Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceratocystis_20eucalypticola_20[genbank_20GCA_5F001513815.1_202016- 01-13] 959 sequences; 30,717,923 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq598 257 1e-63 seq209 165 7e-36 seq753 105 6e-18 seq249 86.0 6e-12 >seq598 Length=260485 Score = 257 bits (284), Expect = 1e-63 Identities = 632/951 (66%), Gaps = 8/951 (1%) Strand=Plus/Minus Query 23027 GAGGCAAGATTGCATACGGCCACCTCGTCTTTGGACGTGTACTCTACAATTTCGGTACAT 23086 || || || ||||| || || ||||| || || |||||| | ||| || || || Sbjct 23344 GATGCTAGGTTGCACACAGCGACCTCATCAGGGGCACAGTACTCGATAATCTCAGTGCAC 23285 Query 23087 AGATTGCTACACTTTATCGTGCCCAAATTGCTCTGGTTGCTTTTTCGATTGCACGAATCC 23146 || || || || || || | ||| |||| ||||| || || ||||| || Sbjct 23284 AGGTTCGAACTGCGAATGGTACCTAGATTTTTCTGATTGCTCTTGCGGTTGCAGTGGTCT 23225 Query 23147 TTGTAGAGCATGTACGGCGTGCCCGTCTCGACCTGCGACTCGATGATCGCTCGCCACATA 23206 ||||||||||| | || |||| ||||| ||| | ||| | || || ||||| Sbjct 23224 TTGTAGAGCATAAAAGGGTTGCCAGTCTCAGTCTGAGCCTCCAGAATGGCATACCACAGT 23165 Query 23207 GTCTGAGCGTGAACA--CGT-CGCACGTACCTGCCTTCTTCCTCGTACTTTTGGTACAAC 23263 |||| || | ||| | | || || | ||| |||| |||||||||| |||| Sbjct 23164 TTCTGGGCCTTGACAACCATGCGACCGCGAC--CCTCCTTC-TCGTACTTTTCATACAGA 23108 Query 23264 GCGTCAAATTCGGCACCGTAACAGTCGGCCAGGCCGGGCGATTGCATCGGACACATGAGA 23323 || ||||| || | || || || || |||| |||||| ||| | || ||||||||| Sbjct 23107 GCCTCAAACTCTTCGCCATAGCAATCCGCCAAGCCGGGGCATTCATTGGGGCACATGAGA 23048 Query 23324 CTCCACAT-TGAGTCATTTTCAACGCGTCTCATAAAAAGATCCGGTATCCATAGAGCGTA 23382 |||| | | || || ||||| || |||| || | || ||||| || || | Sbjct 23047 GTCCAGTCCTCATTC-TTCTCAACACGCTTCATGAACAAGTCGCAGATCCACAGGGCCAA 22989 Query 23383 GAACAGTTCGCGGGCGCGCACCTCCTCTTTGCCGGTGTTCTTTTTCAAATCCAAAAAGTC 23442 ||| || || || || || || || || || ||| |||||| || || | || || Sbjct 22988 GAATAGGTCACGAGCACGGACTTCTTCCTTTCCGTGGTTCTTGCGTAAGTCGAGGAACTC 22929 Query 23443 CAACACGTCCGCATGCCACGGCTCGAGGTAAACGGCAAACGCGCCCGGTCTCTTATTGCC 23502 || || || |||||||| |||||||| |||| |||||| || || |||| ||| || || Sbjct 22928 GAAGACATCAGCATGCCATGGCTCGAGATAAATGGCAAAGGCTCCAGGTCGCTTGTTTCC 22869 Query 23503 GCCCTGATCGACGTAACGGGCCGTGTTGTTGTACACTCTTAGCATCGGCACGAGACCGTT 23562 ||||| || || |||||||| ||||||||| | || | |||||| || |||| ||||| Sbjct 22868 ACCCTGGTCAACATAACGGGCGGTGTTGTTGAAAACACGTAGCATGGGAACGATGCCGTT 22809 Query 23563 GGACGCGCCGCCTACGCCCGCCACACTCGAACCTTTTGCTCGAACGTTGTGAACGTGGAA 23622 || | ||| ||| || | || || | || |||| |||||| | || Sbjct 22808 CGAAGTACCGTTAGTGCCAGCAATGTAAGAGCCAGTGGCACGAATACGGTGAACATTGAG 22749 Query 23623 ACCTATGCCTCCGCCCGATTTCGATATCATCGCGCATTGTTTCAGAGTGTCGTAGATGCC 23682 ||| || || || || || || ||||| || || || || || ||||| ||||| Sbjct 22748 ACCGATACCACCAGCCATCTTGGAAATCATGGCACAAGTCTTGAGGGTATCGTAAATGCC 22689 Query 23683 CTCGATGCTGTCCTCTTTGGTCGCGACCAAGAAACACGAAGACATTTGCGCTTTGGGCGT 23742 |||||||||||| || || | |||| | |||||| ||||||| || || | ||| || Sbjct 22688 CTCGATGCTGTCATCCTTCATGTCGACTAGGAAACATGAAGACAACTGAGCCTGGGGAGT 22629 Query 23743 AGCGGCCGAGAACAGTGTCGGGCTGGCGTGCGTAAAGTATCCATTCGACATTAGATTGTA 23802 | |||| || || || || ||||| || ||| | | ||||| || ||||| Sbjct 22628 ACCGGCATTAAAGAGCGTAGGTGATGCGTGAGTGAAGAACTTGCTAGACATAAGGTTGTA 22569 Query 23803 CGTGTCGATGGCGGCATCAATGTCCTCTCCGTGTATACCGATGGCGACGCGCATCATCAT 23862 || || | | ||| | | || || ||||| | || || ||||| ||||| Sbjct 22568 GGTTTCAAGCACACGATCGACTTTGTCACCCCAAATACCCACAGCAACACGCATTATCAT 22509 Query 23863 GTATTGAGGTCTCTCGACCGTGACGCCGTTAATTTTGAACAGATATGAACGTTGCATCGT 23922 || || || | ||| || | || | || ||||| || || ||||| | | ||| Sbjct 22508 GTGCTGGGGACGCTCAACAATCTTACCATCAAGTTTGAGTAGGTACGAACGCTCGAGCGT 22449 Query 23923 TTTAAATCCAAAATAGTCATAGTTAAAGTCACGATCGTGCACTATGGCCGA 23973 ||||| ||||| || | ||||| |||||||| |||| ||| ||||| || Sbjct 22448 CTTAAAGCCAAAGTACTGGTAGTTGAAGTCACGGTCGTACACAATGGCAGA 22398 Score = 111 bits (122), Expect = 1e-19 Identities = 167/232 (72%), Gaps = 9/232 (4%) Strand=Plus/Minus Query 22452 GGTTCACCACTTGAAACTCGCCGGACAAGA-CGCGGCGTTGGTAAATGTTGGATGTGAAC 22510 |||| || || || |||||||| | ||||| ||||||| |||||||||||||||||| | Sbjct 23919 GGTTGACGACCTGGAACTCGCCAG-CAAGAACGCGGCGCTGGTAAATGTTGGATGTGTAG 23861 Query 22511 GGTTCGAAAGATTCATTGTTTCCCAGTATCTGAGCGGTCGAAGCGGTCGGCATCGGCGCC 22570 |||||||| | |||||||| ||||| ||||| | || || || ||||| || || Sbjct 23860 GGTTCGAAGCACTCATTGTTGCCCAGAATCTGCGACGTGCTGGCTGTAGGCATGGGTGCA 23801 Query 22571 AACAGTAGCGAGTTTCTCAAGCCGTGCT--TTGAAATTTTACTCTTGAGCATCGACCAGT 22628 | || || || || | | || |||| || | || | || | ||| | | ||||| Sbjct 23800 ACTAGAAGAGAATTGCGTACACCATGCTGCTTAATCTTCTCCTTTAGAGAA--GTCCAGT 23743 Query 22629 CCCACAGATCGGACGGCGTCACATTGTCCCACATATCGTATTGCAACACGCC 22680 ||||||| || || |||||| ||||||||||| | ||||| | ||| Sbjct 23742 CCCACAGGTCACTAGGAGTCACA---TCCCACATATCAAACTGCAAGATGCC 23694 >seq209 Length=70751 Score = 165 bits (182), Expect = 7e-36 Identities = 550/842 (65%), Gaps = 