Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceratocystis_20eucalypticola_20[genbank_20GCA_5F001513815.1_202016- 01-13] 959 sequences; 30,717,923 total letters Query= NC_003663.2 Length=224499 Score E Sequences producing significant alignments: (Bits) Value seq598 178 2e-39 seq209 134 2e-26 >seq598 Length=260485 Score = 178 bits (196), Expect = 2e-39 Identities = 1325/2111 (63%), Gaps = 49/2111 (2%) Strand=Plus/Minus Query 78706 TCCTTGTCCAATGTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATT 78765 |||| ||| | |||||||| || || || | || | | |||||| | |||||||| Sbjct 24268 TCCTGGTCTACAGTGAATTGGATAGGTGCAGCAGCAGCCTGCGTACGCAAGTAGTACATG 24209 Query 78766 CCCGTTTTTAGACCGAGACTCCATCCGTAGAAATGCATACTCGTTAGTTTGGAATAACTC 78825 ||||| || ||||| || |||| || || ||||| || || | ||| | Sbjct 24208 CCCGTCTTGAGACCTAGTTTCCAGCCAGCAAAGTGCATGCTGGTGATCTTGCCCATGGTG 24149 Query 78826 GGATCTGCTATATGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCA 78885 |||||| || || || || | ||| || ||| || ||||| || || | || ||| Sbjct 24148 GGATCTTTCATGTGAATGTTTAGAGACTGCGATTGGTCAATGAAAGCACCACGATCAGCA 24089 Query 78886 GCCATTTTTATGATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAATA 78945 ||||||| | | || || | ||| ||||||| || || || | |||||| Sbjct 24088 GCCATTTGCACAACTGTACGCTGGGAAATCTCCCAAACGGTCTTGTACAGAGCTTTAATA 24029 Query 78946 TCTTCTGGAAGGTTTG---TATTCTGAATGGATCCACCATCTGCCATAATCCTATTCTTG 79002 || | |||| | | | | ||||||||||| ||| || || ||||| | |||||| Sbjct 24028 TCAGCAGGAATGCTAGAGATGTTCTGAATGGAGCCATTGTCCGCAATAATGCGATTCTTC 23969 Query 79003 ATCTCTTCATTCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGATTAACTACT 79062 || | ||| |||||| ||| || | | ||||| || || || || Sbjct 23968 ATATTGTCAGACCATAAACCAAGATCGACTAGGTCACGTAGGAGCCAGGGGTTGACGACC 23909 Query 79063 TGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATATGGTTCCACCGAT 79122 || || || |||| | || | || |||||| || || || ||||| | | Sbjct 23908 TGGAACTCGCCAGCAAGAACGCGGCGCTGGTAAATGTTGGATGTGTAGGGTTCGAAGCAC 23849 Query 79123 TCATTATTTCCCAAAATTTGAGCAGTTGATGCCGTTGGCATAGGTGCCACCAATAAACTA 79182 ||||| || |||| ||| || | || || || ||||| ||||| || | | | | Sbjct 23848 TCATTGTTGCCCAGAATCTGCGACGTGCTGGCTGTAGGCATGGGTGCAACTAGAAGAGAA 23789 Query 79183 TTTCTAAGACCGTA-TGATCTGATTTTATCTTTTAGAGATTCCCAATCCCAAAGATCAGA 79241 || | | ||| | || | | || || || |||||||| ||| ||||| || ||| Sbjct 23788 TTGCGTACACCATGCTGCT-TAATCTTCTCCTTTAGAGAAGTCCAGTCCCACAGGTCACT 23730 Query 79242 CGGGACAACATTCCAAAGATCATATTGTAGAATACCGTTACTAG-CGTATGATCCTGTGT 79300 || |||| ||| | |||| | || | || || || || | || || | Sbjct 23729 AGGAGTCACATCCCACATATCAAACTGCAAGATGCC-TTGGGAGACAGGAGAACCCTCAT 