Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceratocystis_20albifundus_20[genbank_20GCA_5F000813685.1_202015-01- 02] 1,405 sequences; 26,875,327 total letters Query= NC_033775.1 Length=376207 Score E Sequences producing significant alignments: (Bits) Value seq1207 127 5e-24 seq576 127 5e-24 seq492 123 6e-23 >seq1207 Length=77990 Score = 127 bits (140), Expect = 5e-24 Identities = 130/169 (77%), Gaps = 3/169 (2%) Strand=Plus/Plus Query 177910 AGGTTAAAATGCTCCAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGG 177969 |||| || |||| | |||||||| || || || || || || ||||| |||||||||| Sbjct 69062 AGGTCAAGATGC---AGATTTTCGTCAAGACCCTTACGGGTAAGACGATTACCCTCGAGG 69118 Query 177970 TGGAAAGCTCAGACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCC 178029 | || ||| ||||| ||||| || ||||| |||||||||||||| || || || | Sbjct 69119 TTGAGTCCTCGGACACTATCGACAATGTCAAGTCTAAGATTCAGGACAAGGAGGGCATTC 69178 Query 178030 CTCCGGACCAGCAACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGG 178078 | ||||||||||| || || |||||||| || || ||||| || ||||| Sbjct 69179 CCCCGGACCAGCAGCGCCTGATCTTCGCTGGCAAGCAGCTGGAGGATGG 69227 >seq576 Length=37320 Score = 127 bits (140), Expect = 5e-24 Identities = 139/185 (75%), Gaps = 0/185 (0%) Strand=Plus/Plus Query 177945 ACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGACACCATCGAGAACGTCAAACAA 178004 || || || || ||||||||||||||||| || || || || || ||||| || Sbjct 11993 ACCGGCAAGACCATCACCCTCGAGGTGGAGTCTTCGGATACTATTGACAACGTTAAGTCT 12052 Query 178005 AAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTTATCTTCGCCGGAAAA 178064 ||||| |||||||| || || || |||||||||||||| || || || ||||||||||| Sbjct 12053 AAGATCCAGGACAAGGAGGGTATTCCTCCGGACCAGCAGCGTCTCATTTTCGCCGGAAAG 12112 Query 178065 CAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAAAAAGAATCAACACTGCAT 178124 ||||| || ||||| | || || |||| || ||| |||| || || || || || ||| Sbjct 12113 CAGCTTGAGGATGGCCGCACCCTGTCCGACTACAACATCCAGAAGGAGTCTACTCTCCAT 12172 Query 178125 CTTGT 178129 || || Sbjct 12173 CTAGT 12177 Score = 122 bits (134), Expect = 2e-22 Identities = 147/199 (74%), Gaps = 1/199 (1%) Strand=Plus/Plus Query 177933 GTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGACACCATCGAG 177992 || || || || || || || || ||||||||||| || || ||| || |||||||| Sbjct 12265 GTCAAGACCCTTACCGGCAAGACCATCACCCTCGAAGTCGAGTCCTCTGATACCATCGAC 12324 Query 177993 AACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTTATC 178052 || ||||| ||||| ||||| || || || ||||||||||| ||||| || || || Sbjct 12325 AATGTCAAGTCCAAGATCCAGGATAAGGAGGGTATCCCTCCGGATCAGCAGCGTCTCATT 12384 Query 178053 TTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAAAAAGAA 178112 || |||||||| ||||| || || || | || || |||| || ||| |||| || ||| Sbjct 12385 TTTGCCGGAAAGCAGCTTGAGGACGGCCGCACCCTGTCCGACTACAACATCCAGAAGGAA 12444 Query 178113 TCAACACTGCATCTTGTTT 178131 || || || || |||| || Sbjct 12445 TCTACTCTTCA-CTTGGTT 12462 Score = 109 bits (120), Expect = 1e-18 Identities = 150/210 (71%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||| || || || || || || || || || || || |||||||| || || || Sbjct 12484 CAAATCTTTGTCAAGACCCTGACGGGCAAGACTATTACACTCGAGGTCGAGTCTTCGGAT 12543 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || || || || ||||| ||||| ||||| || || || ||||||||||| ||||| Sbjct 12544 ACTATTGACAATGTCAAGTCCAAGATCCAGGATAAGGAGGGTATCCCTCCGGATCAGCAG 12603 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || || ||||| || ||||| ||||| || || || | || || | || || ||| || Sbjct 12604 CGTCTCATCTTTGCTGGAAAGCAGCTTGAGGACGGCCGCACCCTCTCTGACTACAACATC 12663 Query 178104 CAAAAAGAATCAACACTGCATCTTGTTTTG 178133 || || ||||| || || ||| | ||| || Sbjct 12664 CAGAAGGAATCTACTCTTCATTTGGTTCTG 12693 >seq492 Length=47418 Score = 123 bits (136), Expect = 6e-23 Identities = 148/201 (74%), Gaps = 0/201 (0%) Strand=Plus/Plus Query 177929 TTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGACACCAT 177988 |||||| || || || || || || || || ||||| ||||| || || ||||| || Sbjct 44549 TTTCGTCAAGACCCTGACGGGTAAGACCATTACCCTGGAGGTCGAGTCTTCGGACACGAT 44608 Query 177989 CGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACT 178048 ||| |||||||| ||||| |||||||| || || || || ||||||||||| || | Sbjct 44609 CGACAACGTCAAGTCCAAGATCCAGGACAAGGAGGGCATTCCCCCGGACCAGCAGCGCTT 44668 Query 178049 TATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAAAA 178108 ||||| || || || ||||| || ||||| | ||||| |||| || ||| |||| || Sbjct 44669 GATCTTTGCTGGCAAGCAGCTTGAGGATGGCCGCACTCTGTCCGACTACAACATCCAGAA 44728 Query 178109 AGAATCAACACTGCATCTTGT 178129 || || || || || ||||| Sbjct 44729 GGAGTCCACTCTCCACCTTGT 44749 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1203709530957570