Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceratocystis_20eucalypticola_20[genbank_20GCA_5F001513815.1_202016- 01-13] 959 sequences; 30,717,923 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq209 150 2e-31 seq598 149 8e-31 >seq209 Length=70751 Score = 150 bits (166), Expect = 2e-31 Identities = 380/572 (66%), Gaps = 18/572 (3%) Strand=Plus/Plus Query 33573 AACATCAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAATTCGTTAGAA 33632 |||| || || || || ||| |||||| ||||| || | | ||| | ||||| || Sbjct 41407 AACAGCAGGCAAGCAAAGTCGGTGTGCAGGCCCTCATCACGAGAAATAAGCTCGTTTGAG 41466 Query 33633 AACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCG 33692 || || || || ||||| || |||||||| ||||| || ||||| ||||| | || Sbjct 41467 AAGGTCAGACCAGGCATGAGACCACGCTTGCGCAGCCAGAAGATGGAGGCGAAGGCGCCT 41526 Query 33693 GAAAAGAAGATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATAAC--CGGCGC 33750 || || ||||| || || || ||||||||||||| || | || || ||| || | | Sbjct 41527 GAGAAAAAGATGCCCTCGACAGCAGCAAAGGCAACTAGGCGCTGGGCA-AACGTCGACTC 41585 Query 33751 --TGTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTC 33808 |||| |||||||| ||||||| |||||||| | || || || || || Sbjct 41586 CTTGTCGGTGATCCACTTCAGAGCCCAGTCGGCCTTGCGGCGGATGCAGGGAATAGTGTC 41645 Query 33809 TATGGCATTAAAGAGATAGtttttttCATTACTA----TCTTTAACATAAGTATCGATCA 33864 |||||||| || || || | | | || | | || || | || || || |||| Sbjct 41646 AATGGCATTGAACAGGTA----TGTGCGTTGCGAGGGCTCCTTGATGTAGGTGTCAATCA 41701 Query 33865 AAAGACTATACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATC 33924 || || |||| || || |||||||| || ||||| || || ||||| || | Sbjct 41702 GCAGCGAGTAGGTTTCAGAGTGGATGTTTTCCATCATGATCTGGAAACCATAGAAGCAGC 41761 Query 33925 TAGCCTCGGTAATCTGCACTTCTGTACAAAATCGTTCTGCTAAATTTTCATTCACTATTC 33984 ||||||| |||||||| || | || || || | | |||||| || || || | Sbjct 41762 GGGCCTCGGGGATCTGCACCTCGCCTGAGAAGCGCTCAACGAGATTTTCGTTGACGATGC 41821 Query 33985 CATCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTT- 34043 ||||| ||| ||||| || || | | || || || || | |||||| |||| Sbjct 41822 CATCAGAGGCAGCAAAGAAGGCAAGAATGTGGGAGATGAAGTACTGCTCGTCT-TTGTTC 41880 Query 34044 ---AGTTTATTCCAATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAAT 34100 | || ||||| || | || ||| ||||| | ||| | || || | ||||| || Sbjct 41881 AGACGGTTGTTCCAGTCGTGGAGATCCTTAGACAGATCAATCTCCTCAGCAGTCCAGAAG 41940 Query 34101 GATGCCTCTGCCTTTTTATACATATTCCAGAT 34132 || ||||| ||||| || ||||| | |||||| Sbjct 41941 GAGGCCTCGGCCTTCTTGTACATCTGCCAGAT 41972 >seq598 Length=260485 Score = 149 bits (164), Expect = 8e-31 Identities = 508/778 (65%), Gaps = 23/778 (3%) Strand=Plus/Minus Query 63349 TAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTC 63408 |||| ||||||||| | | | ||||| |||||| || || | || ||||| | ||| Sbjct 22943 TAAG-TCGAGGAACTCGAAGACATCAGCATGCCATGGCTCGAGATAAATGGCAAAGGCTC 22885 Query 63409 CAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACA 63468 |||| || |||||||| ||||| || | || | |||||||| || |||| | | || Sbjct 22884 CAGGTCGCTTGTTTCCACCCTGGTCAACATAACGGGCGGTGTTGTTGAAAACACGTAGCA 22825 Query 63469 TTGGAATAATACCGTTTGATATACCATTGGTACCGGAGATATAGCCTCCACTGGCACGAA 63528 | |||| || ||||| || |||| || || || | || || ||| ||||||||| Sbjct 22824 TGGGAACGATGCCGTTCGAAGTACCGTTAGTGCCAGCAATGTAAGAGCCAGTGGCACGAA 22765 Query 63529 TA--TTACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTT 63586 || | |||| ||||| || || || ||||| || || || | || || || Sbjct 22764 TACGGTGAACATTG--AGACCGATACCACCAGCCATCTTGGAAATCATGGCACAAGTCTT 22707 Query 63587 TAACGTGTCATAGATGCCTTCTATGCTATCATCGATCATGTTAAGTAGAAAACAGCTAGA 63646 | || || || ||||| || ||||| ||||| |||||| | ||| ||||| ||| Sbjct 22706 GAGGGTATCGTAAATGCCCTCGATGCTGTCATCCTTCATGTCGACTAGGAAACATGAAGA 