23671 Query 79301 ATGTTTCATAAGGTCCTTCCTTTTCGGCTAATTCACAACTCGCCTCTAATGCTCCGTAAT 79360 | ||| |||| || ||| | | ||| | ||| || || ||| ||| | Sbjct 23670 AAGTTGAGTAAGTACCCTCCGTCTGGGCGATTTCCATTGAAGCAGTTAGTGCGGCGTGGT 23611 Query 79361 AAATGGTTTCGAAAATCTTCTTATTGAGATCTTGTGCTTCTAGGCTATCAAATGGATAAT 79420 | |||||||| ||||||| ||| ||||| | ||||||| || ||||| || | Sbjct 23610 AGATGGTTTCAAAAATCTGCTTGTTGAGCTGGCGTGCTTCAGGGGATTCAAAAGGC-ATG 23552 Query 79421 TTAAGAG-AATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCTC 79479 |||| || || ||||| || | || || ||||| | ||| || || | || | | Sbjct 23551 CGGAGAGCAAGGAAAGCGTCAGCCAGGCCCTGTACACCGACACCAATGGGACGGTGGCGC 23492 Query 79480 TTATTAGAAATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTGAGA 79539 | || | | |||||| | | ||| || | ||| | ||| || || || || Sbjct 23491 ATGTTGCTGTTGTGAGCTTCCTGGACAGGGTAGTGATTCACATCGATGATGCGGTTTAGG 23432 Query 79540 TTCCTGACTATTACTTTGACCACATCCTTTAGTTTGAGAAAATCAAA-TCGTCCATCTAT 79598 || | || | |||| | || || | ||| || ||| ||| | || || | | Sbjct 23431 TTGCGAACAACAACTTGGGTGACTTCGTGTAGCTTTTTAAAGTCATACTCACCCTTGTTG 23372 Query 79599 TA-----CAAACATGTTCAACGCGACAGATGCCAGATTACAAACGGCTACCTCATTAGCA 79653 || | || | || | |||||| || || || || || ||||||| || Sbjct 23371 TAGTCCACGAAGGAAGGAAGGGCTAGAGATGCTAGGTTGCACACAGCGACCTCATCAGGG 23312 Query 79654 TCCGCATATTGTATTATTTCAGTGCAGAGGTTACTACACTTAATGGTTCCTAAATTTTGT 79713 | || | || || |||||||| ||||| || |||||| |||| ||||| Sbjct 23311 GCACAGTACTCGATAATCTCAGTGCACAGGTTCGAACTGCGAATGGTACCTAGATTTTTC 23252 Query 79714 TGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAACGGAGTACCAGTTTCAATC 79773 ||||| ||||| ||| || || || || || || || || | ||||| ||| || Sbjct 23251 TGATTGCTCTTGCGGTTGCAGTGGTCTTTGTAGAGCATAAAAGGGTTGCCAGTCTCAGTC 23192 Query 79774 TGAGATTCTATAATCGCTTTCCAGACGACTC-GAGCCTTTATTATAGACTTGT-ATCTCT 79831 |||| || | ||| || | ||| | | || | ||||| | | | || | | | Sbjct 23191 TGAGCCTCCAGAATGGCATACCACA-GTTTCTGGGCCTTGACAAC---CATGCGACCGCG 23136 Query 79832 TTTCTCTTTC--GTATTGTGTATATAATCGTTCGAACTCGTCTCCCCAAACATCGTCTAA 79889 ||| ||| ||| | | ||| | || ||||| || || | ||| | || Sbjct 23135 ACCCTCCTTCTCGTACTTTTCATACAGAGCCTCAAACTCTTCGCCATAGCAATCCGCCAA 23076 Query 79890 TCCAGGACATTCGTCAGGACACATCAACGACCACTCTCCATCATCCTTTACTCGTTTCAT 79949 || || ||||| | || ||||| | | ||| || ||| | || || || ||||| Sbjct 23075 GCCGGGGCATTCATTGGGGCACATGAGAGTCCAGTCCTCATTCTTCTCAACACGCTTCAT 23016 Query 79950 AAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGCTCCTCGTTTCC 80009 || | || ||||| || || | ||||| || | | | || || ||||| Sbjct 23015 GAACAAGTCGCAGATCCACAGGGCCAAGAATAGGTCACGAGCACGGACTTCTTCCTTTCC 22956 