Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceratocystis_20eucalypticola_20[genbank_20GCA_5F001513815.1_202016- 01-13] 959 sequences; 30,717,923 total letters Query= NC_000852.5 Length=330611 Score E Sequences producing significant alignments: (Bits) Value seq209 138 2e-27 seq382 93.3 9e-14 >seq209 Length=70751 Score = 138 bits (152), Expect = 2e-27 Identities = 180/249 (72%), Gaps = 0/249 (0%) Strand=Plus/Minus Query 230386 ATCATTACAGAAGCAGTTGAAAACGAAAAGGAGTTCATTTGTGACGCTATTCCATGTCGC 230445 ||||| || || || || | | ||| ||||||||| | || ||| | || || | Sbjct 41363 ATCATCACTGATGCCGTCGTGATCGAGAAGGAGTTCCTGACCGAGGCTCTGCCCTGCGGT 41304 Query 230446 CTTATTGGCATGAACGCTGAACTTATGGGACAGTACATCGAATTCGTAGCCGACCGCATT 230505 || | || ||||||||||| || ||| |||||||| || || || || |||||| | Sbjct 41303 CTGCTAGGAATGAACGCTGATCTGATGAAGCAGTACATTGAGTTTGTTGCTGACCGCCTG 41244 Query 230506 TTTGTTGCACTTGGTTACGAGAAAGTGTACAACTCTAAGAACCCCTTTGCATTTATGGAG 230565 ||||||| || || ||||||| |||||| | | |||||||| | || |||||| Sbjct 41243 CTTGTTGCTCTAGGCAACGAGAAGGTGTACCGTGCCACAAACCCCTTCGACTTCATGGAG 41184 Query 230566 CTCATTTCGCTTCAAGGGAAGACCAACTTCTTCGAAAAGCGTGTCAGTGACTATCAGAGG 230625 ||| ||||| || ||||| ||||||||||| ||||||||| | ||||| |||| | Sbjct 41183 AACATCTCGCTCGGCGGCAAGACTAACTTCTTCGAGAAGCGTGTCGGCGACTACCAGAAG 41124 Query 230626 CCTGGTGTG 230634 |||||||| Sbjct 41123 GCTGGTGTG 41115 >seq382 Length=283822 Score = 93.3 bits (102), Expect = 9e-14 Identities = 245/362 (68%), Gaps = 24/362 (7%) Strand=Plus/Plus Query 319317 ACCCTCGAGGAACCCGGGCTCGGGGAACTTCCACGTGGTCTTCGTCTCGGTAAGGGCGTA 319376 |||||| ||||| |||||||||||||| | || | ||| | | ||| |||| Sbjct 86222 ACCCTCAAGGAAACCGGGCTCGGGGAAGGTGAACTCGATCTCGGAGGCACCAAGTTCGTA 86281 Query 319377 GTA--ACTCG-CTGATTCGGGACGCTTCTTCACGAACTCGGACAGATTTCCCTTGTACTT 319433 ||| ||| | | || ||| | |||||| || ||||||| ||| || || ||| Sbjct 86282 GTATGACTTGGCCGA---GGGGCACTTCTTGACAAACTCGGCCAGGTTACCACGGTAACG 86338 Query 319434 CTTCAGCTTTAGGTTAGGTTCGTAATGGATAATAGAGGTG-CAAACAGCGTCGAGGAACC 319492 ||| ||||| | | | ||||| |||| ||| | | || || || ||| ||||| | Sbjct 86339 CTTAAGCTTGAAGC---GCTCGTAGTGGACAAT-GTGCTGGCAGACGTTGTCAAGGAAGC 86394 Query 319493 CGGAGTCGTGTGACACAATCACGCACGAAACGTCCTTAAGG----TTGATCAGGTATTCA 319548 | |||||||| || || || | | ||| || | |||| ||| |||||| || Sbjct 86395 CAGAGTCGTGAGAGACGATAATG---GAA--GTGC--AAGGAGAGTTGCACAGGTAGTCC 86447 Query 319549 ATCAACCACCTCACGTTAGACACAGAAAGATGGTTGGTCGGCTCGTCAAGAAGCAGTAGC 319608 || |||| | ||||| |||| ||||||||||| ||||||||||||||||| | Sbjct 86448 TCCAGCCACTTGACGTTCTTCACATCCAGATGGTTGGTAGGCTCGTCAAGAAGCAGGATA 86507 Query 319609 TTTGCGTTCAGGAGCATTGCACGTGCA-AGAGCGAGTTTCATTTTCCACCCTCCGGAAAG 319667 | | | || | ||||| ||| ||||| || ||||| ||||| || || ||||| Sbjct 86508 TCAGGAGCCTCGAAAACGGCACG-GCACAGAGCCAGCTTCATCTTCCAACCACCAGAAAG 86566 Query 319668 AG 319669 || Sbjct 86567 AG 86568 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1057811002318170