Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ceratocystis_20albifundus_20[genbank_20GCA_5F000813685.1_202015-01-
02] 1,405 sequences; 26,875,327 total letters
Query= NC_033775.1
Length=376207
Score E
Sequences producing significant alignments: (Bits) Value
seq1207 127 5e-24
seq576 127 5e-24
seq492 123 6e-23
>seq1207
Length=77990
Score = 127 bits (140), Expect = 5e-24
Identities = 130/169 (77%), Gaps = 3/169 (2%)
Strand=Plus/Plus
Query 177910 AGGTTAAAATGCTCCAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGG 177969
|||| || |||| | |||||||| || || || || || || ||||| ||||||||||
Sbjct 69062 AGGTCAAGATGC---AGATTTTCGTCAAGACCCTTACGGGTAAGACGATTACCCTCGAGG 69118
Query 177970 TGGAAAGCTCAGACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCC 178029
| || ||| ||||| ||||| || ||||| |||||||||||||| || || || |
Sbjct 69119 TTGAGTCCTCGGACACTATCGACAATGTCAAGTCTAAGATTCAGGACAAGGAGGGCATTC 69178
Query 178030 CTCCGGACCAGCAACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGG 178078
| ||||||||||| || || |||||||| || || ||||| || |||||
Sbjct 69179 CCCCGGACCAGCAGCGCCTGATCTTCGCTGGCAAGCAGCTGGAGGATGG 69227
>seq576
Length=37320
Score = 127 bits (140), Expect = 5e-24
Identities = 139/185 (75%), Gaps = 0/185 (0%)
Strand=Plus/Plus
Query 177945 ACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGACACCATCGAGAACGTCAAACAA 178004
|| || || || ||||||||||||||||| || || || || || ||||| ||
Sbjct 11993 ACCGGCAAGACCATCACCCTCGAGGTGGAGTCTTCGGATACTATTGACAACGTTAAGTCT 12052
Query 178005 AAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTTATCTTCGCCGGAAAA 178064
||||| |||||||| || || || |||||||||||||| || || || |||||||||||
Sbjct 12053 AAGATCCAGGACAAGGAGGGTATTCCTCCGGACCAGCAGCGTCTCATTTTCGCCGGAAAG 12112
Query 178065 CAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAAAAAGAATCAACACTGCAT 178124
||||| || ||||| | || || |||| || ||| |||| || || || || || |||
Sbjct 12113 CAGCTTGAGGATGGCCGCACCCTGTCCGACTACAACATCCAGAAGGAGTCTACTCTCCAT 12172
Query 178125 CTTGT 178129
|| ||
Sbjct 12173 CTAGT 12177
Score = 122 bits (134), Expect = 2e-22
Identities = 147/199 (74%), Gaps = 1/199 (1%)
Strand=Plus/Plus
Query 177933 GTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGACACCATCGAG 177992
|| || || || || || || || ||||||||||| || || ||| || ||||||||
Sbjct 12265 GTCAAGACCCTTACCGGCAAGACCATCACCCTCGAAGTCGAGTCCTCTGATACCATCGAC 12324
Query 177993 AACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTTATC 178052
|| ||||| ||||| ||||| || || || ||||||||||| ||||| || || ||
Sbjct 12325 AATGTCAAGTCCAAGATCCAGGATAAGGAGGGTATCCCTCCGGATCAGCAGCGTCTCATT 12384
Query 178053 TTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAAAAAGAA 178112
|| |||||||| ||||| || || || | || || |||| || ||| |||| || |||
Sbjct 12385 TTTGCCGGAAAGCAGCTTGAGGACGGCCGCACCCTGTCCGACTACAACATCCAGAAGGAA 12444
Query 178113 TCAACACTGCATCTTGTTT 178131
|| || || || |||| ||
Sbjct 12445 TCTACTCTTCA-CTTGGTT 12462
Score = 109 bits (120), Expect = 1e-18
Identities = 150/210 (71%), Gaps = 0/210 (0%)
Strand=Plus/Plus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983
||||| || || || || || || || || || || || |||||||| || || ||
Sbjct 12484 CAAATCTTTGTCAAGACCCTGACGGGCAAGACTATTACACTCGAGGTCGAGTCTTCGGAT 12543
Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043
|| || || || ||||| ||||| ||||| || || || ||||||||||| |||||
Sbjct 12544 ACTATTGACAATGTCAAGTCCAAGATCCAGGATAAGGAGGGTATCCCTCCGGATCAGCAG 12603
Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103
|| || ||||| || ||||| ||||| || || || | || || | || || ||| ||
Sbjct 12604 CGTCTCATCTTTGCTGGAAAGCAGCTTGAGGACGGCCGCACCCTCTCTGACTACAACATC 12663
Query 178104 CAAAAAGAATCAACACTGCATCTTGTTTTG 178133
|| || ||||| || || ||| | ||| ||
Sbjct 12664 CAGAAGGAATCTACTCTTCATTTGGTTCTG 12693
>seq492
Length=47418
Score = 123 bits (136), Expect = 6e-23
Identities = 148/201 (74%), Gaps = 0/201 (0%)
Strand=Plus/Plus
Query 177929 TTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGACACCAT 177988
|||||| || || || || || || || || ||||| ||||| || || ||||| ||
Sbjct 44549 TTTCGTCAAGACCCTGACGGGTAAGACCATTACCCTGGAGGTCGAGTCTTCGGACACGAT 44608
Query 177989 CGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACT 178048
||| |||||||| ||||| |||||||| || || || || ||||||||||| || |
Sbjct 44609 CGACAACGTCAAGTCCAAGATCCAGGACAAGGAGGGCATTCCCCCGGACCAGCAGCGCTT 44668
Query 178049 TATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAAAA 178108
||||| || || || ||||| || ||||| | ||||| |||| || ||| |||| ||
Sbjct 44669 GATCTTTGCTGGCAAGCAGCTTGAGGATGGCCGCACTCTGTCCGACTACAACATCCAGAA 44728
Query 178109 AGAATCAACACTGCATCTTGT 178129
|| || || || || |||||
Sbjct 44729 GGAGTCCACTCTCCACCTTGT 44749
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1203709530957570
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |