CGATGGTATCAGAG 12309 Query 44282 GATTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCAC 44325 || || || || | || || ||||| || || |||||||| || Sbjct 12308 GACTCGACTTCGAGGGTGATGGTCTTGCCGGTAAGGGTCTTGAC 12265 Score = 86.0 bits (94), Expect = 5e-12 Identities = 147/211 (70%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 44104 TTTCATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTA 44163 || ||| || || | ||| | | ||| || || || || |||||| ||||||||||| Sbjct 12202 TTGCATACCACCACGCAGGCGGAGCACTAGATGGAGAGTAGACTCCTTCTGGATGTTGTA 12143 Query 44164 ATCGGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATC 44223 |||| || ||| | || || |||||||| ||||| || || | ||||||||| || Sbjct 12142 GTCGGACAGGGTGCGGCCATCCTCAAGCTGCTTTCCGGCGAAAATGAGACGCTGCTGGTC 12083 Query 44224 TGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTT-CCTATGGTGTCGGCGG 44282 | ||| | ||| ||||| ||| ||||| ||| || ||| | || || || | | Sbjct 12082 CGGAGGAATACCCTCCTTGTCCTGGATCTTAGACTT-AACGTTGTCAATAGTATCCGAAG 12024 Query 44283 ATTCCACCTCCACCGTAATCGTCTTTCCCGT 44313 | |||||||| | || || ||||| || || Sbjct 12023 ACTCCACCTCGAGGGTGATGGTCTTGCCGGT 11993 >seq492 Length=47418 Score = 120 bits (132), Expect = 2e-22 Identities = 159/221 (72%), Gaps = 0/221 (0%) Strand=Plus/Minus Query 44108 ATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCG 44167 || || || | ||| | || || ||||| || ||| |||||| ||||||||||| ||| Sbjct 44770 ATACCACCACGCAGGCGCAGGACAAGGTGGAGAGTGGACTCCTTCTGGATGTTGTAGTCG 44711 Query 44168 GCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAA 44227 | || ||| | || || |||||||| || ||||||||||| |||||||| || | Sbjct 44710 GACAGAGTGCGGCCATCCTCAAGCTGCTTGCCAGCAAAGATCAAGCGCTGCTGGTCCGGG 44651 Query 44228 GGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCC 44287 || | || ||||| ||| ||||| ||| | | | || ||||| | || || Sbjct 44650 GGAATGCCCTCCTTGTCCTGGATCTTGGACTTGACGTTGTCGATCGTGTCCGAAGACTCG 44591 Query 44288 ACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAA 44328 ||||||| ||||| ||||| ||||| |||||||| ||||| Sbjct 44590 ACCTCCAGGGTAATGGTCTTACCCGTCAGGGTCTTGACGAA 44550 >seq1207 Length=77990 Score = 107 bits (118), Expect = 1e-18 Identities = 140/192 (73%), Gaps = 4/192 (2%) Strand=Plus/Minus Query 44148 CCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGA 44207 |||| || |||||||| || | || ||| | || ||||||||||| || || |||| Sbjct 69259 CCTTCTGAATGTTGTAGTCAGACAGGGTGCGGCCATCCTCCAGCTGCTTGCCAGCGAAGA 69200 Query 44208 TCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTT--CAATGT 44265 ||| |||||||| || | || | || ||||| ||| ||||| ||| || ||| Sbjct 69199 TCAGGCGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCCTGAATCTTAGACTTGACATTGT 69140 Query 44266 TCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCAC 44325 | || ||||| | ||| || ||||| | ||||||||||| ||||| |||||||| || Sbjct 69139 --CGATAGTGTCCGAGGACTCAACCTCGAGGGTAATCGTCTTACCCGTAAGGGTCTTGAC 69082 Query 44326 GAAGATTTGCAT 44337 ||| || ||||| Sbjct 69081 GAAAATCTGCAT 69070 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 359984235726885