22647 Query 63647 CATTTGGTGACGAGTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTT 63706 || || | | ||| || |||||||| | ||||| || ||||| || || | || Sbjct 22646 CAACTGAGCCTGGGGAGTACCGGCATTAAAGAGCGTAGGTGATGCGTGAGTGAAGAACTT 22587 Query 63707 TTCAGAAAGTAGATTGTACGTCTCAA-TAGCTGA--GTCTAT---ATCCCATTGATGAAT 63760 ||| | || ||||| || |||| | || | || | | |||| ||| Sbjct 22586 GCTAGACATAAGGTTGTAGGTTTCAAGCACACGATCGACTTTGTCACCCCA------AAT 22533 Query 63761 TCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACAATTTTGTTGTTTATTTT 63820 || || || |||||||||| ||||||||| || | |||||||| || | | ||| Sbjct 22532 ACCCACAGCAACACGCATTATCATGTGCTGGGGACGCTCAACAATCTTACCATCAAGTTT 22473 Query 63821 CAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTC 63880 | | ||| || || | || ||||| ||||| || | ||| ||||| || || Sbjct 22472 GAGTAGGTACGAACGCTCGAGCGTCTTAAAGCCAAAGTACTGGTAGTTGAAGTCACGGTC 22413 Query 63881 GTAAATAATAACCGAATTGAGCTTATCCTTATATTTGTTAACTATATCCAT-GGTAATAC 63939 ||| | ||| | || | |||| |||||| | ||| | | ||| || Sbjct 22412 GTACACAATGGCAGAGTCCAGCTCATCCTTGTGACGCATAA-TGCACTCATATGTCTCTT 22354 Query 63940 TTGAAATAATCGGAGAATGTTTCCCATTTTTAGGATTAACATAGTTGAATAAATCCTCCA 63999 | || || || || || ||| | || || |||||||||| | | | || || Sbjct 22353 TGGAGATCATAGGGGAGGCTTTACGGTTCGCGGGGTTAACATAGTGGTAAAGGTCAGACA 22294 Query 64000 TCACTTCACTA-AATAGtttttttGTTTCCTTGTGTAGATTTGATATGGCTATTCTGGCG 64058 ||| || | || | || || |||| |||||| ||||| || | || || | |||| Sbjct 22293 CCAC-CGACGACCATTGCTTCTTGGTTTGCTTGTGAAGATTAGAGACAGCAATACGGGCG 22235 Query 64059 GCTAGAATGGCATAATCCGGATGTTGTGTAGTACAAGT-GGCTGCTATTTCGGCTGCC 64115 || || ||||||||||| ||||| |||| | || || ||| || ||||||| ||| Sbjct 22234 GCCAGGATGGCATAATCGGGATG-TGTGACGGTCATGTAGGCGGCAGTTTCGGCGGCC 22178 Score = 84.2 bits (92), Expect = 3e-11 Identities = 301/470 (64%), Gaps = 3/470 (1%) Strand=Plus/Minus Query 62034 TCCTTGTCCAATGTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATT 62093 |||| ||| | |||||||| || || || | || | | |||||| | |||||||| Sbjct 24268 TCCTGGTCTACAGTGAATTGGATAGGTGCAGCAGCAGCCTGCGTACGCAAGTAGTACATG 24209 Query 62094 CCCGTTTTTAGACCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTC 62153 ||||| || ||||| || |||| || ||| ||||| || || | ||| | Sbjct 24208 CCCGTCTTGAGACCTAGTTTCCAGCCAGCAAAGTGCATGCTGGTGATCTTGCCCATGGTG 24149 Query 62154 GGATCTGCTATATGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCA 62213 |||||| || || || || | ||| || ||| || ||||| || || | || ||| Sbjct 24148 GGATCTTTCATGTGAATGTTTAGAGACTGCGATTGGTCAATGAAAGCACCACGATCAGCA 24089 Query 62214 GCCATTTTTATGATCGTCTTTTGTGCAATTTCCCAAATAGTTTTATAAACTCGCTTAATA 62273 ||||||| | | || || | ||| ||||||| || || || | |||||| Sbjct 24088 GCCATTTGCACAACTGTACGCTGGGAAATCTCCCAAACGGTCTTGTACAGAGCTTTAATA 24029 Query 62274 TCTTCTGGAAGGTTTG---TATTCTGAATGGATCCACCATCTACCATAATCCTATTCTTG 62330 || | |||| | | | | ||||||||||| ||| || | ||||| | |||||| Sbjct 24028 TCAGCAGGAATGCTAGAGATGTTCTGAATGGAGCCATTGTCCGCAATAATGCGATTCTTC 23969 Query 62331 ATCTCATCATTCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGGTTAACTACT 62390 || | ||| |||||| ||| || | | ||||| ||||| || || Sbjct 23968 ATATTGTCAGACCATAAACCAAGATCGACTAGGTCACGTAGGAGCCAGGGGTTGACGACC 23909 Query 62391 TGGAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACCGAC 62450 ||||| || |||| | || | || |||||| || || || ||||| | || Sbjct 23908 TGGAACTCGCCAGCAAGAACGCGGCGCTGGTAAATGTTGGATGTGTAGGGTTCGAAGCAC 23849 Query 62451 TCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCAC 62500 ||||| || |||| ||| || | || || || ||||| ||||| || Sbjct 23848 TCATTGTTGCCCAGAATCTGCGACGTGCTGGCTGTAGGCATGGGTGCAAC 23799 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629810050061520