33/842 (4%) Strand=Plus/Minus Query 57570 ATTTGGAACATGTACAAAAAGGCAGAAGCATCGTTTTGGACCGTCGAAGAAGTAGACCTG 57629 || ||| | |||||||| ||||| || || || || ||||| | || || | || ||| Sbjct 41972 ATCTGGCAGATGTACAAGAAGGCCGAGGCCTCCTTCTGGACTGCTGAGGAGATTGATCTG 41913 Query 57630 TCTAAGGATCTGAGCGATTGGGATTCCC---TCAAAGAATCTGAGAGAAATTTTATTAAA 57686 ||||||||||| ||| ||| | || | || || ||| | || || Sbjct 41912 TCTAAGGATCTCCACGACTGGAACAACCGTCTGAACAAAGACGAGCAGTACTTCATCTCC 41853 Query 57687 CACGTGTTGGCGTTTTTCGCCGCATCCGATGGTATTGTTAACGAGAATTTGGTCGAAAGA 57746 ||| | | || || || || || || ||||| || || ||||| ||| | || || | Sbjct 41852 CACATTCTTGCCTTCTTTGCTGCCTCTGATGGCATCGTCAACGAAAATCTCGTTGAGCGC 41793 Query 57747 TTTTCACAAGAAGTGCAAGTGACGGAGGCGAGATGCTTTTACGGATTTCAAGTGGCCATT 57806 || ||| || ||||| | | ||||| | ||||| || || || || | || Sbjct 41792 TTCTCAGGCGAGGTGCAGATCCCCGAGGCCCGCTGCTTCTATGGTTTCCAGATCATGATG 41733 Query 57807 GAAAACGTGCATTCAGAAATGTATTCGCTACTCATCGATACGTACGTGAAGGA--CAACG 57864 |||||| | || || |||| || ||||| || || || || ||| | ||||| | || Sbjct 41732 GAAAACATCCACTCTGAAACCTACTCGCTGCTGATTGACACCTACATCAAGGAGCCCTCG 41673 Query 57865 ACGAGAAACGTAGACTGTTCAACGCGATCGAAACAATGCCCGCGATCGCCAAGAAGGCAG 57924 | | || || |||||||| || || || || || ||| ||| | ||||| | Sbjct 41672 -CAACGCACATAC-CTGTTCAATGCCATTGACACTATTCCCTGCATCCGCCGCAAGGCCG 41615 Query 57925 AGTGGTCAATCAAATGGATAAAAAGCGCCACGG---CCACGTTCGCCGAGAGGCTAATCG 57981 | ||| | | || ||||| | || || || | ||||| ||| || | ||| | | Sbjct 41614 ACTGGGCTCTGAAGTGGATCAC---CGACAAGGAGTCGACGTTTGCCCAGCGCCTAGTTG 41558 Query 57982 CGTTCGCCGCCGTCGAAGGTATATTCTTTTCGGGCAGCTTTGCGGCAATATTTTGGATGA 58041 | || || || ||||| || || || || || ||| ||| || | || || ||| || Sbjct 41557 CCTTTGCTGCTGTCGAGGGCATCTTTTTCTCAGGCGCCTTCGCCTCCATCTTCTGGCTGC 41498 Query 58042 AGAAACGCGGCCTGATGCCCGGCCTGACGTTTAGCAACGAGTTGATATCGCGCGACGAGG 58101 || || || || ||||| || ||||| || |||||| | || || || || |||| Sbjct 41497 GCAAGCGTGGTCTCATGCCTGGTCTGACCTTCTCAAACGAGCTTATTTCTCGTGATGAGG 41438 Query 58102 GTCTCCATACTGATTTTGCGTGCCTAATGTACTCTCACATTGTCAATAAACCGACGCGGG 58161 | || || || || ||||| ||||| ||| ||| || | | || || ||| | | | Sbjct 41437 GCCTGCACACCGACTTTGCTTGCCTGCTGTTCTCGCA---TCTGAACAA-CCGCCCCAGC 41382 Query 58162 ATCGCATCTTGGACA-----TTATCACCGAGGCGGTCGCGATCGAAAATGAGTTTGTCAC 58216 | | | |||| || | ||||| || || |||| |||||| || ||||| | || Sbjct 41381 AAGG-ACCTTGTGCAAAAGATCATCACTGATGCCGTCGTGATCGAGAAGGAGTTCCTGAC 41323 Query 58217 