Query 80010 TGTATTCTTTT-TAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATA 80068 ||||| |||| ||||||||| | | | ||||| |||||| || || | || | Sbjct 22955 GTGGTTCTTGCGTAAG-TCGAGGAACTCGAAGACATCAGCATGCCATGGCTCGAGATAAA 22897 Query 80069 TGGCCATAACTCCCGGTCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTAT 80128 |||| | |||| ||||| |||||||| ||||| || | || | |||||||| || Sbjct 22896 TGGCAAAGGCTCCAGGTCGCTTGTTTCCACCCTGGTCAACATAACGGGCGGTGTTGTTGA 22837 Query 80129 AAACTCTCAACATTGGAATAATACCATTGGATGTACCATTGGTCCCGGAGATATAGCTTC 80188 |||| | | ||| |||| || || || || ||||| || || || | || || | Sbjct 22836 AAACACGTAGCATGGGAACGATGCCGTTCGAAGTACCGTTAGTGCCAGCAATGTAAGAGC 22777 Query 80189 CACTGGCACGAATA--TTACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAA 80246 || ||||||||||| | |||| ||||| || || || ||||| || || || | Sbjct 22776 CAGTGGCACGAATACGGTGAACATTG--AGACCGATACCACCAGCCATCTTGGAAATCAT 22719 Query 80247 TGCGCATCGTTTTAACGTATCATAGATGCCCTCTATGCTATCATCAATCATGTTAAGTAG 80306 || || || | ||||| || |||||||| ||||| ||||| |||||| | ||| Sbjct 22718 GGCACAAGTCTTGAGGGTATCGTAAATGCCCTCGATGCTGTCATCCTTCATGTCGACTAG 22659 Query 80307 AAAACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTG 80366 ||||| ||||| || | ||| || |||||||| | ||||| || ||||| Sbjct 22658 GAAACATGAAGACAACTGAGCCTGGGGAGTACCGGCATTAAAGAGCGTAGGTGATGCGTG 22599 Query 80367 CGTAAACCATTTTTCAGACAGTAGATTGTACGTCTCAA-TAGCTGAT--TCTAT---ATC 80420 || || | || ||||| || ||||| || |||| | ||| || | | | Sbjct 22598 AGTGAAGAACTTGCTAGACATAAGGTTGTAGGTTTCAAGCACACGATCGACTTTGTCACC 22539 Query 80421 CCATTGATGAATTCCTACCGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTT 80480 ||| ||| || || || |||||||||| ||||||||| || | ||||| ||||| Sbjct 22538 CCA------AATACCCACAGCAACACGCATTATCATGTGCTGGGGACGCTCAACAATCTT 22485 Query 80481 GTTATTTATTTTCAACAAGTAAGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGA 80540 || | ||| | | ||| || || | || ||||| ||||| || | ||| Sbjct 22484 ACCATCAAGTTTGAGTAGGTACGAACGCTCGAGCGTCTTAAAGCCAAAGTACTGGTAGTT 22425 Query 80541 AAAGTCTCGTTCGTAAATAATAACCGAGTTGAGTTTATCCTTATATTTGTTAACTACATC 80600 ||||| || ||||| | ||| | |||| || | |||||| | ||| | || Sbjct 22424 GAAGTCACGGTCGTACACAATGGCAGAGTCCAGCTCATCCTTGTGACGCATAA-TGCACT 22366 Query 80601 CATGGTGATACTT--GAAATAATCGGAGAATGTTTCCCATTTTTAGGATTAACATAGTTG 80658 ||| || ||| || || || || || ||| | || || |||||||||| | Sbjct 22365 CAT-ATGTCTCTTTGGAGATCATAGGGGAGGCTTTACGGTTCGCGGGGTTAACATAGTGG 22307 Query 80659 AATAAATCCTCCATCACTTCACTA-AATAGtttttttGTTTCCTTGTGTAGATTTGATAC 80717 | | || || ||| || | || | || || |||| |||||| ||||| || || Sbjct 22306 TAAAGGTCAGACACCAC-CGACGACCATTGCTTCTTGGTTTGCTTGTGAAGATTAGAGAC 