Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceratocystis_20eucalypticola_20[genbank_20GCA_5F001513815.1_202016- 01-13] 959 sequences; 30,717,923 total letters Query= NC_002169.1 Length=135611 Score E Sequences producing significant alignments: (Bits) Value seq249 129 5e-25 seq753 114 1e-20 seq330 102 7e-17 >seq249 Length=99862 Score = 129 bits (142), Expect = 5e-25 Identities = 148/199 (74%), Gaps = 0/199 (0%) Strand=Plus/Plus Query 118530 ACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCG 118589 |||||||| | ||||| ||||| ||||||||||| ||| | ||||| |||||| Sbjct 88375 ACCAAGTGAAGAGTAGATTCTTTCTGAATGTTGTAGTCGGAAAGGGTGCGGCCATCCTCA 88434 Query 118590 AGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTA 118649 ||||| ||||| ||| |||||||||||||||| || ||||| |||||||||||||| Sbjct 88435 AGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAGGAATGCCCTCCTTGTCCTGG 88494 Query 118650 ATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTG 118709 || || || || | || | |||||| | | |||||| |||| ||| | || || Sbjct 88495 ATCTTGGACTTGACGTTGTCAATGGTGTCGGAGGACTCGACTTCGAGGGTAATGGTCTTT 88554 Query 118710 CCGGTCAGAGTTTTTACAA 118728 ||||| || || || |||| Sbjct 88555 CCGGTAAGGGTCTTGACAA 88573 Score = 123 bits (136), Expect = 2e-23 Identities = 136/181 (75%), Gaps = 0/181 (0%) Strand=Plus/Plus Query 118536 TGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGT 118595 |||| |||||||| || ||||||||||| ||| || ||||| |||||| ||||| Sbjct 88665 TGGAGAGTAGACTCCTTCTGAATGTTGTAGTCGGACAGGGTGCGGCCATCCTCAAGCTGC 88724 Query 118596 TTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTT 118655 ||||||||| |||||||||||||||| || ||||| || ||||||||||| || || Sbjct 88725 TTTCCAGCGAAGATGAGACGCTGCTGGTCCGGAGGGATACCCTCCTTGTCCTGGATCTTA 88784 Query 118656 TGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTC 118715 ||||| | || | || |||| | ||| ||||||| ||| | || ||||| ||| Sbjct 88785 GACTTAACGTTGTCAATAGTATCCGAGGACTCCACCTCGAGGGTGATGGTCTTGCCAGTC 88844 Query 118716 A 118716 | Sbjct 88845 A 88845 Score = 120 bits (132), Expect = 3e-22 Identities = 152/209 (73%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 118530 ACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCG 118589 |||||||| | |||||||| || || |||||||| ||| | ||||| |||||| Sbjct 88147 ACCAAGTGAAGAGTAGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCATCCTCA 88206 Query 118590 AGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTA 118649 ||||| ||||||||| |||||||||||||||| || ||||| || |||||||| || Sbjct 88207 AGCTGCTTTCCAGCGAAGATGAGACGCTGCTGGTCCGGAGGGATACCCTCCTTATCCTGG 88266 Query 118650 ATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTG 118709 || || || || | || | ||| || | | |||||| |||| ||| | || ||| Sbjct 88267 ATCTTGGACTTGACATTGTCAATGGTATCAGAGGACTCGACTTCGAGGGTAATGGTCTTG 88326 Query 118710 CCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 || |||| || || || || || ||||| Sbjct 88327 CCCGTCAAGGTCTTGACGAAGATTTGCAT 88355 >seq753 Length=27693 Score = 114 bits (126), Expect = 1e-20 Identities = 138/188 (73%), Gaps = 0/188 (0%) Strand=Plus/Plus Query 118551 TTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATG 118610 || ||||||||||| || || || || |||||| ||||| || |||||| |||| Sbjct 10743 TTCTGAATGTTGTAGTCAGACAGGGTACGGCCATCCTCCAGCTGCTTGCCAGCGAAGATC 10802 Query 118611 AGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCG 118670 || |||||||| || || || |||||||||||||| ||| || || || | ||| Sbjct 10803 AGGCGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCCTGAATCTTGGACTTGACATTGTCG 10862 Query 118671 ACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAA 118730 | ||||||| | ||| ||||||| ||| | ||| || || || || || || || ||| Sbjct 10863 ATAGTGTCCGAGGACTCAACCTCGAGGGTAATCGTCTTACCCGTAAGGGTCTTGACGAAA 10922 Query 118731 ATCTGCAT 118738 |||||||| Sbjct 10923 ATCTGCAT 10930 >seq330 Length=314808 Score = 102 bits (112), Expect = 7e-17 Identities = 140/196 (71%), Gaps = 0/196 (0%) Strand=Plus/Minus Query 118535 GTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTG 118594 ||||| || ||||| || || |||||||| ||| || |||||| |||||| ||||| Sbjct 237220 GTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGAGTGCGGCCATCCTCAAGCTG 237161 Query 118595 TTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTT 118654 || ||||| |||| | |||||||| || || || |||||||||||||| || || Sbjct 237160 CTTACCAGCAAAGATCAAGCGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCCTGGATCTT 237101 Query 118655 TTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGT 118714 || || | |||| ||||||| ||||||||| | ||| | || || || || Sbjct 237100 GGACTTGACGTTGTCGATCGTGTCCGAAGACTCGACCTCCAGGGTAATGGTCTTACCCGT 237041 Query 118715 CAGAGTTTTTACAAAA 118730 ||| || || || ||| Sbjct 237040 CAGGGTCTTGACGAAA 237025 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433825329471628