CGAAGCCCTACCG-GTGGCCATGCTCGGTATGAACAATGATTTGATGTCAAAGTACATTG 58275 ||| || || || | || | |||| || |||||| |||| ||||| ||||||||| Sbjct 41322 CGAGGCTCTGCCCTGCGGTC-TGCTAGGAATGAACGCTGATCTGATGAAGCAGTACATTG 41264 Query 58276 AGTTTGTTGCCGACAGAC----TTTTGCTCGAACTGATTGGAGAGCGTCATTACAACACG 58331 |||||||||| ||| | | | |||||| | | |||| || ||| | Sbjct 41263 AGTTTGTTGCTGACCGCCTGCTTGTTGCTCTA--GGCAACGAGAAGGT--GTACCGTGCC 41208 Query 58332 AAAAATCCGTTTGATTTTATGAATCTGATCTCGCTCGAGGGCAAGACAAACTTTTTCGAA 58391 | ||| || || || || ||| | |||||||||| |||||||| ||||| ||||| Sbjct 41207 ACAAACCCCTTCGACTTCATGGAGAACATCTCGCTCGGCGGCAAGACTAACTTCTTCGAG 41148 Query 58392 AA 58393 || Sbjct 41147 AA 41146 >seq753 Length=27693 Score = 105 bits (116), Expect = 6e-18 Identities = 118/158 (75%), Gaps = 0/158 (0%) Strand=Plus/Minus Query 31190 AACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCG 31249 || ||||| |||||||| ||||| || || || || ||||| ||| |||| ||||| | Sbjct 10933 AAGATGCAGATTTTCGTCAAGACCCTTACGGGTAAGACGATTACCCTCGAGGTTGAGTCC 10874 Query 31250 TCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGAC 31309 || |||| | |||| | ||||| | || ||||||||| ||| | || || ||| Sbjct 10873 TCGGACACTATCGACAATGTCAAGTCCAAGATTCAGGACAAGGAGGGCATTCCCCCGGAC 10814 Query 31310 CAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGA 31347 |||||||| || || ||||||||||| ||| |||| || Sbjct 10813 CAGCAGCGCCTGATCTTCGCTGGCAAGCAGCTGGAGGA 10776 >seq249 Length=99862 Score = 86.0 bits (94), Expect = 6e-12 Identities = 149/217 (69%), Gaps = 0/217 (0%) Strand=Plus/Minus Query 31205 GTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCCGACAGTGTCGAA 31264 || ||||| || || || || || || ||| |||| || || | ||||||| | || Sbjct 88571 GTCAAGACCCTTACCGGAAAGACCATTACCCTCGAAGTCGAGTCCTCCGACACCATTGAC 88512 Query 31265 ACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAGCAGCGTCTAATA 31324 | ||||| | || ||||||||| ||| | || || |||||||||||||| || Sbjct 88511 AACGTCAAGTCCAAGATCCAGGACAAGGAGGGCATTCCTCCGGACCAGCAGCGTCTCATC 88452 Query 31325 TTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAACATTCAAAAAGAA 31384 ||||| || || ||| | || || || | ||| || |||||||| |||||| Sbjct 88451 TTCGCCGGAAAGCAGCTTGAGGATGGCCGCACCCTTTCCGACTACAACATTCAGAAAGAA 88392 Query 31385 TCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGTA 31421 || |||||||| |||| || | ||| | || |||| Sbjct 88391 TCTACTCTTCACTTGGTCCTGCGTCTGCGTGGTGGTA 88355 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445761056375280