22248 Query 80718 GGCTATTCTGGCGGCTAAAATGGCATAATCTGGATGTTGTGTAGTACAAGT-GGCTGCTA 80776 || || | |||||| | ||||||||||| ||||| |||| | || || ||| || Sbjct 22247 AGCAATACGGGCGGCCAGGATGGCATAATCGGGATG-TGTGACGGTCATGTAGGCGGCAG 22189 Query 80777 TTTCGGCTGCC 80787 ||||||| ||| Sbjct 22188 TTTCGGCGGCC 22178 >seq209 Length=70751 Score = 134 bits (148), Expect = 2e-26 Identities = 374/570 (66%), Gaps = 14/570 (2%) Strand=Plus/Plus Query 49951 AACATCAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAA 50010 |||| || || || || ||| |||||| ||||| || | | ||| || ||||| || Sbjct 41407 AACAGCAGGCAAGCAAAGTCGGTGTGCAGGCCCTCATCACGAGAAATAAGCTCGTTTGAG 41466 Query 50011 AACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGACCCA 50070 || || || || ||||| || |||||||| ||||| || ||||| || || | || Sbjct 41467 AAGGTCAGACCAGGCATGAGACCACGCTTGCGCAGCCAGAAGATGGAGGCGAAGGCGCCT 41526 Query 50071 GAAAAGAAGATTCCTTCTACTGCGGCAAAGGCAACAAGTCTCTCTCCATAACTGG---CG 50127 || || ||||| || || || || ||||||||||| || | || || | | | | Sbjct 41527 GAGAAAAAGATGCCCTCGACAGCAGCAAAGGCAACTAGGCGCTGGGCAAACGTCGACTCC 41586 Query 50128 CTGTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCT 50187 |||| |||||||| ||||||| |||||||| | || || || || || Sbjct 41587 TTGTCGGTGATCCACTTCAGAGCCCAGTCGGCCTTGCGGCGGATGCAGGGAATAGTGTCA 41646 Query 50188 ATGGCATTAAAGAGATAGtttttttCATTACTA----TCTTTAACATAAGTATCGATCAA 50243 |||||||| || || || | | | || | | || || | || || || |||| Sbjct 41647 ATGGCATTGAACAGGTA----TGTGCGTTGCGAGGGCTCCTTGATGTAGGTGTCAATCAG 41702 Query 50244 AAGACTATACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCT 50303 || || |||| || || |||||||| || ||||| || || ||||| || | Sbjct 41703 CAGCGAGTAGGTTTCAGAGTGGATGTTTTCCATCATGATCTGGAAACCATAGAAGCAGCG 41762 Query 50304 AGCCTCGGTAATCTGCACTTCTGTACAAAATCGTTCAGCTAAATTTTCATTCACTATTCC 50363 ||||||| |||||||| || | || || ||| | | |||||| || || || || Sbjct 41763 GGCCTCGGGGATCTGCACCTCGCCTGAGAAGCGCTCAACGAGATTTTCGTTGACGATGCC 41822 Query 50364 GTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATGTTTTTCG--TTGGGTGTT 50421 ||| ||| ||||| || || | | || || || | | ||| || | | Sbjct 41823 ATCAGAGGCAGCAAAGAAGGCAAGAATGTGGGAGATGAAGTACTGCTCGTCTTTGTTCAG 41882 Query 50422 A-GTTTATTCCAATCATTGATATCTTTAGATATATCTACTTCTTCCACTGTCCAAAATGA 50480 | | || ||||| || | || ||| ||||| | ||| | || || | ||||| || || Sbjct 41883 ACGGTTGTTCCAGTCGTGGAGATCCTTAGACAGATCAATCTCCTCAGCAGTCCAGAAGGA 41942 Query 50481 TGCCTCTGCCTTTTTATACATATTCCAGAT 50510 ||||| ||||| || ||||| | |||||| Sbjct 41943 GGCCTCGGCCTTCTTGTACATCTGCCAGAT 41972 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 718260189752760